Mutagenetix > Incidental Mutation

Incidental Mutation 'R2204:Tmem39b'

238899

Institutional Source

Beutler Lab

Gene Symbol

Tmem39b

Ensembl Gene

ENSMUSG00000053730

Gene Name

transmembrane protein 39b

Synonyms

6330509E05Rik

MMRRC Submission

040206-MU

Accession Numbers

Essential gene?

Possibly non essential (E-score: 0.305) question?

Stock #

R2204 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

129570148-129590631 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to C at 129587716 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Serine to Alanine at position 32 (S32A)

Ref Sequence

ENSEMBL: ENSMUSP00000099648 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000102588] [ENSMUST00000125445] [ENSMUST00000137640] [ENSMUST00000147668]

AlphaFold

Q810L4

Predicted Effect

probably benign
Transcript: ENSMUST00000102588
AA Change: S32A

PolyPhen 2 Score 0.029 (Sensitivity: 0.95; Specificity: 0.82)

SMART Domains

Protein: ENSMUSP00000099648
Gene: ENSMUSG00000053730
AA Change: S32A

Domain	Start	End	E-Value	Type
Pfam:Tmp39	48	478	1.6e-207	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000125445
AA Change: S32A

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)

SMART Domains

Protein: ENSMUSP00000121505
Gene: ENSMUSG00000053730
AA Change: S32A

Domain	Start	End	E-Value	Type
Pfam:Tmp39	46	122	3.6e-32	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000137640

SMART Domains

Protein: ENSMUSP00000115156
Gene: ENSMUSG00000053730

Domain	Start	End	E-Value	Type
Pfam:Tmp39	1	70	1e-21	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000147668
AA Change: S32A

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000120048
Gene: ENSMUSG00000053730
AA Change: S32A

Domain	Start	End	E-Value	Type
Pfam:Tmp39	46	121	6.8e-32	PFAM

Coding Region Coverage

1x: 99.2%
3x: 98.7%
10x: 97.5%
20x: 95.8%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 62 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
A630076J17Rik	A	G	3: 107,140,943 (GRCm39)		probably benign	Het
Abca1	G	A	4: 53,090,291 (GRCm39)	T386I	probably damaging	Het
Acsf3	C	T	8: 123,540,383 (GRCm39)	S527F	probably damaging	Het
Adamts7	A	T	9: 90,062,729 (GRCm39)	K394N	probably damaging	Het
Ankrd2	C	A	19: 42,032,558 (GRCm39)	A273E	probably damaging	Het
Ankrd26	T	A	6: 118,500,843 (GRCm39)	H876L	possibly damaging	Het
Atg16l1	A	C	1: 87,694,737 (GRCm39)	Q138P	probably benign	Het
Bap1	T	C	14: 30,978,658 (GRCm39)	V23A	probably benign	Het
Cartpt	A	T	13: 100,037,133 (GRCm39)	S4T	probably benign	Het
Cdan1	C	A	2: 120,551,241 (GRCm39)	C1093F	probably damaging	Het
Ceacam11	C	T	7: 17,709,273 (GRCm39)	T157I	possibly damaging	Het
Cfap45	T	C	1: 172,359,728 (GRCm39)	V76A	probably benign	Het
Chil3	T	C	3: 106,071,562 (GRCm39)	D34G	probably benign	Het
Chrnb4	G	A	9: 54,951,132 (GRCm39)	R44C	probably damaging	Het
Col6a4	T	C	9: 105,937,331 (GRCm39)	D1395G	probably damaging	Het
Cpa1	A	G	6: 30,641,818 (GRCm39)	D214G	probably damaging	Het
Cttnbp2	T	G	6: 18,408,693 (GRCm39)	D976A	probably benign	Het
Elapor1	C	T	3: 108,382,359 (GRCm39)	G270E	probably damaging	Het
Espl1	A	G	15: 102,214,340 (GRCm39)	E693G	probably damaging	Het
Fat1	G	T	8: 45,476,737 (GRCm39)	A1928S	probably damaging	Het
Fiz1	C	T	7: 5,011,685 (GRCm39)	E278K	probably benign	Het
Flnc	C	T	6: 29,459,507 (GRCm39)	P2536S	probably damaging	Het
Gm6370	T	A	5: 146,430,539 (GRCm39)	D241E	probably benign	Het
Hlcs	T	C	16: 94,032,011 (GRCm39)	T451A	probably benign	Het
Hmgcr	A	G	13: 96,793,141 (GRCm39)	L497P	probably damaging	Het
Hmgcs2	T	A	3: 98,198,499 (GRCm39)	I134N	probably damaging	Het
Ifit1bl1	C	T	19: 34,571,741 (GRCm39)	E239K	probably benign	Het
Ift52	G	A	2: 162,873,150 (GRCm39)	S221N	probably benign	Het
Knstrn	T	A	2: 118,661,456 (GRCm39)		probably null	Het
Map3k14	T	A	11: 103,130,280 (GRCm39)	K212N	possibly damaging	Het
Ndufb7	A	G	8: 84,297,528 (GRCm39)	H61R	probably damaging	Het
Nop56	T	A	2: 130,119,488 (GRCm39)	I51N	probably damaging	Het
Nudt5	A	T	2: 5,860,794 (GRCm39)	I22F	possibly damaging	Het
Or10j2	T	A	1: 173,097,703 (GRCm39)		probably null	Het
Or4p23	C	G	2: 88,576,953 (GRCm39)	G93A	probably benign	Het
Or7d11	T	C	9: 19,966,507 (GRCm39)	N84S	possibly damaging	Het
P3h4	G	A	11: 100,304,832 (GRCm39)	A185V	probably benign	Het
Pdcl	A	T	2: 37,242,056 (GRCm39)	N231K	probably benign	Het
Plcb4	T	C	2: 135,844,514 (GRCm39)	I144T	probably benign	Het
Pramel32	A	T	4: 88,546,355 (GRCm39)	L329Q	probably damaging	Het
Prrc2b	C	A	2: 32,113,476 (GRCm39)	Q1970K	probably damaging	Het
Robo4	CGG	CG	9: 37,322,786 (GRCm39)		probably null	Het
Sars2	T	C	7: 28,449,099 (GRCm39)	V302A	possibly damaging	Het
Shroom3	G	T	5: 93,090,945 (GRCm39)	V1151F	probably damaging	Het
Spata31d1d	A	G	13: 59,879,435 (GRCm39)	C34R	possibly damaging	Het
Speg	A	T	1: 75,407,121 (GRCm39)	T3137S	probably benign	Het
Ssh3	A	G	19: 4,319,101 (GRCm39)	L3P	probably damaging	Het
Stard9	GAAA	GAA	2: 120,529,012 (GRCm39)		probably null	Het
Stoml2	G	T	4: 43,030,243 (GRCm39)	Y119*	probably null	Het
Susd1	A	G	4: 59,349,843 (GRCm39)	L531P	possibly damaging	Het
Taco1	C	T	11: 105,962,760 (GRCm39)	A149V	probably benign	Het
Tenm3	T	C	8: 49,127,585 (GRCm39)	E31G	probably benign	Het
Tmc1	A	T	19: 20,918,269 (GRCm39)	L2M	probably benign	Het
Tnfsf14	T	C	17: 57,497,638 (GRCm39)	D198G	possibly damaging	Het
Trabd2b	T	C	4: 114,460,191 (GRCm39)	L443P	probably damaging	Het
Trip4	T	A	9: 65,771,547 (GRCm39)	I328F	probably damaging	Het
Trpc3	A	G	3: 36,704,298 (GRCm39)	F553S	possibly damaging	Het
Tssk2	A	G	16: 17,716,603 (GRCm39)	D2G	possibly damaging	Het
Ttn	T	C	2: 76,601,985 (GRCm39)	N18559S	possibly damaging	Het
Vmn1r23	T	C	6: 57,903,604 (GRCm39)	D58G	probably benign	Het
Zbtb47	A	G	9: 121,591,703 (GRCm39)	T8A	possibly damaging	Het
Zfyve27	C	A	19: 42,171,885 (GRCm39)	A139D	probably damaging	Het

Other mutations in Tmem39b

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02215:Tmem39b	APN	4	129,586,311 (GRCm39)	critical splice acceptor site	probably null
IGL02423:Tmem39b	APN	4	129,572,442 (GRCm39)	missense	probably damaging	1.00
PIT4514001:Tmem39b	UTSW	4	129,578,290 (GRCm39)	missense	possibly damaging	0.48
R0502:Tmem39b	UTSW	4	129,580,779 (GRCm39)	missense	possibly damaging	0.95
R0503:Tmem39b	UTSW	4	129,580,779 (GRCm39)	missense	possibly damaging	0.95
R1483:Tmem39b	UTSW	4	129,570,456 (GRCm39)	missense	probably damaging	1.00
R1522:Tmem39b	UTSW	4	129,578,275 (GRCm39)	missense	probably benign	0.30
R1612:Tmem39b	UTSW	4	129,580,715 (GRCm39)	missense	possibly damaging	0.70
R1751:Tmem39b	UTSW	4	129,586,976 (GRCm39)	missense	possibly damaging	0.95
R1767:Tmem39b	UTSW	4	129,586,976 (GRCm39)	missense	possibly damaging	0.95
R1771:Tmem39b	UTSW	4	129,587,011 (GRCm39)	missense	probably damaging	0.99
R2140:Tmem39b	UTSW	4	129,572,481 (GRCm39)	missense	probably benign	0.30
R2202:Tmem39b	UTSW	4	129,587,716 (GRCm39)	missense	probably benign	0.03
R2205:Tmem39b	UTSW	4	129,587,716 (GRCm39)	missense	probably benign	0.03
R6176:Tmem39b	UTSW	4	129,586,894 (GRCm39)	missense	probably damaging	1.00
R6247:Tmem39b	UTSW	4	129,580,584 (GRCm39)	missense	possibly damaging	0.69
R6551:Tmem39b	UTSW	4	129,585,896 (GRCm39)	missense	probably benign
R6654:Tmem39b	UTSW	4	129,580,619 (GRCm39)	missense	probably damaging	1.00
R6934:Tmem39b	UTSW	4	129,572,366 (GRCm39)	missense	possibly damaging	0.51
R6988:Tmem39b	UTSW	4	129,586,941 (GRCm39)	missense	possibly damaging	0.92
R7614:Tmem39b	UTSW	4	129,587,694 (GRCm39)	missense	probably damaging	1.00
R8129:Tmem39b	UTSW	4	129,572,468 (GRCm39)	missense	probably damaging	0.99
R8708:Tmem39b	UTSW	4	129,570,191 (GRCm39)	unclassified	probably benign
R9249:Tmem39b	UTSW	4	129,572,468 (GRCm39)	missense	probably damaging	0.99
X0024:Tmem39b	UTSW	4	129,578,240 (GRCm39)	missense	possibly damaging	0.94
Z1088:Tmem39b	UTSW	4	129,586,270 (GRCm39)	missense	probably benign	0.03

Predicted Primers

PCR Primer
(F):5'- GCATCTCTCAGTGACCAACCTC -3'
(R):5'- TACCTGGAGCTCTGAGTAGG -3'

Sequencing Primer
(F):5'- AACCTCAGGGCTCACTCTG -3'
(R):5'- GGCTTCCATAAAGAGACCCTGTC -3'

Posted On

2014-10-02