Mutagenetix > Incidental Mutation

Incidental Mutation 'R2240:Tmcc1'

240312

Institutional Source

Beutler Lab

Gene Symbol

Tmcc1

Ensembl Gene

ENSMUSG00000030126

Gene Name

transmembrane and coiled coil domains 1

Synonyms

3632431M01Rik

MMRRC Submission

040240-MU

Accession Numbers

Essential gene?

Possibly non essential (E-score: 0.302) question?

Stock #

R2240 (G1)

Quality Score

115

Status

Not validated

Chromosome

Chromosomal Location

115995572-116170447 bp(-) (GRCm39)

Type of Mutation

frame shift

DNA Base Change (assembly)

C to CAT at 116019831 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000144971 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000088896] [ENSMUST00000172510] [ENSMUST00000173110] [ENSMUST00000173140] [ENSMUST00000173548] [ENSMUST00000204353]

AlphaFold

Q69ZZ6

Predicted Effect

probably null
Transcript: ENSMUST00000032222

SMART Domains

Protein: ENSMUSP00000032222
Gene: ENSMUSG00000030126

Domain	Start	End	E-Value	Type
low complexity region	153	164	N/A	INTRINSIC
Pfam:Tmemb_cc2	268	677	9.7e-170	PFAM

Predicted Effect

probably null
Transcript: ENSMUST00000088896

SMART Domains

Protein: ENSMUSP00000086285
Gene: ENSMUSG00000030126

Domain	Start	End	E-Value	Type
low complexity region	156	167	N/A	INTRINSIC
Pfam:Tmemb_cc2	227	636	2.3e-170	PFAM

Predicted Effect

probably null
Transcript: ENSMUST00000172510

SMART Domains

Protein: ENSMUSP00000133665
Gene: ENSMUSG00000030126

Domain	Start	End	E-Value	Type
Pfam:Tmemb_cc2	1	188	6.5e-95	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000172909

SMART Domains

Protein: ENSMUSP00000134407
Gene: ENSMUSG00000030126

Domain	Start	End	E-Value	Type
low complexity region	14	25	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000173110

SMART Domains

Protein: ENSMUSP00000133794
Gene: ENSMUSG00000030126

Domain	Start	End	E-Value	Type
low complexity region	156	167	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000173140

SMART Domains

Protein: ENSMUSP00000134455
Gene: ENSMUSG00000030126

Domain	Start	End	E-Value	Type
Pfam:Tmemb_cc2	1	79	6.1e-20	PFAM

Predicted Effect

probably null
Transcript: ENSMUST00000173548

SMART Domains

Protein: ENSMUSP00000145456
Gene: ENSMUSG00000030126

Domain	Start	End	E-Value	Type
Pfam:Tmemb_cc2	48	457	1.5e-167	PFAM

Predicted Effect

probably null
Transcript: ENSMUST00000204353

SMART Domains

Protein: ENSMUSP00000144971
Gene: ENSMUSG00000030126

Domain	Start	End	E-Value	Type
Pfam:Tmemb_cc2	52	461	8.3e-171	PFAM

Coding Region Coverage

1x: 99.2%
3x: 98.7%
10x: 97.4%
20x: 95.5%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 74 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca3	T	A	17: 24,595,417 (GRCm39)	I318N	probably damaging	Het
Abl1	A	G	2: 31,690,517 (GRCm39)	K679E	probably benign	Het
Actr8	A	G	14: 29,711,714 (GRCm39)	H420R	possibly damaging	Het
Arhgap29	T	A	3: 121,805,102 (GRCm39)	V897D	probably benign	Het
Bckdk	C	A	7: 127,504,590 (GRCm39)	R105S	probably damaging	Het
Bicc1	A	G	10: 70,782,633 (GRCm39)		probably null	Het
Brd4	T	C	17: 32,432,613 (GRCm39)		probably benign	Het
Camk2g	T	C	14: 20,815,514 (GRCm39)	E184G	probably damaging	Het
Camta1	T	C	4: 151,169,032 (GRCm39)	S240G	possibly damaging	Het
Cbx7	C	A	15: 79,802,558 (GRCm39)	A240S	probably damaging	Het
Ccdc181	A	T	1: 164,107,596 (GRCm39)	D93V	probably damaging	Het
Ces2g	A	C	8: 105,689,134 (GRCm39)	S37R	probably benign	Het
Clca3a1	T	A	3: 144,714,746 (GRCm39)	R624W	probably damaging	Het
Clca3b	T	C	3: 144,531,696 (GRCm39)	K703E	probably benign	Het
Clec2h	T	C	6: 128,652,845 (GRCm39)	V204A	probably benign	Het
Cltb	T	C	13: 54,746,967 (GRCm39)	N3S	possibly damaging	Het
Col9a1	A	G	1: 24,218,582 (GRCm39)	I65V	unknown	Het
D430041D05Rik	C	T	2: 103,987,161 (GRCm39)	R1895Q	probably damaging	Het
Dnah1	T	C	14: 31,021,931 (GRCm39)	S1191G	probably benign	Het
Ehf	G	A	2: 103,104,420 (GRCm39)	P163S	probably benign	Het
Fam170b	A	C	14: 32,557,825 (GRCm39)	H220P	probably damaging	Het
Fastkd1	G	A	2: 69,527,297 (GRCm39)	T598I	probably benign	Het
Fignl2	C	T	15: 100,951,916 (GRCm39)	G122D	probably damaging	Het
Foxp4	C	A	17: 48,182,201 (GRCm39)	V530L	unknown	Het
Gcnt1	G	T	19: 17,306,695 (GRCm39)	D343E	possibly damaging	Het
Gja8	T	G	3: 96,827,618 (GRCm39)	N15H	probably benign	Het
Gm128	T	C	3: 95,148,243 (GRCm39)	E17G	probably benign	Het
Gnl1	T	C	17: 36,293,571 (GRCm39)	V252A	probably benign	Het
Gpld1	G	A	13: 25,166,490 (GRCm39)		probably null	Het
Gpr179	A	G	11: 97,242,559 (GRCm39)	L95P	probably damaging	Het
Gtf2a1	A	T	12: 91,553,513 (GRCm39)	D31E	possibly damaging	Het
Il12a	T	A	3: 68,601,517 (GRCm39)	Y58*	probably null	Het
Il1r2	T	C	1: 40,144,630 (GRCm39)	W106R	probably damaging	Het
Kif26b	A	G	1: 178,543,488 (GRCm39)	S374G	probably benign	Het
Mafb	A	T	2: 160,207,947 (GRCm39)	V217E	probably damaging	Het
Mapk13	T	A	17: 28,997,085 (GRCm39)	D292E	probably damaging	Het
Matn2	A	G	15: 34,433,209 (GRCm39)	D871G	probably damaging	Het
Mdn1	C	A	4: 32,765,701 (GRCm39)	T5220K	possibly damaging	Het
Mfsd6	T	C	1: 52,699,978 (GRCm39)	I723M	probably damaging	Het
Mia2	G	A	12: 59,154,668 (GRCm39)	S127N	probably benign	Het
Mpeg1	A	C	19: 12,440,402 (GRCm39)	E620A	probably damaging	Het
Mrgprb3	A	T	7: 48,293,389 (GRCm39)	F54Y	probably damaging	Het
Mtx2	A	G	2: 74,699,696 (GRCm39)	I156V	probably benign	Het
Neurog1	T	C	13: 56,399,348 (GRCm39)	E133G	probably damaging	Het
Nid2	G	A	14: 19,855,982 (GRCm39)	D1236N	probably damaging	Het
Nif3l1	A	G	1: 58,491,288 (GRCm39)	T213A	probably benign	Het
Or7e173	A	G	9: 19,938,440 (GRCm39)	S265P	probably damaging	Het
Otog	A	G	7: 45,890,453 (GRCm39)	M1V	probably null	Het
Pde4dip	C	T	3: 97,631,480 (GRCm39)	R1143K	probably benign	Het
Pgam2	T	C	11: 5,753,265 (GRCm39)		probably benign	Het
Plec	T	C	15: 76,090,250 (GRCm39)	D30G	probably damaging	Het
Pramel5	C	A	4: 143,999,506 (GRCm39)	E194*	probably null	Het
Prss22	T	A	17: 24,215,755 (GRCm39)	S56C	probably damaging	Het
Rab23	A	G	1: 33,778,406 (GRCm39)	N216S	probably benign	Het
Rasgrf1	A	T	9: 89,858,815 (GRCm39)	E491V	probably damaging	Het
Rbbp8	C	T	18: 11,810,726 (GRCm39)	T76I	probably damaging	Het
Rtn2	G	A	7: 19,020,754 (GRCm39)		probably null	Het
Sdr39u1	A	T	14: 56,137,124 (GRCm39)	N62K	probably damaging	Het
Secisbp2l	C	T	2: 125,582,657 (GRCm39)	G933D	possibly damaging	Het
Slc26a3	T	C	12: 31,507,071 (GRCm39)	V342A	probably damaging	Het
Slc49a3	A	G	5: 108,592,573 (GRCm39)	S234P	probably benign	Het
Snx30	G	T	4: 59,886,515 (GRCm39)	C308F	probably damaging	Het
Timd2	A	T	11: 46,569,043 (GRCm39)	V205E	probably benign	Het
Tnfaip6	G	A	2: 51,940,926 (GRCm39)	D156N	probably benign	Het
Uggt2	T	A	14: 119,232,461 (GRCm39)	E1463D	probably damaging	Het
Urb2	C	A	8: 124,756,878 (GRCm39)	P862T	probably benign	Het
Vmn1r64	A	T	7: 5,887,369 (GRCm39)	L58*	probably null	Het
Vmn2r3	C	A	3: 64,166,483 (GRCm39)	G883C	probably benign	Het
Vps13d	A	T	4: 144,837,465 (GRCm39)	C2707S	possibly damaging	Het
Wdr11	G	T	7: 129,207,418 (GRCm39)		probably null	Het
Wdr37	T	A	13: 8,911,268 (GRCm39)		probably benign	Het
Wtap	G	A	17: 13,194,352 (GRCm39)	Q95*	probably null	Het
Zfp26	A	T	9: 20,348,563 (GRCm39)	L667H	probably damaging	Het
Zfp268	C	T	4: 145,311,891 (GRCm39)		probably benign	Het

Other mutations in Tmcc1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01023:Tmcc1	APN	6	116,019,988 (GRCm39)	missense	probably damaging	0.99
IGL01580:Tmcc1	APN	6	116,019,946 (GRCm39)	missense	possibly damaging	0.91
IGL02858:Tmcc1	APN	6	116,110,849 (GRCm39)	missense	probably damaging	0.99
IGL03226:Tmcc1	APN	6	116,110,937 (GRCm39)	missense	probably damaging	0.99
Dominus_dei	UTSW	6	116,111,198 (GRCm39)	nonsense	probably null
FR4976:Tmcc1	UTSW	6	116,170,341 (GRCm39)	start gained	probably benign
IGL02988:Tmcc1	UTSW	6	116,019,889 (GRCm39)	missense	probably damaging	1.00
PIT4581001:Tmcc1	UTSW	6	116,020,417 (GRCm39)	missense
R0522:Tmcc1	UTSW	6	116,019,831 (GRCm39)	frame shift	probably null
R0654:Tmcc1	UTSW	6	116,019,951 (GRCm39)	missense	probably benign	0.03
R0721:Tmcc1	UTSW	6	116,019,831 (GRCm39)	frame shift	probably null
R1392:Tmcc1	UTSW	6	115,999,071 (GRCm39)	missense	possibly damaging	0.84
R1573:Tmcc1	UTSW	6	116,110,924 (GRCm39)	missense	probably damaging	0.99
R1644:Tmcc1	UTSW	6	116,110,826 (GRCm39)	missense	probably damaging	1.00
R2062:Tmcc1	UTSW	6	116,020,019 (GRCm39)	missense	probably benign	0.01
R2065:Tmcc1	UTSW	6	116,019,831 (GRCm39)	frame shift	probably null
R2214:Tmcc1	UTSW	6	116,019,831 (GRCm39)	frame shift	probably null
R2399:Tmcc1	UTSW	6	116,019,831 (GRCm39)	frame shift	probably null
R3683:Tmcc1	UTSW	6	116,019,831 (GRCm39)	frame shift	probably null
R3722:Tmcc1	UTSW	6	116,110,783 (GRCm39)	missense	possibly damaging	0.83
R3926:Tmcc1	UTSW	6	116,019,874 (GRCm39)	missense	probably damaging	1.00
R4082:Tmcc1	UTSW	6	116,020,441 (GRCm39)	missense	probably damaging	1.00
R4155:Tmcc1	UTSW	6	116,110,765 (GRCm39)	missense	probably benign	0.18
R4619:Tmcc1	UTSW	6	116,020,247 (GRCm39)	missense	probably damaging	1.00
R5246:Tmcc1	UTSW	6	116,020,381 (GRCm39)	missense	probably damaging	1.00
R5568:Tmcc1	UTSW	6	115,999,071 (GRCm39)	missense	possibly damaging	0.84
R6364:Tmcc1	UTSW	6	116,020,722 (GRCm39)	start gained	probably benign
R7238:Tmcc1	UTSW	6	116,111,198 (GRCm39)	nonsense	probably null
R7257:Tmcc1	UTSW	6	116,084,299 (GRCm39)	missense	probably benign	0.27
R7603:Tmcc1	UTSW	6	116,020,092 (GRCm39)	nonsense	probably null
R7693:Tmcc1	UTSW	6	116,001,843 (GRCm39)	missense
R7694:Tmcc1	UTSW	6	116,110,805 (GRCm39)	missense
R7698:Tmcc1	UTSW	6	116,020,763 (GRCm39)	nonsense	probably null
R7798:Tmcc1	UTSW	6	116,020,539 (GRCm39)	missense
R8158:Tmcc1	UTSW	6	116,020,435 (GRCm39)	missense
R8808:Tmcc1	UTSW	6	116,111,099 (GRCm39)	missense
R8808:Tmcc1	UTSW	6	116,111,098 (GRCm39)	missense
R9222:Tmcc1	UTSW	6	116,020,049 (GRCm39)	missense
R9369:Tmcc1	UTSW	6	116,111,050 (GRCm39)	missense	probably benign	0.16
R9753:Tmcc1	UTSW	6	115,999,071 (GRCm39)	missense	possibly damaging	0.84

Predicted Primers

PCR Primer
(F):5'- CGCGTTAAAGTCATAAACTGGG -3'
(R):5'- CTCAGTAGGAGCCAACAGTACC -3'

Sequencing Primer
(F):5'- AAGAAATGTTGCATCTGTGTGTGATC -3'
(R):5'- AGTACCACTGGGGGCATTG -3'

Posted On

2014-10-15