Mutagenetix > Incidental Mutation

Incidental Mutation 'R2212:Zfyve28'

239442

Institutional Source

Beutler Lab

Gene Symbol

Zfyve28

Ensembl Gene

ENSMUSG00000037224

Gene Name

zinc finger, FYVE domain containing 28

Synonyms

9630058O20Rik

MMRRC Submission

040214-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R2212 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

34352237-34445793 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

C to T at 34357028 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Methionine to Isoleucine at position 723 (M723I)

Ref Sequence

ENSEMBL: ENSMUSP00000092464 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000094868]

AlphaFold

Q6ZPK7

Predicted Effect

probably benign
Transcript: ENSMUST00000094868
AA Change: M723I

PolyPhen 2 Score 0.017 (Sensitivity: 0.95; Specificity: 0.80)

SMART Domains

Protein: ENSMUSP00000092464
Gene: ENSMUSG00000037224
AA Change: M723I

Domain	Start	End	E-Value	Type
low complexity region	718	730	N/A	INTRINSIC
FYVE	827	896	8.73e-25	SMART

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 99.1%
3x: 98.5%
10x: 97.2%
20x: 94.9%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 64 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2700062C07Rik	A	G	18: 24,603,977 (GRCm39)	Y6C	probably damaging	Het
3425401B19Rik	T	A	14: 32,383,559 (GRCm39)	Q802L	probably benign	Het
Adarb2	T	C	13: 8,802,654 (GRCm39)	F643S	probably damaging	Het
Angptl4	A	G	17: 33,994,392 (GRCm39)	I401T	probably damaging	Het
Ap2a2	T	A	7: 141,178,689 (GRCm39)	N105K	probably benign	Het
Atp8b4	C	A	2: 126,217,677 (GRCm39)	W613L	probably damaging	Het
Cibar1	A	G	4: 12,171,696 (GRCm39)		probably null	Het
Coq10a	A	G	10: 128,200,998 (GRCm39)	V93A	possibly damaging	Het
Cyp4f39	A	T	17: 32,706,037 (GRCm39)	E376V	possibly damaging	Het
Deup1	A	T	9: 15,511,139 (GRCm39)	D213E	probably benign	Het
Ehmt2	A	G	17: 35,118,341 (GRCm39)	S39G	probably benign	Het
Eya1	T	A	1: 14,344,433 (GRCm39)		probably null	Het
Fcna	G	C	2: 25,517,505 (GRCm39)	P49A	probably damaging	Het
Flnb	AAGGAG	AAG	14: 7,881,652 (GRCm38)		probably benign	Het
Fscn2	G	T	11: 120,252,417 (GRCm39)		probably benign	Het
Gckr	T	A	5: 31,458,211 (GRCm39)		probably null	Het
Golgb1	A	G	16: 36,707,709 (GRCm39)	K68E	probably damaging	Het
H2-M11	G	A	17: 36,859,822 (GRCm39)	V272M	probably damaging	Het
Hace1	T	A	10: 45,524,771 (GRCm39)	D234E	possibly damaging	Het
Il18r1	A	T	1: 40,530,227 (GRCm39)	D318V	probably damaging	Het
Il4i1	T	C	7: 44,486,082 (GRCm39)	L22P	probably damaging	Het
Kcnq3	A	T	15: 65,892,142 (GRCm39)	F411Y	probably benign	Het
Kcnt2	A	G	1: 140,458,538 (GRCm39)	Y775C	probably damaging	Het
Krt84	A	C	15: 101,440,973 (GRCm39)	V73G	probably benign	Het
Lcp2	A	C	11: 34,020,995 (GRCm39)	D117A	probably benign	Het
Lemd1	C	A	1: 132,156,024 (GRCm39)	T22K	probably benign	Het
Mdm4	T	C	1: 132,922,260 (GRCm39)	D294G	probably damaging	Het
Mep1a	G	A	17: 43,788,154 (GRCm39)	A634V	probably benign	Het
Myh15	A	G	16: 48,959,095 (GRCm39)	D989G	probably benign	Het
Myo1g	G	T	11: 6,467,870 (GRCm39)	H188Q	possibly damaging	Het
Nsmaf	C	A	4: 6,396,732 (GRCm39)	L918F	probably damaging	Het
Or10d4	T	A	9: 39,580,524 (GRCm39)	M57K	probably damaging	Het
Or2v2	C	T	11: 49,004,043 (GRCm39)	C170Y	probably damaging	Het
Or51f5	T	C	7: 102,423,962 (GRCm39)	L77P	possibly damaging	Het
Or51q1	T	C	7: 103,628,609 (GRCm39)	L76P	probably damaging	Het
Pfkfb2	A	T	1: 130,635,269 (GRCm39)	N97K	probably damaging	Het
Phlda1	A	T	10: 111,343,029 (GRCm39)	E255V	probably damaging	Het
Pla2g4f	T	C	2: 120,133,587 (GRCm39)	S579G	probably benign	Het
Plcz1	C	T	6: 139,947,807 (GRCm39)	R525Q	probably damaging	Het
Ppargc1b	G	A	18: 61,444,291 (GRCm39)	Q291*	probably null	Het
Ppef2	T	G	5: 92,376,581 (GRCm39)	S649R	probably damaging	Het
Ppp1r3b	A	G	8: 35,851,379 (GRCm39)	T73A	possibly damaging	Het
Prss43	G	C	9: 110,658,532 (GRCm39)	Q277H	probably damaging	Het
Rusc2	T	G	4: 43,415,935 (GRCm39)	S414A	probably damaging	Het
Serpina3j	G	A	12: 104,280,985 (GRCm39)	D53N	probably damaging	Het
Sez6l	A	G	5: 112,623,227 (GRCm39)	L108P	possibly damaging	Het
Slc1a7	A	G	4: 107,868,191 (GRCm39)	E497G	probably benign	Het
Spag8	T	A	4: 43,651,606 (GRCm39)	S423C	probably damaging	Het
Spata13	A	G	14: 60,944,172 (GRCm39)	T522A	probably benign	Het
Spryd3	A	G	15: 102,038,711 (GRCm39)		probably null	Het
Sry	T	A	Y: 2,663,339 (GRCm39)	N107I	probably damaging	Het
St6galnac1	A	G	11: 116,656,682 (GRCm39)	W486R	probably damaging	Het
Syt1	G	T	10: 108,340,275 (GRCm39)	P348T	possibly damaging	Het
Taok2	T	C	7: 126,470,030 (GRCm39)	I933V	possibly damaging	Het
Tex9	C	A	9: 72,385,040 (GRCm39)	Q265H	possibly damaging	Het
Tmem63a	G	A	1: 180,790,679 (GRCm39)	D446N	possibly damaging	Het
Trim59	T	C	3: 68,944,876 (GRCm39)	T155A	probably benign	Het
Trim69	T	C	2: 122,009,125 (GRCm39)	V395A	probably benign	Het
Tusc1	C	A	4: 93,223,173 (GRCm39)	R162L	probably damaging	Het
Ubash3a	A	T	17: 31,437,008 (GRCm39)	Q208H	probably damaging	Het
Ubn2	A	G	6: 38,475,674 (GRCm39)	T1211A	probably benign	Het
Vmn2r110	A	T	17: 20,794,209 (GRCm39)		probably null	Het
Vrk3	C	T	7: 44,424,866 (GRCm39)	T427M	probably benign	Het
Zmynd8	A	T	2: 165,657,371 (GRCm39)	M533K	probably damaging	Het

Other mutations in Zfyve28

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00497:Zfyve28	APN	5	34,400,539 (GRCm39)	missense	probably damaging	0.98
IGL02201:Zfyve28	APN	5	34,400,549 (GRCm39)	missense	probably damaging	1.00
PIT4418001:Zfyve28	UTSW	5	34,390,721 (GRCm39)	missense	probably damaging	1.00
R0499:Zfyve28	UTSW	5	34,389,550 (GRCm39)	missense	possibly damaging	0.65
R1226:Zfyve28	UTSW	5	34,374,408 (GRCm39)	missense	probably benign	0.00
R1290:Zfyve28	UTSW	5	34,356,145 (GRCm39)	missense	probably benign	0.00
R1351:Zfyve28	UTSW	5	34,389,549 (GRCm39)	missense	probably damaging	1.00
R1418:Zfyve28	UTSW	5	34,374,590 (GRCm39)	missense	probably damaging	0.99
R2062:Zfyve28	UTSW	5	34,391,681 (GRCm39)	missense	probably null	0.73
R2443:Zfyve28	UTSW	5	34,374,238 (GRCm39)	missense	possibly damaging	0.64
R2851:Zfyve28	UTSW	5	34,354,006 (GRCm39)	missense	probably damaging	1.00
R2852:Zfyve28	UTSW	5	34,354,006 (GRCm39)	missense	probably damaging	1.00
R3412:Zfyve28	UTSW	5	34,357,028 (GRCm39)	missense	probably benign	0.02
R3413:Zfyve28	UTSW	5	34,357,028 (GRCm39)	missense	probably benign	0.02
R3694:Zfyve28	UTSW	5	34,374,812 (GRCm39)	missense	probably damaging	1.00
R4645:Zfyve28	UTSW	5	34,379,787 (GRCm39)	intron	probably benign
R4700:Zfyve28	UTSW	5	34,375,189 (GRCm39)	missense	probably damaging	1.00
R4938:Zfyve28	UTSW	5	34,390,698 (GRCm39)	missense	probably damaging	0.99
R5384:Zfyve28	UTSW	5	34,374,311 (GRCm39)	missense	probably damaging	1.00
R5908:Zfyve28	UTSW	5	34,374,214 (GRCm39)	missense	possibly damaging	0.62
R5936:Zfyve28	UTSW	5	34,382,332 (GRCm39)	missense	probably damaging	1.00
R6260:Zfyve28	UTSW	5	34,356,216 (GRCm39)	missense	probably damaging	0.99
R6862:Zfyve28	UTSW	5	34,445,449 (GRCm39)	missense	probably benign	0.10
R7172:Zfyve28	UTSW	5	34,391,753 (GRCm39)	missense	probably benign	0.42
R7243:Zfyve28	UTSW	5	34,356,219 (GRCm39)	missense	probably damaging	1.00
R7366:Zfyve28	UTSW	5	34,389,571 (GRCm39)	missense	probably damaging	1.00
R7598:Zfyve28	UTSW	5	34,393,461 (GRCm39)	missense	probably damaging	1.00
R7654:Zfyve28	UTSW	5	34,400,539 (GRCm39)	missense	probably damaging	1.00
R7752:Zfyve28	UTSW	5	34,382,326 (GRCm39)	missense	probably damaging	1.00
R7861:Zfyve28	UTSW	5	34,374,487 (GRCm39)	missense	probably damaging	1.00
R7878:Zfyve28	UTSW	5	34,356,999 (GRCm39)	missense	probably damaging	1.00
R7901:Zfyve28	UTSW	5	34,382,326 (GRCm39)	missense	probably damaging	1.00
R8116:Zfyve28	UTSW	5	34,374,944 (GRCm39)	missense	probably damaging	0.96
R8483:Zfyve28	UTSW	5	34,393,480 (GRCm39)	missense	possibly damaging	0.67
R8799:Zfyve28	UTSW	5	34,390,670 (GRCm39)	missense	probably damaging	1.00
R8883:Zfyve28	UTSW	5	34,375,211 (GRCm39)	critical splice acceptor site	probably null
R8912:Zfyve28	UTSW	5	34,374,655 (GRCm39)	missense	probably benign	0.01
R9179:Zfyve28	UTSW	5	34,382,376 (GRCm39)	missense	probably benign	0.01
R9228:Zfyve28	UTSW	5	34,374,788 (GRCm39)	missense	probably benign
R9381:Zfyve28	UTSW	5	34,373,932 (GRCm39)	missense	probably benign	0.09
R9432:Zfyve28	UTSW	5	34,400,633 (GRCm39)	missense	possibly damaging	0.92
R9509:Zfyve28	UTSW	5	34,354,892 (GRCm39)	missense	probably benign	0.36

Predicted Primers

PCR Primer
(F):5'- TCCACTTCAGCCAGAGAAAG -3'
(R):5'- GAGAACTTGTGGACCGACTTGC -3'

Sequencing Primer
(F):5'- CTAGATCACGCACCTGAA -3'
(R):5'- CCAAACCTAGCCTAGATGTTTGGG -3'

Posted On

2014-10-15