Mutagenetix > Incidental Mutation

Incidental Mutation 'R2202:Ntn4'

238766

Institutional Source

Beutler Lab

Gene Symbol

Ntn4

Ensembl Gene

ENSMUSG00000020019

Gene Name

netrin 4

Synonyms

beta-netrin

MMRRC Submission

040204-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R2202 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

93640681-93747207 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

C to T at 93707353 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Arginine to Tryptophan at position 314 (R314W)

Ref Sequence

ENSEMBL: ENSMUSP00000020204 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000020204]

AlphaFold

Q9JI33

Predicted Effect

probably damaging
Transcript: ENSMUST00000020204
AA Change: R314W

PolyPhen 2 Score 0.988 (Sensitivity: 0.73; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000020204
Gene: ENSMUSG00000020019
AA Change: R314W

Domain	Start	End	E-Value	Type
signal peptide	1	19	N/A	INTRINSIC
LamNT	28	260	6.48e-55	SMART
EGF_Lam	262	329	5.83e-7	SMART
EGF_Lam	332	392	3.32e-11	SMART
EGF_Lam	395	446	3.73e-14	SMART
C345C	516	625	5.58e-25	SMART

Meta Mutation Damage Score

0.6651

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.5%
20x: 95.6%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the netrin family of proteins, which function in various biological processes including axon guidance, tumorogenesis, and angiogenesis. Netrins are laminin-related proteins that have an N-terminal laminin-type domain, epidermal growth factor-like repeat domain, and a positively charged heparin-binding domain at the C-terminus. The protein encoded by this gene is involved in processes including neurite growth and migration, angiogenesis and mural cell adhesion to endothelial cells. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jul 2016]
PHENOTYPE: Mice homozygous for a knock-out allele exhibit increased cell proliferation in the cornea without an increase in corneal thickness and increased microvessel branching in the middle levels of the retina. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 91 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
0610040J01Rik	T	C	5: 63,898,668 (GRCm38)	V249A	possibly damaging	Het
5330417C22Rik	C	T	3: 108,475,043 (GRCm38)	G270E	probably damaging	Het
9930111J21Rik2	C	G	11: 49,019,322 (GRCm38)	L761F	probably damaging	Het
Abca1	G	A	4: 53,090,291 (GRCm38)	T386I	probably damaging	Het
Abca14	T	C	7: 120,289,541 (GRCm38)	Y1237H	probably benign	Het
Abi3bp	T	G	16: 56,613,203 (GRCm38)	L550R	probably benign	Het
Abi3bp	C	T	16: 56,650,725 (GRCm38)	R578*	probably null	Het
Adamts7	A	T	9: 90,180,676 (GRCm38)	K394N	probably damaging	Het
Ahdc1	A	G	4: 133,065,909 (GRCm38)	E1487G	possibly damaging	Het
AI987944	T	C	7: 41,374,526 (GRCm38)	E343G	probably damaging	Het
Ankrd26	T	A	6: 118,523,882 (GRCm38)	H876L	possibly damaging	Het
Atg16l1	A	C	1: 87,767,015 (GRCm38)	Q138P	probably benign	Het
Atp1b1	G	T	1: 164,453,515 (GRCm38)	T11K	probably benign	Het
Calr3	A	G	8: 72,434,839 (GRCm38)	L40S	probably damaging	Het
Ccar1	A	C	10: 62,745,287 (GRCm38)	D1119E	unknown	Het
Cdan1	C	A	2: 120,720,760 (GRCm38)	C1093F	probably damaging	Het
Cdk12	T	G	11: 98,210,638 (GRCm38)	S441A	unknown	Het
Ces4a	T	A	8: 105,146,114 (GRCm38)	V333E	probably damaging	Het
Cfap61	T	C	2: 146,214,680 (GRCm38)	L1193P	probably damaging	Het
Chd2	A	T	7: 73,478,668 (GRCm38)	D856E	probably benign	Het
Chil3	T	C	3: 106,164,246 (GRCm38)	D34G	probably benign	Het
Cln3	T	A	7: 126,579,218 (GRCm38)	H211L	probably benign	Het
Cpa1	A	G	6: 30,641,819 (GRCm38)	D214G	probably damaging	Het
Cttnbp2	T	G	6: 18,408,694 (GRCm38)	D976A	probably benign	Het
Dcstamp	T	A	15: 39,754,312 (GRCm38)	V39E	probably damaging	Het
Dicer1	C	T	12: 104,731,038 (GRCm38)	V87M	possibly damaging	Het
Duox1	A	G	2: 122,344,713 (GRCm38)	T1331A	probably benign	Het
Fam184a	T	A	10: 53,652,434 (GRCm38)	Q29L	probably damaging	Het
Fcer2a	T	C	8: 3,688,557 (GRCm38)	E60G	possibly damaging	Het
Flnc	C	T	6: 29,459,508 (GRCm38)	P2536S	probably damaging	Het
Fnbp1l	A	T	3: 122,546,962 (GRCm38)	M463K	probably benign	Het
Garem2	A	G	5: 30,114,764 (GRCm38)	D408G	probably benign	Het
Gm12169	A	G	11: 46,528,567 (GRCm38)	N70S	probably benign	Het
Gm6370	T	A	5: 146,493,729 (GRCm38)	D241E	probably benign	Het
Gpc3	T	A	X: 52,397,206 (GRCm38)	I344F	probably damaging	Het
Gtf2e1	T	A	16: 37,511,542 (GRCm38)	E390D	possibly damaging	Het
Hmgcs2	T	A	3: 98,291,183 (GRCm38)	I134N	probably damaging	Het
Il15ra	T	A	2: 11,718,344 (GRCm38)		probably null	Het
Ints8	A	T	4: 11,225,712 (GRCm38)	M615K	possibly damaging	Het
Irak1	G	A	X: 74,017,138 (GRCm38)	T193I	probably damaging	Het
Jmjd1c	A	G	10: 67,239,463 (GRCm38)		probably null	Het
Knstrn	T	A	2: 118,830,975 (GRCm38)		probably null	Het
Letm1	C	A	5: 33,769,486 (GRCm38)	V156L	possibly damaging	Het
Lrrc24	G	A	15: 76,722,911 (GRCm38)	P95L	probably damaging	Het
Map2k2	T	C	10: 81,119,379 (GRCm38)	S14P	probably damaging	Het
Me3	T	C	7: 89,850,381 (GRCm38)	Y535H	probably damaging	Het
Nfatc2ip	T	C	7: 126,391,295 (GRCm38)	E178G	probably benign	Het
Nop56	T	A	2: 130,277,568 (GRCm38)	I51N	probably damaging	Het
Nudt5	A	T	2: 5,855,983 (GRCm38)	I22F	possibly damaging	Het
Olfr1198	C	G	2: 88,746,609 (GRCm38)	G93A	probably benign	Het
Olfr164	C	T	16: 19,286,297 (GRCm38)	A149T	probably benign	Het
Olfr714	T	A	7: 107,074,316 (GRCm38)	W163R	probably damaging	Het
Pbrm1	A	G	14: 31,032,449 (GRCm38)	D142G	possibly damaging	Het
Pdcl	A	T	2: 37,352,044 (GRCm38)	N231K	probably benign	Het
Pdlim2	C	T	14: 70,164,779 (GRCm38)	R296H	probably damaging	Het
Pid1	T	A	1: 84,038,438 (GRCm38)	I69F	probably damaging	Het
Pkhd1	A	G	1: 20,537,360 (GRCm38)	S1091P	probably benign	Het
Plcb4	T	C	2: 136,002,594 (GRCm38)	I144T	probably benign	Het
Plxnd1	T	C	6: 115,962,764 (GRCm38)	N1418S	probably benign	Het
Pmm1	T	C	15: 81,956,400 (GRCm38)	T82A	probably benign	Het
Prrc2b	C	A	2: 32,223,464 (GRCm38)	Q1970K	probably damaging	Het
Ptprz1	C	T	6: 23,000,650 (GRCm38)	T913M	possibly damaging	Het
Ralgapa1	T	C	12: 55,612,800 (GRCm38)		probably null	Het
Rbm8a2	T	C	1: 175,978,854 (GRCm38)	E19G	possibly damaging	Het
Rgs3	T	C	4: 62,690,504 (GRCm38)	S336P	probably damaging	Het
Serpina11	G	T	12: 103,985,974 (GRCm38)	T179K	probably damaging	Het
Serpina1f	T	C	12: 103,693,396 (GRCm38)	N209S	possibly damaging	Het
Serpinf2	G	A	11: 75,436,762 (GRCm38)	T159I	probably benign	Het
Slc19a1	T	C	10: 77,041,924 (GRCm38)	C98R	possibly damaging	Het
Slc22a20	A	T	19: 5,971,525 (GRCm38)	I483N	possibly damaging	Het
Spata31d1d	A	G	13: 59,731,621 (GRCm38)	C34R	possibly damaging	Het
Stoml2	G	T	4: 43,030,243 (GRCm38)	Y119*	probably null	Het
Susd1	A	G	4: 59,349,843 (GRCm38)	L531P	possibly damaging	Het
Tex45	A	T	8: 3,479,028 (GRCm38)	D201V	probably benign	Het
Tln1	C	T	4: 43,553,083 (GRCm38)		probably null	Het
Tmem39b	A	C	4: 129,693,923 (GRCm38)	S32A	probably benign	Het
Tmx3	T	C	18: 90,527,913 (GRCm38)	F206S	probably damaging	Het
Tnfsf14	T	C	17: 57,190,638 (GRCm38)	D198G	possibly damaging	Het
Trappc10	A	G	10: 78,199,042 (GRCm38)		probably null	Het
Tssk2	A	G	16: 17,898,739 (GRCm38)	D2G	possibly damaging	Het
Ttn	T	C	2: 76,771,641 (GRCm38)	N18559S	possibly damaging	Het
Ube3b	G	A	5: 114,389,074 (GRCm38)	V118M	probably damaging	Het
Vmn1r23	T	C	6: 57,926,619 (GRCm38)	D58G	probably benign	Het
Vmn2r53	T	A	7: 12,601,439 (GRCm38)	Y98F	probably damaging	Het
Vmn2r58	T	A	7: 41,864,170 (GRCm38)	N350Y	probably benign	Het
Vmn2r82	A	T	10: 79,356,685 (GRCm38)	H32L	probably benign	Het
Wsb1	T	C	11: 79,240,386 (GRCm38)	I395V	probably benign	Het
Zfat	T	C	15: 68,179,860 (GRCm38)	D695G	probably benign	Het
Zfp358	G	T	8: 3,496,995 (GRCm38)	V526F	possibly damaging	Het
Zfp651	A	G	9: 121,762,637 (GRCm38)	T8A	possibly damaging	Het
Zmat1	A	G	X: 134,973,112 (GRCm38)	L476P	possibly damaging	Het

Other mutations in Ntn4

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02052:Ntn4	APN	10	93,707,349 (GRCm38)	missense	probably damaging	1.00
IGL02212:Ntn4	APN	10	93,644,849 (GRCm38)	missense	possibly damaging	0.50
IGL02698:Ntn4	APN	10	93,644,659 (GRCm38)	missense	probably benign	0.19
IGL02752:Ntn4	APN	10	93,710,559 (GRCm38)	missense	possibly damaging	0.84
PIT4468001:Ntn4	UTSW	10	93,644,725 (GRCm38)	missense	probably damaging	0.99
R0131:Ntn4	UTSW	10	93,644,707 (GRCm38)	missense	possibly damaging	0.89
R0131:Ntn4	UTSW	10	93,644,707 (GRCm38)	missense	possibly damaging	0.89
R0132:Ntn4	UTSW	10	93,644,707 (GRCm38)	missense	possibly damaging	0.89
R0419:Ntn4	UTSW	10	93,682,429 (GRCm38)	missense	probably benign	0.04
R1304:Ntn4	UTSW	10	93,707,353 (GRCm38)	missense	probably damaging	0.99
R1306:Ntn4	UTSW	10	93,707,353 (GRCm38)	missense	probably damaging	0.99
R1307:Ntn4	UTSW	10	93,707,353 (GRCm38)	missense	probably damaging	0.99
R1308:Ntn4	UTSW	10	93,707,353 (GRCm38)	missense	probably damaging	0.99
R1619:Ntn4	UTSW	10	93,644,734 (GRCm38)	missense	probably damaging	1.00
R1645:Ntn4	UTSW	10	93,707,353 (GRCm38)	missense	probably damaging	0.99
R1664:Ntn4	UTSW	10	93,707,353 (GRCm38)	missense	probably damaging	0.99
R1695:Ntn4	UTSW	10	93,733,602 (GRCm38)	splice site	probably null
R1796:Ntn4	UTSW	10	93,745,771 (GRCm38)	missense	probably damaging	1.00
R1806:Ntn4	UTSW	10	93,707,353 (GRCm38)	missense	probably damaging	0.99
R1845:Ntn4	UTSW	10	93,707,353 (GRCm38)	missense	probably damaging	0.99
R1856:Ntn4	UTSW	10	93,707,353 (GRCm38)	missense	probably damaging	0.99
R1872:Ntn4	UTSW	10	93,707,353 (GRCm38)	missense	probably damaging	0.99
R1879:Ntn4	UTSW	10	93,707,353 (GRCm38)	missense	probably damaging	0.99
R1901:Ntn4	UTSW	10	93,707,372 (GRCm38)	missense	possibly damaging	0.93
R1902:Ntn4	UTSW	10	93,707,372 (GRCm38)	missense	possibly damaging	0.93
R1925:Ntn4	UTSW	10	93,707,353 (GRCm38)	missense	probably damaging	0.99
R1926:Ntn4	UTSW	10	93,707,353 (GRCm38)	missense	probably damaging	0.99
R1927:Ntn4	UTSW	10	93,707,353 (GRCm38)	missense	probably damaging	0.99
R2060:Ntn4	UTSW	10	93,707,353 (GRCm38)	missense	probably damaging	0.99
R2113:Ntn4	UTSW	10	93,644,839 (GRCm38)	missense	probably damaging	1.00
R2203:Ntn4	UTSW	10	93,707,353 (GRCm38)	missense	probably damaging	0.99
R2975:Ntn4	UTSW	10	93,644,891 (GRCm38)	missense	probably damaging	1.00
R4277:Ntn4	UTSW	10	93,741,210 (GRCm38)	missense	possibly damaging	0.95
R4805:Ntn4	UTSW	10	93,644,500 (GRCm38)	missense	probably damaging	0.99
R4806:Ntn4	UTSW	10	93,644,500 (GRCm38)	missense	probably damaging	0.99
R4807:Ntn4	UTSW	10	93,644,500 (GRCm38)	missense	probably damaging	0.99
R5818:Ntn4	UTSW	10	93,644,764 (GRCm38)	missense	probably benign	0.40
R6048:Ntn4	UTSW	10	93,707,266 (GRCm38)	splice site	probably null
R6051:Ntn4	UTSW	10	93,745,795 (GRCm38)	missense	probably benign
R6346:Ntn4	UTSW	10	93,644,861 (GRCm38)	missense	probably damaging	1.00
R6752:Ntn4	UTSW	10	93,734,175 (GRCm38)	missense	probably benign
R7196:Ntn4	UTSW	10	93,733,714 (GRCm38)	missense	probably benign	0.01
R7240:Ntn4	UTSW	10	93,745,741 (GRCm38)	missense	probably damaging	0.99
R7365:Ntn4	UTSW	10	93,644,804 (GRCm38)	missense	probably damaging	1.00
R7374:Ntn4	UTSW	10	93,682,572 (GRCm38)	missense	probably benign
R7505:Ntn4	UTSW	10	93,707,284 (GRCm38)	missense	probably damaging	1.00
R7509:Ntn4	UTSW	10	93,710,568 (GRCm38)	missense	probably benign	0.01
R7726:Ntn4	UTSW	10	93,733,682 (GRCm38)	missense	possibly damaging	0.82
R7957:Ntn4	UTSW	10	93,644,473 (GRCm38)	splice site	probably benign
R8092:Ntn4	UTSW	10	93,741,056 (GRCm38)	missense	probably damaging	0.97
R8202:Ntn4	UTSW	10	93,644,903 (GRCm38)	missense	possibly damaging	0.88
R8508:Ntn4	UTSW	10	93,741,104 (GRCm38)	missense	possibly damaging	0.48
R9008:Ntn4	UTSW	10	93,733,604 (GRCm38)	splice site	probably benign
R9010:Ntn4	UTSW	10	93,644,644 (GRCm38)	missense
R9115:Ntn4	UTSW	10	93,733,813 (GRCm38)	missense	probably benign
R9415:Ntn4	UTSW	10	93,644,626 (GRCm38)	missense	probably benign	0.00
RF045:Ntn4	UTSW	10	93,710,625 (GRCm38)	missense	possibly damaging	0.95
X0024:Ntn4	UTSW	10	93,644,971 (GRCm38)	missense	probably damaging	1.00
Z1176:Ntn4	UTSW	10	93,741,153 (GRCm38)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- GTGCCTTACAGATAAATGGGTATGAAG -3'
(R):5'- CATTCTTGGCTACTCAGGCC -3'

Sequencing Primer
(F):5'- AAGAAGTTGAAGGGAGGGTTTCTTTC -3'
(R):5'- ACTGCAGGCTGTTTCCAACG -3'

Posted On

2014-10-02