Mutagenetix > Incidental Mutation

Incidental Mutation 'R0180:Ido1'

23820

Institutional Source

Beutler Lab

Gene Symbol

Ido1

Ensembl Gene

ENSMUSG00000031551

Gene Name

indoleamine 2,3-dioxygenase 1

Synonyms

Ido, Indo

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R0180 (G1)

Quality Score

225

Status

Validated (trace)

Chromosome

Chromosomal Location

25074148-25086987 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 25083156 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Isoleucine to Valine at position 90 (I90V)

Ref Sequence

ENSEMBL: ENSMUSP00000033956 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000033956] [ENSMUST00000110667]

AlphaFold

P28776

Predicted Effect

possibly damaging
Transcript: ENSMUST00000033956
AA Change: I90V

PolyPhen 2 Score 0.869 (Sensitivity: 0.83; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000033956
Gene: ENSMUSG00000031551
AA Change: I90V

Domain	Start	End	E-Value	Type
Pfam:IDO	15	402	4.7e-124	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000110667

SMART Domains

Protein: ENSMUSP00000106295
Gene: ENSMUSG00000031551

Domain	Start	End	E-Value	Type
Pfam:IDO	1	313	6e-111	PFAM

Meta Mutation Damage Score

0.2638

Coding Region Coverage

1x: 99.0%
3x: 98.1%
10x: 95.8%
20x: 89.5%

Validation Efficiency

77% (53/69)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes indoleamine 2,3-dioxygenase (IDO) - a heme enzyme that catalyzes the first and rate-limiting step in tryptophan catabolism to N-formyl-kynurenine. This enzyme acts on multiple tryptophan substrates including D-tryptophan, L-tryptophan, 5-hydroxy-tryptophan, tryptamine, and serotonin. This enzyme is thought to play a role in a variety of pathophysiological processes such as antimicrobial and antitumor defense, neuropathology, immunoregulation, and antioxidant activity. Through its expression in dendritic cells, monocytes, and macrophages this enzyme modulates T-cell behavior by its peri-cellular catabolization of the essential amino acid tryptophan.[provided by RefSeq, Feb 2011]
PHENOTYPE: Mice homozygous for a null allele fail to induce IFN-alpha production by dendritic cells after B7 ligation, and show epididymal inflammation, teratospermia, and elevated caudal epididymal sperm counts along with higher protein and cytokine levels and reduced leukocyte count and proteasome activity. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 74 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1110059E24Rik	T	A	19: 21,630,003 (GRCm39)	N24Y	probably damaging	Het
2810408A11Rik	A	T	11: 69,789,702 (GRCm39)	M311K	probably benign	Het
Ackr2	T	C	9: 121,737,982 (GRCm39)	I119T	probably benign	Het
Adamtsl3	A	G	7: 82,225,198 (GRCm39)	M336V	probably benign	Het
Adhfe1	T	A	1: 9,634,082 (GRCm39)	F374I	probably benign	Het
Apob	C	T	12: 8,058,285 (GRCm39)	Q2256*	probably null	Het
Arg1	T	C	10: 24,792,728 (GRCm39)	I169V	probably benign	Het
Atxn1	A	G	13: 45,711,024 (GRCm39)	V636A	probably damaging	Het
B3gnt5	T	A	16: 19,587,850 (GRCm39)	I23K	possibly damaging	Het
Catsperg1	A	T	7: 28,889,856 (GRCm39)		probably null	Het
Celf3	T	A	3: 94,392,647 (GRCm39)	F115L	probably damaging	Het
Cep192	T	A	18: 67,968,559 (GRCm39)	H984Q	probably damaging	Het
Col18a1	A	G	10: 76,932,351 (GRCm39)	V493A	probably benign	Het
Col5a2	C	T	1: 45,450,620 (GRCm39)	G376S	probably damaging	Het
Colec12	A	G	18: 9,848,890 (GRCm39)	H356R	probably damaging	Het
Colec12	C	T	18: 9,858,921 (GRCm39)	P568L	unknown	Het
Cracr2a	T	C	6: 127,581,037 (GRCm39)		probably null	Het
Ctsr	T	C	13: 61,310,559 (GRCm39)	H62R	probably damaging	Het
Cyp4f40	G	T	17: 32,878,641 (GRCm39)	W61L	probably benign	Het
Dnah9	T	G	11: 66,038,116 (GRCm39)	H140P	probably damaging	Het
Dnai7	A	G	6: 145,128,944 (GRCm39)		probably benign	Het
Dnm1	T	G	2: 32,218,005 (GRCm39)	I464L	probably damaging	Het
Dnmt1	G	A	9: 20,819,916 (GRCm39)	T1409I	probably damaging	Het
Dock1	G	A	7: 134,700,566 (GRCm39)	D1109N	probably damaging	Het
Efhc1	A	G	1: 21,037,713 (GRCm39)	M297V	probably benign	Het
Emcn	A	T	3: 137,124,755 (GRCm39)		probably null	Het
Ephb1	A	T	9: 101,804,703 (GRCm39)	M905K	probably damaging	Het
Fbxw10	A	G	11: 62,743,922 (GRCm39)	Y276C	probably benign	Het
Fermt3	C	A	19: 6,979,711 (GRCm39)	S474I	possibly damaging	Het
Frg1	T	A	8: 41,852,105 (GRCm39)		probably null	Het
Gbf1	T	C	19: 46,274,161 (GRCm39)	S1732P	probably benign	Het
Gbp8	A	C	5: 105,179,142 (GRCm39)	L119R	probably damaging	Het
Gldc	C	T	19: 30,078,217 (GRCm39)	A927T	possibly damaging	Het
Gm8836	T	A	6: 70,237,389 (GRCm39)		probably benign	Het
Grhl3	C	T	4: 135,281,841 (GRCm39)	V344I	probably benign	Het
Hhipl1	T	A	12: 108,294,329 (GRCm39)	L745H	probably damaging	Het
Itpr2	T	A	6: 146,403,407 (GRCm39)		probably benign	Het
Kif1b	T	G	4: 149,298,116 (GRCm39)	S1029R	probably damaging	Het
Kmt2a	G	A	9: 44,738,148 (GRCm39)		probably benign	Het
Limk1	T	C	5: 134,698,115 (GRCm39)	N215D	probably damaging	Het
Lims2	A	G	18: 32,089,368 (GRCm39)	K144E	probably benign	Het
Mfsd6l	A	T	11: 68,447,371 (GRCm39)	Q74L	possibly damaging	Het
Mroh1	T	A	15: 76,312,450 (GRCm39)	S546T	probably damaging	Het
Ncbp3	T	A	11: 72,955,804 (GRCm39)		probably null	Het
Nlrx1	G	A	9: 44,166,756 (GRCm39)	H776Y	possibly damaging	Het
Nptxr	T	C	15: 79,678,604 (GRCm39)	M228V	probably benign	Het
Nsf	T	A	11: 103,821,606 (GRCm39)	L13F	probably damaging	Het
Nyap1	T	C	5: 137,736,283 (GRCm39)	E68G	probably damaging	Het
Or10p22	A	T	10: 128,826,703 (GRCm39)	R307S	possibly damaging	Het
Or51r1	A	G	7: 102,228,239 (GRCm39)	Y179C	probably damaging	Het
Pcdhb9	A	G	18: 37,535,307 (GRCm39)	N434D	probably damaging	Het
Pgm5	T	C	19: 24,793,127 (GRCm39)	D313G	probably damaging	Het
Pkdcc	G	A	17: 83,529,299 (GRCm39)		probably null	Het
Pkp1	T	C	1: 135,814,538 (GRCm39)	K261R	probably benign	Het
Pnpla6	A	G	8: 3,574,250 (GRCm39)		probably null	Het
Polr3b	A	G	10: 84,458,379 (GRCm39)	T17A	probably benign	Het
Ppt2	A	T	17: 34,845,477 (GRCm39)	M98K	probably damaging	Het
Rasal3	T	C	17: 32,618,379 (GRCm39)	D142G	probably benign	Het
Rbm17	G	A	2: 11,592,590 (GRCm39)	S295L	probably benign	Het
Rhbdf1	A	T	11: 32,160,042 (GRCm39)	V153D	possibly damaging	Het
Slc6a3	C	T	13: 73,710,455 (GRCm39)	T355M	probably damaging	Het
Snrnp35	A	T	5: 124,628,883 (GRCm39)		probably benign	Het
Sorcs2	A	T	5: 36,311,189 (GRCm39)	I37N	probably damaging	Het
Tecta	G	T	9: 42,278,109 (GRCm39)	P1133Q	probably benign	Het
Tmem145	A	G	7: 25,014,124 (GRCm39)	I413V	probably benign	Het
Trappc11	G	T	8: 47,981,009 (GRCm39)	T144K	possibly damaging	Het
Triml2	A	T	8: 43,643,346 (GRCm39)	I223L	probably benign	Het
Ube2g2	T	A	10: 77,466,573 (GRCm39)	N19K	possibly damaging	Het
Ubqln3	A	G	7: 103,791,047 (GRCm39)	Y348H	probably damaging	Het
Wfs1	A	G	5: 37,124,372 (GRCm39)	F840L	probably damaging	Het
Zc3h11a	T	C	1: 133,549,349 (GRCm39)	I771V	probably benign	Het
Zdhhc23	G	A	16: 43,794,066 (GRCm39)	P203S	probably benign	Het
Zfp106	T	G	2: 120,364,356 (GRCm39)	T684P	probably damaging	Het
Zfp217	A	T	2: 169,962,057 (GRCm39)	L90Q	probably damaging	Het

Other mutations in Ido1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00832:Ido1	APN	8	25,074,575 (GRCm39)	missense	possibly damaging	0.93
IGL01987:Ido1	APN	8	25,083,159 (GRCm39)	missense	probably benign	0.02
IGL02960:Ido1	APN	8	25,083,345 (GRCm39)	splice site	probably benign
R0652:Ido1	UTSW	8	25,075,260 (GRCm39)	missense	probably damaging	1.00
R1102:Ido1	UTSW	8	25,083,156 (GRCm39)	missense	probably damaging	1.00
R1474:Ido1	UTSW	8	25,074,462 (GRCm39)	missense	probably damaging	0.97
R1925:Ido1	UTSW	8	25,075,306 (GRCm39)	missense	possibly damaging	0.82
R2509:Ido1	UTSW	8	25,074,501 (GRCm39)	nonsense	probably null
R4913:Ido1	UTSW	8	25,074,533 (GRCm39)	missense	probably benign
R4962:Ido1	UTSW	8	25,074,565 (GRCm39)	missense	probably benign	0.00
R5313:Ido1	UTSW	8	25,077,794 (GRCm39)	missense	probably damaging	1.00
R5654:Ido1	UTSW	8	25,077,819 (GRCm39)	missense	probably damaging	1.00
R5660:Ido1	UTSW	8	25,081,558 (GRCm39)	missense	probably damaging	1.00
R6144:Ido1	UTSW	8	25,075,306 (GRCm39)	missense	possibly damaging	0.82
R7436:Ido1	UTSW	8	25,076,932 (GRCm39)	missense	probably benign	0.00
R7615:Ido1	UTSW	8	25,083,204 (GRCm39)	missense	probably damaging	1.00
R7873:Ido1	UTSW	8	25,074,758 (GRCm39)	missense	probably damaging	0.98
R8490:Ido1	UTSW	8	25,086,954 (GRCm39)	start codon destroyed	probably null	1.00
R8896:Ido1	UTSW	8	25,077,880 (GRCm39)	missense	probably benign	0.00
R8917:Ido1	UTSW	8	25,081,523 (GRCm39)	missense	probably benign
R9361:Ido1	UTSW	8	25,079,601 (GRCm39)	missense	probably benign	0.01

Predicted Primers

PCR Primer
(F):5'- TCAAACCGTAGTGCCTCCTTCCAG -3'
(R):5'- TGATTGAGAACGGGCAGCTTCG -3'

Sequencing Primer
(F):5'- ACTTCTTATGGGTCTAGGGTTCAAAC -3'
(R):5'- GTTTGAAAACCTGTACAATCGCC -3'

Posted On

2013-04-16