Mutagenetix > Incidental Mutation

Incidental Mutation 'R2235:Trim65'

240406

Institutional Source

Beutler Lab

Gene Symbol

Trim65

Ensembl Gene

ENSMUSG00000054517

Gene Name

tripartite motif-containing 65

Synonyms

4732463G12Rik

MMRRC Submission

040236-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R2235 (G1)

Quality Score

109

Status

Not validated

Chromosome

Chromosomal Location

116012672-116021954 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

G to T at 116021503 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Lysine at position 110 (T110K)

Ref Sequence

ENSEMBL: ENSMUSP00000102048 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000067632] [ENSMUST00000106439] [ENSMUST00000106440]

AlphaFold

Q8BFW4

Predicted Effect

possibly damaging
Transcript: ENSMUST00000067632
AA Change: T110K

PolyPhen 2 Score 0.908 (Sensitivity: 0.81; Specificity: 0.94)

SMART Domains

Protein: ENSMUSP00000063410
Gene: ENSMUSG00000054517
AA Change: T110K

Domain	Start	End	E-Value	Type
RING	13	51	2.47e-9	SMART
low complexity region	69	85	N/A	INTRINSIC
Blast:BBOX	94	132	3e-10	BLAST
coiled coil region	140	175	N/A	INTRINSIC
low complexity region	282	298	N/A	INTRINSIC
PRY	333	383	3.67e-3	SMART
Pfam:SPRY	386	505	1.5e-10	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000106439

SMART Domains

Protein: ENSMUSP00000102047
Gene: ENSMUSG00000020775

Domain	Start	End	E-Value	Type
low complexity region	55	67	N/A	INTRINSIC
Pfam:PBP	183	313	3e-13	PFAM

Predicted Effect

possibly damaging
Transcript: ENSMUST00000106440
AA Change: T110K

PolyPhen 2 Score 0.908 (Sensitivity: 0.81; Specificity: 0.94)

SMART Domains

Protein: ENSMUSP00000102048
Gene: ENSMUSG00000054517
AA Change: T110K

Domain	Start	End	E-Value	Type
RING	13	51	2.47e-9	SMART
low complexity region	69	85	N/A	INTRINSIC
Blast:BBOX	94	132	2e-10	BLAST
coiled coil region	140	175	N/A	INTRINSIC
low complexity region	282	298	N/A	INTRINSIC
PRY	333	383	3.67e-3	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000124722

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000133039

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000133159

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000142550

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000154061

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000145655

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.3%
20x: 95.1%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 59 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
A2m	T	C	6: 121,619,023 (GRCm39)	V256A	probably benign	Het
Acbd6	A	G	1: 155,434,454 (GRCm39)	D24G	probably damaging	Het
Adcy2	A	T	13: 68,816,611 (GRCm39)	Y792N	probably damaging	Het
Alpk1	T	C	3: 127,474,569 (GRCm39)	K478R	probably benign	Het
Atad2b	T	G	12: 5,056,745 (GRCm39)	F867C	probably damaging	Het
Bach1	A	G	16: 87,517,001 (GRCm39)	D514G	probably damaging	Het
BC035947	A	T	1: 78,474,599 (GRCm39)	D644E	probably damaging	Het
Chrm4	A	G	2: 91,758,875 (GRCm39)	S428G	probably benign	Het
Clca3a1	G	T	3: 144,714,829 (GRCm39)	P596Q	possibly damaging	Het
Cldn34b3	A	T	X: 75,310,830 (GRCm39)	I133F	probably damaging	Het
Col1a2	G	A	6: 4,518,822 (GRCm39)		probably benign	Het
Crh	A	T	3: 19,748,096 (GRCm39)	M182K	probably damaging	Het
Csta1	C	T	16: 35,945,445 (GRCm39)	V23I	probably damaging	Het
Cts6	T	A	13: 61,343,247 (GRCm39)	I325F	probably damaging	Het
Dnah6	T	C	6: 73,077,068 (GRCm39)	D2347G	probably damaging	Het
Dync1i2	C	T	2: 71,079,764 (GRCm39)	Q419*	probably null	Het
E2f4	T	A	8: 106,025,283 (GRCm39)	V121E	probably damaging	Het
Fhip1a	A	T	3: 85,568,408 (GRCm39)	L1037Q	probably damaging	Het
Fndc11	A	G	2: 180,864,067 (GRCm39)	S291G	possibly damaging	Het
Hid1	A	G	11: 115,241,945 (GRCm39)	I555T	probably damaging	Het
Hyou1	C	T	9: 44,300,388 (GRCm39)	T855M	probably benign	Het
Igf1r	T	A	7: 67,861,828 (GRCm39)	N1129K	probably damaging	Het
Iglon5	T	C	7: 43,130,062 (GRCm39)	E34G	probably damaging	Het
Itprid1	A	T	6: 55,874,797 (GRCm39)	H249L	possibly damaging	Het
Kcnab1	T	A	3: 65,226,888 (GRCm39)	V189D	probably damaging	Het
Lmo2	T	C	2: 103,811,407 (GRCm39)	Y147H	probably damaging	Het
Lrrc49	A	T	9: 60,505,440 (GRCm39)	F538L	possibly damaging	Het
Ly6h	A	G	15: 75,437,038 (GRCm39)	S113P	probably benign	Het
Mto1	A	C	9: 78,364,846 (GRCm39)	T362P	possibly damaging	Het
Myot	A	G	18: 44,487,339 (GRCm39)	D392G	probably damaging	Het
Or10a3	A	G	7: 108,480,172 (GRCm39)	F214L	probably benign	Het
Or6z5	T	C	7: 6,477,441 (GRCm39)	S111P	possibly damaging	Het
Osbpl6	T	C	2: 76,417,113 (GRCm39)	F577L	probably damaging	Het
Otc	A	G	X: 10,169,606 (GRCm39)	Q216R	probably benign	Het
Pds5a	A	T	5: 65,811,441 (GRCm39)	F331I	probably damaging	Het
Pld3	G	A	7: 27,240,532 (GRCm39)	T136M	probably benign	Het
Prph2	A	T	17: 47,222,092 (GRCm39)	D157V	probably damaging	Het
Racgap1	A	G	15: 99,524,417 (GRCm39)	S357P	probably benign	Het
Ralgapa1	A	T	12: 55,763,856 (GRCm39)	H1403Q	probably benign	Het
Rnf216	G	A	5: 143,076,681 (GRCm39)	H68Y	probably benign	Het
Scgb1b27	T	C	7: 33,721,249 (GRCm39)	Y46H	probably damaging	Het
Sel1l2	T	C	2: 140,086,085 (GRCm39)	Y502C	probably damaging	Het
Sis	A	T	3: 72,820,527 (GRCm39)	F1412L	probably benign	Het
Slc4a11	T	C	2: 130,527,544 (GRCm39)	E617G	probably benign	Het
Smap1	T	C	1: 23,898,139 (GRCm39)	N99S	probably benign	Het
Smg7	A	T	1: 152,744,064 (GRCm39)	Y40N	probably damaging	Het
Sox4	C	T	13: 29,136,613 (GRCm39)	R131Q	probably damaging	Het
Spaca6	T	C	17: 18,058,507 (GRCm39)		probably null	Het
Tbx18	G	T	9: 87,606,403 (GRCm39)	S247R	probably damaging	Het
Tenm3	T	C	8: 48,729,204 (GRCm39)	I1601V	probably benign	Het
Thap4	G	T	1: 93,652,934 (GRCm39)	Q441K	probably benign	Het
Tmprss11c	G	T	5: 86,429,945 (GRCm39)	T40K	probably benign	Het
Tpr	T	A	1: 150,317,843 (GRCm39)	F2117Y	probably benign	Het
Traf5	T	C	1: 191,738,806 (GRCm39)	M125V	probably damaging	Het
Ubp1	T	G	9: 113,793,712 (GRCm39)	S340R	probably damaging	Het
Vit	T	C	17: 78,912,867 (GRCm39)	S267P	probably benign	Het
Vmn2r124	A	T	17: 18,269,927 (GRCm39)	H61L	possibly damaging	Het
Zfp990	T	A	4: 145,264,461 (GRCm39)	H486Q	probably damaging	Het
Zkscan6	T	C	11: 65,719,098 (GRCm39)	S373P	probably benign	Het

Other mutations in Trim65

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01420:Trim65	APN	11	116,017,335 (GRCm39)	missense	probably damaging	1.00
PIT4531001:Trim65	UTSW	11	116,018,535 (GRCm39)	missense	possibly damaging	0.85
R0105:Trim65	UTSW	11	116,016,892 (GRCm39)	makesense	probably null
R0126:Trim65	UTSW	11	116,015,430 (GRCm39)	splice site	probably benign
R0268:Trim65	UTSW	11	116,017,470 (GRCm39)	splice site	probably benign
R0647:Trim65	UTSW	11	116,019,036 (GRCm39)	missense	possibly damaging	0.92
R2234:Trim65	UTSW	11	116,021,503 (GRCm39)	missense	possibly damaging	0.91
R4011:Trim65	UTSW	11	116,018,529 (GRCm39)	missense	probably benign	0.00
R4086:Trim65	UTSW	11	116,017,305 (GRCm39)	nonsense	probably null
R4088:Trim65	UTSW	11	116,017,305 (GRCm39)	nonsense	probably null
R4089:Trim65	UTSW	11	116,017,305 (GRCm39)	nonsense	probably null
R4434:Trim65	UTSW	11	116,018,435 (GRCm39)	nonsense	probably null
R5407:Trim65	UTSW	11	116,016,906 (GRCm39)	missense	probably benign
R5947:Trim65	UTSW	11	116,019,108 (GRCm39)	missense	probably damaging	0.99
R6299:Trim65	UTSW	11	116,017,377 (GRCm39)	missense	probably benign	0.00
R7248:Trim65	UTSW	11	116,018,534 (GRCm39)	missense	probably benign	0.01
R7336:Trim65	UTSW	11	116,019,116 (GRCm39)	missense	probably benign	0.00
R7496:Trim65	UTSW	11	116,017,142 (GRCm39)	missense	probably damaging	1.00
R7835:Trim65	UTSW	11	116,021,755 (GRCm39)	missense	probably damaging	1.00
R7849:Trim65	UTSW	11	116,017,082 (GRCm39)	missense	probably damaging	0.99
R8143:Trim65	UTSW	11	116,017,287 (GRCm39)	missense	probably benign	0.09
R8195:Trim65	UTSW	11	116,017,037 (GRCm39)	missense	probably benign	0.04
R8783:Trim65	UTSW	11	116,017,143 (GRCm39)	missense	probably damaging	1.00
R9158:Trim65	UTSW	11	116,018,050 (GRCm39)	missense	probably benign	0.01
R9740:Trim65	UTSW	11	116,021,434 (GRCm39)	missense	probably benign	0.26
R9751:Trim65	UTSW	11	116,021,564 (GRCm39)	missense	probably benign	0.01
X0061:Trim65	UTSW	11	116,017,397 (GRCm39)	missense	probably benign	0.39
X0066:Trim65	UTSW	11	116,021,672 (GRCm39)	missense	probably benign	0.25

Predicted Primers

PCR Primer
(F):5'- TGCCCTCTGGGTTCATATGG -3'
(R):5'- CAGGATTCATGGCGTTCCTG -3'

Sequencing Primer
(F):5'- TGGCCACAAGCAGTTTC -3'
(R):5'- ATTCATGGCGTTCCTGCGAAAAG -3'

Posted On

2014-10-15