Mutagenetix > Incidental Mutation

Incidental Mutation 'R2227:Clec2d'

239785

Institutional Source

Beutler Lab

Gene Symbol

Clec2d

Ensembl Gene

ENSMUSG00000030157

Gene Name

C-type lectin domain family 2, member d

Synonyms

Clr-b, Clrb, Ocil

MMRRC Submission

040228-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R2227 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

129157578-129163497 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

G to A at 129161214 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Alanine to Threonine at position 104 (A104T)

Ref Sequence

ENSEMBL: ENSMUSP00000032260 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000032260]

AlphaFold

Q91V08

Predicted Effect

probably benign
Transcript: ENSMUST00000032260
AA Change: A104T

PolyPhen 2 Score 0.440 (Sensitivity: 0.89; Specificity: 0.90)

SMART Domains

Protein: ENSMUSP00000032260
Gene: ENSMUSG00000030157
AA Change: A104T

Domain	Start	End	E-Value	Type
low complexity region	51	66	N/A	INTRINSIC
CLECT	80	191	8.47e-23	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000183692

Coding Region Coverage

1x: 99.1%
3x: 98.5%
10x: 97.1%
20x: 94.3%

Validation Efficiency

MGI Phenotype

PHENOTYPE: Enhanced osteoclastic activity in the bone of homozygous null mice leads to osteopenia and high serum calcium levels. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 48 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930563I02Rik	T	A	14: 60,325,668 (GRCm39)		probably benign	Het
Abtb1	A	C	6: 88,813,349 (GRCm39)	L439R	probably damaging	Het
Adcy10	A	G	1: 165,345,829 (GRCm39)	T293A	probably damaging	Het
Agl	A	T	3: 116,581,961 (GRCm39)	V306D	possibly damaging	Het
Alpk2	T	A	18: 65,511,147 (GRCm39)	T17S	probably damaging	Het
Ar	T	A	X: 97,194,937 (GRCm39)	M517K	probably benign	Het
Atg9b	A	G	5: 24,591,393 (GRCm39)	V735A	possibly damaging	Het
BB014433	C	A	8: 15,091,717 (GRCm39)	A379S	probably benign	Het
Ccdc33	A	G	9: 57,989,305 (GRCm39)	S123P	probably damaging	Het
Ccl2	G	T	11: 81,927,427 (GRCm39)		probably null	Het
Cct2	T	C	10: 116,888,922 (GRCm39)	R526G	probably null	Het
Cep55	T	C	19: 38,051,082 (GRCm39)	M164T	probably benign	Het
Cyp3a11	A	G	5: 145,805,357 (GRCm39)	L220P	possibly damaging	Het
Dgkk	T	A	X: 6,741,487 (GRCm39)	D102E	probably damaging	Het
Emcn	T	C	3: 137,109,778 (GRCm39)	I140T	possibly damaging	Het
Exoc2	T	A	13: 31,048,867 (GRCm39)	I729L	probably benign	Het
Fbxl20	T	C	11: 97,981,675 (GRCm39)	I338V	probably benign	Het
Gucy2c	G	A	6: 136,679,758 (GRCm39)	T943I	probably damaging	Het
Hdac9	C	T	12: 34,457,801 (GRCm39)	V251I	probably benign	Het
Hoxa10	T	C	6: 52,209,616 (GRCm39)	E52G	probably damaging	Het
Il17rb	A	T	14: 29,728,038 (GRCm39)	S56R	probably benign	Het
Knl1	A	G	2: 118,902,481 (GRCm39)	D1394G	probably damaging	Het
Kpna1	G	A	16: 35,851,591 (GRCm39)	A392T	probably damaging	Het
Krt6b	A	G	15: 101,587,557 (GRCm39)	V179A	probably damaging	Het
Lpar5	A	T	6: 125,058,098 (GRCm39)		probably null	Het
Marchf7	A	G	2: 60,060,190 (GRCm39)	R106G	probably benign	Het
Mtus1	C	T	8: 41,535,812 (GRCm39)	V635M	probably damaging	Het
Myl1	T	C	1: 66,983,974 (GRCm39)	K31E	possibly damaging	Het
Myt1l	T	A	12: 29,876,969 (GRCm39)	L207I	unknown	Het
Naalad2	A	T	9: 18,287,829 (GRCm39)	V267E	possibly damaging	Het
Pkhd1l1	T	C	15: 44,376,188 (GRCm39)	I950T	possibly damaging	Het
Ppp1r9a	G	T	6: 5,154,074 (GRCm39)	R1081L	probably benign	Het
Rc3h1	T	C	1: 160,791,112 (GRCm39)	I932T	probably benign	Het
Rubcnl	G	A	14: 75,279,832 (GRCm39)	R405Q	probably benign	Het
Saxo5	A	G	8: 3,529,249 (GRCm39)	T245A	probably benign	Het
Sgsm3	A	G	15: 80,888,069 (GRCm39)	E53G	probably damaging	Het
Slco1a8	T	G	6: 141,938,087 (GRCm39)	E277D	possibly damaging	Het
Spin2g	A	T	X: 33,656,599 (GRCm39)	I171N	possibly damaging	Het
Srsf6	G	A	2: 162,773,619 (GRCm39)	S10N	probably damaging	Het
Tesl2	T	A	X: 23,825,173 (GRCm39)	M1L	probably null	Het
Thoc2l	T	A	5: 104,667,286 (GRCm39)	Y603N	probably damaging	Het
Tnn	A	T	1: 159,975,035 (GRCm39)	C131S	probably damaging	Het
Tnnt2	A	G	1: 135,771,529 (GRCm39)		probably benign	Het
Tns2	C	T	15: 102,017,369 (GRCm39)	R281C	probably damaging	Het
Vmn1r86	T	C	7: 12,836,847 (GRCm39)	I10V	probably benign	Het
Xpot	T	C	10: 121,458,765 (GRCm39)	R20G	probably damaging	Het
Zfp735	T	A	11: 73,602,222 (GRCm39)	L389I	possibly damaging	Het
Zfp735	T	G	11: 73,602,223 (GRCm39)	L389*	probably null	Het

Other mutations in Clec2d

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01691:Clec2d	APN	6	129,161,185 (GRCm39)	missense	probably damaging	1.00
IGL01984:Clec2d	APN	6	129,161,192 (GRCm39)	missense	possibly damaging	0.89
IGL03071:Clec2d	APN	6	129,160,165 (GRCm39)	missense	probably benign	0.30
R0626:Clec2d	UTSW	6	129,160,090 (GRCm39)	missense	probably damaging	0.98
R0900:Clec2d	UTSW	6	129,160,076 (GRCm39)	missense	probably benign	0.00
R2077:Clec2d	UTSW	6	129,160,153 (GRCm39)	missense	possibly damaging	0.80
R2200:Clec2d	UTSW	6	129,161,831 (GRCm39)	missense	possibly damaging	0.80
R4826:Clec2d	UTSW	6	129,161,122 (GRCm39)	missense	probably benign	0.00
R5040:Clec2d	UTSW	6	129,161,793 (GRCm39)	missense	probably damaging	1.00
R6763:Clec2d	UTSW	6	129,161,107 (GRCm39)	missense	probably benign	0.06
R8121:Clec2d	UTSW	6	129,161,847 (GRCm39)	missense	probably benign	0.04

Predicted Primers

PCR Primer
(F):5'- TCAGGAGGGTGTGCCAAAAC -3'
(R):5'- AAGTCAAGCATCAGCAAATGGC -3'

Sequencing Primer
(F):5'- ACGAGAGAAGACCTGCTTGCC -3'
(R):5'- TGGCACACACTCACATTCCCTATG -3'

Posted On

2014-10-15