Mutagenetix > Incidental Mutation

Incidental Mutation 'R2232:Trmt9b'

240109

Institutional Source

Beutler Lab

Gene Symbol

Trmt9b

Ensembl Gene

ENSMUSG00000039620

Gene Name

tRNA methyltransferase 9B

Synonyms

6430573F11Rik

MMRRC Submission

040233-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.070) question?

Stock #

R2232 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

36924643-36981738 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 36979707 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Cysteine to Serine at position 437 (C437S)

Ref Sequence

ENSEMBL: ENSMUSP00000119912 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000135373] [ENSMUST00000147525] [ENSMUST00000152039] [ENSMUST00000171777]

AlphaFold

Q80WQ4

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000125492

Predicted Effect

probably benign
Transcript: ENSMUST00000135373

SMART Domains

Protein: ENSMUSP00000120524
Gene: ENSMUSG00000039620

Domain	Start	End	E-Value	Type
Pfam:Methyltransf_11	49	114	7.7e-9	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000147525
AA Change: C437S

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000119912
Gene: ENSMUSG00000039620
AA Change: C437S

Domain	Start	End	E-Value	Type
Pfam:Methyltransf_8	4	158	3.6e-9	PFAM
Pfam:Ubie_methyltran	9	153	2.9e-7	PFAM
Pfam:Methyltransf_23	23	184	4.2e-12	PFAM
Pfam:Methyltransf_31	42	186	1.3e-10	PFAM
Pfam:Methyltransf_25	48	135	4.2e-9	PFAM
Pfam:Methyltransf_12	49	137	4.1e-11	PFAM
Pfam:Methyltransf_11	49	139	3.6e-18	PFAM
low complexity region	377	387	N/A	INTRINSIC
low complexity region	410	430	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000152039

SMART Domains

Protein: ENSMUSP00000119288
Gene: ENSMUSG00000039620

Domain	Start	End	E-Value	Type
Pfam:Methyltransf_11	49	109	2.9e-8	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000171777
AA Change: C437S

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000127875
Gene: ENSMUSG00000039620
AA Change: C437S

Domain	Start	End	E-Value	Type
Pfam:Methyltransf_8	4	158	3.6e-9	PFAM
Pfam:Ubie_methyltran	9	153	2.9e-7	PFAM
Pfam:Methyltransf_23	23	186	1.5e-11	PFAM
Pfam:Methyltransf_31	42	186	3.5e-10	PFAM
Pfam:Methyltransf_25	48	135	4.3e-9	PFAM
Pfam:Methyltransf_12	49	137	4.1e-11	PFAM
Pfam:Methyltransf_11	49	139	3.2e-18	PFAM
low complexity region	377	387	N/A	INTRINSIC
low complexity region	410	430	N/A	INTRINSIC

Meta Mutation Damage Score

0.6908

Coding Region Coverage

1x: 99.1%
3x: 98.5%
10x: 97.1%
20x: 94.4%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 57 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adam1a	A	C	5: 121,657,795 (GRCm39)	D499E	possibly damaging	Het
Adamtsl2	G	A	2: 26,993,190 (GRCm39)	G740E	probably damaging	Het
Adgrf4	C	T	17: 42,977,789 (GRCm39)	R518Q	possibly damaging	Het
Akap9	G	A	5: 4,096,603 (GRCm39)	V2493I	probably damaging	Het
Ankra2	T	C	13: 98,407,646 (GRCm39)	F199L	probably damaging	Het
Ankrd63	A	G	2: 118,533,846 (GRCm39)		probably benign	Het
Asns	A	G	6: 7,689,316 (GRCm39)	I62T	possibly damaging	Het
Celf3	T	A	3: 94,387,566 (GRCm39)		probably null	Het
Cyp4f37	A	G	17: 32,853,244 (GRCm39)	T403A	probably benign	Het
Dennd2b	T	C	7: 109,156,414 (GRCm39)	D112G	probably benign	Het
Dgkd	T	A	1: 87,857,464 (GRCm39)	S725R	probably benign	Het
Dnah5	G	A	15: 28,408,563 (GRCm39)		probably null	Het
Entrep2	G	A	7: 64,408,970 (GRCm39)	H475Y	probably damaging	Het
Ergic3	A	G	2: 155,859,736 (GRCm39)	T346A	probably damaging	Het
Fam227a	T	A	15: 79,499,582 (GRCm39)	Y591F	possibly damaging	Het
Gal3st1	T	C	11: 3,948,282 (GRCm39)	I163T	probably benign	Het
Ghrhr	T	C	6: 55,362,444 (GRCm39)	F347S	probably damaging	Het
Htr2a	A	T	14: 74,882,469 (GRCm39)	I152F	probably damaging	Het
Il17re	T	C	6: 113,441,761 (GRCm39)	C219R	probably damaging	Het
Kansl2	A	G	15: 98,422,359 (GRCm39)	L403S	probably damaging	Het
Kif21a	G	A	15: 90,869,565 (GRCm39)	Q429*	probably null	Het
L1cam	T	A	X: 72,904,947 (GRCm39)	N503I	possibly damaging	Het
Lrrk2	A	G	15: 91,648,919 (GRCm39)	K1638E	probably benign	Het
Mcpt9	A	T	14: 56,265,445 (GRCm39)	C85S	probably benign	Het
Mindy3	C	A	2: 12,408,856 (GRCm39)	R73M	probably benign	Het
Mrgprb3	T	C	7: 48,292,770 (GRCm39)	I260M	probably benign	Het
Nes	T	A	3: 87,886,238 (GRCm39)	I1499N	possibly damaging	Het
Ninl	A	G	2: 150,791,970 (GRCm39)	V851A	probably benign	Het
Oaz3	T	C	3: 94,341,846 (GRCm39)	T130A	probably benign	Het
Or10j7	A	G	1: 173,011,182 (GRCm39)	I273T	probably benign	Het
Or4c3d	A	T	2: 89,882,569 (GRCm39)	F33Y	probably benign	Het
Pacs2	G	A	12: 113,026,987 (GRCm39)	D605N	probably damaging	Het
Pcare	A	G	17: 72,056,279 (GRCm39)	S1133P	probably benign	Het
Pdk3	G	T	X: 92,857,604 (GRCm39)	N59K	probably damaging	Het
Pigq	T	C	17: 26,151,183 (GRCm39)	H322R	probably benign	Het
Ppp3r1	G	A	11: 17,143,115 (GRCm39)	G68R	probably damaging	Het
Proz	A	G	8: 13,113,356 (GRCm39)	Y59C	probably damaging	Het
Prpf39	C	T	12: 65,090,786 (GRCm39)	R32*	probably null	Het
Prr5	T	C	15: 84,586,981 (GRCm39)	S244P	probably benign	Het
Pth2r	G	T	1: 65,375,928 (GRCm39)	W62L	probably damaging	Het
Scin	T	A	12: 40,118,930 (GRCm39)	K622I	probably damaging	Het
Serpinb6a	T	C	13: 34,109,303 (GRCm39)	K143R	probably damaging	Het
Ska1	G	T	18: 74,330,137 (GRCm39)		probably null	Het
Slc30a8	G	T	15: 52,169,960 (GRCm39)	R62S	probably benign	Het
Slc8a3	A	C	12: 81,361,994 (GRCm39)	I275S	probably damaging	Het
Sp2	C	T	11: 96,846,762 (GRCm39)	C527Y	probably damaging	Het
Spmap2l	A	G	5: 77,207,252 (GRCm39)	I337V	possibly damaging	Het
Sspo	A	G	6: 48,425,606 (GRCm39)	I76V	probably damaging	Het
Sult1c2	G	T	17: 54,138,848 (GRCm39)	T243K	probably benign	Het
Svil	T	A	18: 5,046,640 (GRCm39)	M1K	probably null	Het
Tet3	T	C	6: 83,346,453 (GRCm39)	D1328G	probably damaging	Het
Tnfsf14	T	C	17: 57,500,876 (GRCm39)	D65G	probably benign	Het
Ttc3	T	C	16: 94,260,831 (GRCm39)	S1439P	probably benign	Het
Ttn	A	T	2: 76,774,497 (GRCm39)	F2136L	probably damaging	Het
Usb1	T	G	8: 96,070,674 (GRCm39)	L200R	probably damaging	Het
Usp20	A	G	2: 30,908,750 (GRCm39)	N777S	probably benign	Het
Zfp92	G	T	X: 72,466,358 (GRCm39)	L450F	possibly damaging	Het

Other mutations in Trmt9b

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00518:Trmt9b	APN	8	36,979,453 (GRCm39)	missense	possibly damaging	0.90
IGL01360:Trmt9b	APN	8	36,979,713 (GRCm39)	missense	probably benign	0.08
IGL01364:Trmt9b	APN	8	36,979,501 (GRCm39)	missense	probably benign	0.03
IGL03401:Trmt9b	APN	8	36,972,823 (GRCm39)	missense	probably damaging	1.00
Bear_market	UTSW	8	36,965,637 (GRCm39)	critical splice donor site	probably null
R2161:Trmt9b	UTSW	8	36,972,804 (GRCm39)	missense	probably damaging	1.00
R2230:Trmt9b	UTSW	8	36,979,707 (GRCm39)	missense	probably damaging	1.00
R4250:Trmt9b	UTSW	8	36,979,366 (GRCm39)	missense	probably benign	0.05
R4432:Trmt9b	UTSW	8	36,965,632 (GRCm39)	missense	probably damaging	1.00
R4491:Trmt9b	UTSW	8	36,972,760 (GRCm39)	missense	probably damaging	1.00
R5242:Trmt9b	UTSW	8	36,979,084 (GRCm39)	missense	probably benign	0.02
R5261:Trmt9b	UTSW	8	36,979,078 (GRCm39)	missense	probably benign	0.07
R5482:Trmt9b	UTSW	8	36,979,203 (GRCm39)	missense	probably benign
R5579:Trmt9b	UTSW	8	36,979,195 (GRCm39)	missense	probably benign	0.00
R5594:Trmt9b	UTSW	8	36,979,452 (GRCm39)	missense	probably benign	0.00
R5797:Trmt9b	UTSW	8	36,965,569 (GRCm39)	nonsense	probably null
R6481:Trmt9b	UTSW	8	36,965,637 (GRCm39)	critical splice donor site	probably null
R7504:Trmt9b	UTSW	8	36,979,309 (GRCm39)	missense	probably benign	0.03
R8119:Trmt9b	UTSW	8	36,965,576 (GRCm39)	nonsense	probably null
R8169:Trmt9b	UTSW	8	36,978,857 (GRCm39)	missense	probably damaging	0.97
R8962:Trmt9b	UTSW	8	36,972,729 (GRCm39)	missense	probably damaging	1.00
R9034:Trmt9b	UTSW	8	36,978,954 (GRCm39)	nonsense	probably null
R9035:Trmt9b	UTSW	8	36,978,954 (GRCm39)	nonsense	probably null
R9647:Trmt9b	UTSW	8	36,979,210 (GRCm39)	missense	probably benign	0.00
X0057:Trmt9b	UTSW	8	36,979,142 (GRCm39)	nonsense	probably null
X0065:Trmt9b	UTSW	8	36,979,010 (GRCm39)	missense	possibly damaging	0.71

Predicted Primers

PCR Primer
(F):5'- GCATTCGACTCCAACGACTC -3'
(R):5'- AGTACGTGTCAGACTTCGTG -3'

Sequencing Primer
(F):5'- CCAACTCAGAAGACTCAAGCTTTTTG -3'
(R):5'- AGTACGTGTCAGACTTCGTGCTTAC -3'

Posted On

2014-10-15