Incidental Mutation 'R2254:Gdi2'
| ID |
241893 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Gdi2
|
| Ensembl Gene |
ENSMUSG00000021218 |
| Gene Name |
GDP dissociation inhibitor 2 |
| Synonyms |
GDI beta, GDIB, Gdi3, GDI-B |
| MMRRC Submission |
040254-MU
|
| Accession Numbers |
|
| Essential gene? |
Essential
(E-score: 1.000)
|
| Stock # |
R2254 (G1)
|
| Quality Score |
225 |
|
Status
|
Not validated
|
| Chromosome |
13 |
| Chromosomal Location |
3588075-3616261 bp(+) (GRCm39) |
| Type of Mutation |
splice site |
| DNA Base Change (assembly) |
T to A
at 3604400 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000152454
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000059515]
[ENSMUST00000059515]
[ENSMUST00000059515]
[ENSMUST00000059515]
[ENSMUST00000222365]
[ENSMUST00000223396]
[ENSMUST00000223396]
|
| AlphaFold |
Q61598 |
| Predicted Effect |
probably null
Transcript: ENSMUST00000059515
|
| SMART Domains |
Protein: ENSMUSP00000062996
Gene: ENSMUSG00000021218
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:GDI
|
1 |
436 |
4.6e-239 |
PFAM |
|
| Predicted Effect |
probably null
Transcript: ENSMUST00000059515
|
| SMART Domains |
Protein: ENSMUSP00000062996
Gene: ENSMUSG00000021218
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:GDI
|
1 |
436 |
4.6e-239 |
PFAM |
|
| Predicted Effect |
probably null
Transcript: ENSMUST00000059515
|
| SMART Domains |
Protein: ENSMUSP00000062996
Gene: ENSMUSG00000021218
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:GDI
|
1 |
436 |
4.6e-239 |
PFAM |
|
| Predicted Effect |
probably null
Transcript: ENSMUST00000059515
|
| SMART Domains |
Protein: ENSMUSP00000062996
Gene: ENSMUSG00000021218
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:GDI
|
1 |
436 |
4.6e-239 |
PFAM |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000221348
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000221575
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000221875
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000222365
|
| Predicted Effect |
probably null
Transcript: ENSMUST00000223396
|
| Predicted Effect |
probably null
Transcript: ENSMUST00000223396
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000223501
|
| Coding Region Coverage |
- 1x: 99.1%
- 3x: 98.5%
- 10x: 97.1%
- 20x: 94.7%
|
| Validation Efficiency |
|
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] GDP dissociation inhibitors are proteins that regulate the GDP-GTP exchange reaction of members of the rab family, small GTP-binding proteins of the ras superfamily, that are involved in vesicular trafficking of molecules between cellular organelles. GDIs slow the rate of dissociation of GDP from rab proteins and release GDP from membrane-bound rabs. GDI2 is ubiquitously expressed. The GDI2 gene contains many repetitive elements indicating that it may be prone to inversion/deletion rearrangements. Alternative splicing results in multiple transcript variants encoding distinct isoforms. [provided by RefSeq, Jul 2008]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 52 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Actn2 |
T |
C |
13: 12,311,365 (GRCm39) |
E260G |
probably benign |
Het |
| AI429214 |
G |
T |
8: 37,460,920 (GRCm39) |
D23Y |
possibly damaging |
Het |
| Alms1 |
A |
G |
6: 85,596,830 (GRCm39) |
Y1021C |
probably damaging |
Het |
| Ang5 |
A |
G |
14: 44,200,074 (GRCm39) |
D46G |
probably benign |
Het |
| Ano9 |
T |
A |
7: 140,683,003 (GRCm39) |
D635V |
probably benign |
Het |
| Apob |
C |
T |
12: 8,061,256 (GRCm39) |
T3246I |
possibly damaging |
Het |
| Arhgef25 |
T |
C |
10: 127,025,390 (GRCm39) |
E63G |
probably benign |
Het |
| B3gnt4 |
A |
C |
5: 123,649,342 (GRCm39) |
I236L |
probably damaging |
Het |
| Bmper |
T |
A |
9: 23,292,759 (GRCm39) |
I356N |
possibly damaging |
Het |
| Capn3 |
A |
G |
2: 120,331,732 (GRCm39) |
E614G |
probably benign |
Het |
| Ccdc90b |
T |
A |
7: 92,221,776 (GRCm39) |
H118Q |
probably damaging |
Het |
| Cdcp3 |
G |
T |
7: 130,824,634 (GRCm39) |
C243F |
probably damaging |
Het |
| Cdh2 |
A |
T |
18: 16,776,985 (GRCm39) |
|
probably null |
Het |
| Chmp7 |
C |
T |
14: 69,958,405 (GRCm39) |
V255I |
probably damaging |
Het |
| Dnhd1 |
T |
A |
7: 105,352,979 (GRCm39) |
S2711T |
probably damaging |
Het |
| Gabrg1 |
T |
A |
5: 70,939,707 (GRCm39) |
K137* |
probably null |
Het |
| Glyr1 |
A |
G |
16: 4,836,877 (GRCm39) |
V429A |
probably benign |
Het |
| Gm5938 |
T |
A |
X: 77,172,161 (GRCm39) |
|
probably null |
Het |
| Golt1b |
T |
C |
6: 142,341,979 (GRCm39) |
L121P |
probably damaging |
Het |
| Gpi1 |
T |
C |
7: 33,902,302 (GRCm39) |
N471S |
probably damaging |
Het |
| Ifi204 |
G |
A |
1: 173,589,296 (GRCm39) |
T45M |
possibly damaging |
Het |
| Il18r1 |
A |
G |
1: 40,530,380 (GRCm39) |
N369S |
possibly damaging |
Het |
| Kcnh1 |
G |
T |
1: 192,187,722 (GRCm39) |
|
probably null |
Het |
| Kitl |
G |
A |
10: 99,915,993 (GRCm39) |
|
probably null |
Het |
| Krt33a |
A |
T |
11: 99,905,004 (GRCm39) |
D167E |
possibly damaging |
Het |
| Lax1 |
A |
G |
1: 133,607,971 (GRCm39) |
S257P |
probably damaging |
Het |
| Lepr |
T |
C |
4: 101,672,309 (GRCm39) |
I1111T |
probably benign |
Het |
| Lrrcc1 |
G |
A |
3: 14,612,315 (GRCm39) |
R356H |
probably damaging |
Het |
| Map1a |
A |
G |
2: 121,134,272 (GRCm39) |
D1458G |
possibly damaging |
Het |
| Med11 |
T |
C |
11: 70,342,921 (GRCm39) |
|
probably null |
Het |
| Mtmr2 |
T |
C |
9: 13,707,353 (GRCm39) |
Y230H |
possibly damaging |
Het |
| Nup93 |
T |
C |
8: 94,954,485 (GRCm39) |
|
probably null |
Het |
| Or51ag1 |
A |
G |
7: 103,155,271 (GRCm39) |
V294A |
probably damaging |
Het |
| Ovch2 |
A |
G |
7: 107,389,402 (GRCm39) |
V342A |
probably benign |
Het |
| Ovgp1 |
A |
G |
3: 105,894,228 (GRCm39) |
|
probably benign |
Het |
| Oxtr |
A |
T |
6: 112,466,067 (GRCm39) |
L231Q |
probably damaging |
Het |
| Prap1 |
A |
G |
7: 139,676,075 (GRCm39) |
T30A |
probably damaging |
Het |
| Scg2 |
G |
A |
1: 79,414,217 (GRCm39) |
P169S |
probably damaging |
Het |
| Scube2 |
A |
G |
7: 109,424,666 (GRCm39) |
V549A |
possibly damaging |
Het |
| Slc22a12 |
A |
T |
19: 6,592,571 (GRCm39) |
V57D |
possibly damaging |
Het |
| Slc22a28 |
A |
C |
19: 8,041,858 (GRCm39) |
C450G |
probably benign |
Het |
| Tas2r120 |
A |
T |
6: 132,634,572 (GRCm39) |
Q218L |
probably benign |
Het |
| Tbx15 |
A |
G |
3: 99,259,190 (GRCm39) |
T354A |
possibly damaging |
Het |
| Trim24 |
A |
G |
6: 37,935,612 (GRCm39) |
T868A |
probably benign |
Het |
| Ttn |
T |
A |
2: 76,598,684 (GRCm39) |
M19410L |
possibly damaging |
Het |
| Ttn |
A |
T |
2: 76,641,587 (GRCm39) |
L5176Q |
possibly damaging |
Het |
| Upb1 |
G |
A |
10: 75,272,051 (GRCm39) |
R288H |
probably damaging |
Het |
| Wdr20rt |
T |
A |
12: 65,273,007 (GRCm39) |
W56R |
probably damaging |
Het |
| Wdr62 |
T |
G |
7: 29,967,328 (GRCm39) |
I309L |
probably damaging |
Het |
| Zer1 |
G |
A |
2: 29,998,286 (GRCm39) |
L342F |
probably damaging |
Het |
| Zfp40 |
T |
C |
17: 23,397,344 (GRCm39) |
D51G |
possibly damaging |
Het |
| Zfp64 |
G |
A |
2: 168,768,662 (GRCm39) |
H317Y |
probably damaging |
Het |
|
| Other mutations in Gdi2 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00954:Gdi2
|
APN |
13 |
3,606,467 (GRCm39) |
missense |
probably benign |
0.04 |
|
IGL01135:Gdi2
|
APN |
13 |
3,598,855 (GRCm39) |
splice site |
probably benign |
|
|
IGL01402:Gdi2
|
APN |
13 |
3,614,611 (GRCm39) |
missense |
probably benign |
0.24 |
|
IGL01404:Gdi2
|
APN |
13 |
3,614,611 (GRCm39) |
missense |
probably benign |
0.24 |
|
IGL02100:Gdi2
|
APN |
13 |
3,606,373 (GRCm39) |
missense |
probably benign |
0.03 |
|
IGL02305:Gdi2
|
APN |
13 |
3,606,428 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02545:Gdi2
|
APN |
13 |
3,607,009 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02561:Gdi2
|
APN |
13 |
3,598,954 (GRCm39) |
missense |
possibly damaging |
0.94 |
|
IGL02939:Gdi2
|
APN |
13 |
3,614,623 (GRCm39) |
missense |
probably benign |
0.21 |
|
E0354:Gdi2
|
UTSW |
13 |
3,611,939 (GRCm39) |
splice site |
probably null |
|
|
R1612:Gdi2
|
UTSW |
13 |
3,610,051 (GRCm39) |
missense |
probably benign |
0.00 |
|
R1775:Gdi2
|
UTSW |
13 |
3,610,018 (GRCm39) |
missense |
possibly damaging |
0.71 |
|
R1803:Gdi2
|
UTSW |
13 |
3,614,547 (GRCm39) |
nonsense |
probably null |
|
|
R2426:Gdi2
|
UTSW |
13 |
3,612,034 (GRCm39) |
missense |
probably benign |
0.17 |
|
R4081:Gdi2
|
UTSW |
13 |
3,598,866 (GRCm39) |
missense |
probably benign |
0.10 |
|
R6365:Gdi2
|
UTSW |
13 |
3,615,093 (GRCm39) |
missense |
possibly damaging |
0.82 |
|
R7130:Gdi2
|
UTSW |
13 |
3,598,891 (GRCm39) |
missense |
probably benign |
0.12 |
|
R7268:Gdi2
|
UTSW |
13 |
3,606,363 (GRCm39) |
nonsense |
probably null |
|
|
R7349:Gdi2
|
UTSW |
13 |
3,606,395 (GRCm39) |
missense |
probably benign |
0.16 |
|
R7590:Gdi2
|
UTSW |
13 |
3,614,611 (GRCm39) |
missense |
probably benign |
0.24 |
|
R7753:Gdi2
|
UTSW |
13 |
3,598,956 (GRCm39) |
missense |
probably benign |
0.01 |
|
R8114:Gdi2
|
UTSW |
13 |
3,598,906 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9375:Gdi2
|
UTSW |
13 |
3,614,869 (GRCm39) |
missense |
probably benign |
0.34 |
|
R9731:Gdi2
|
UTSW |
13 |
3,588,299 (GRCm39) |
start codon destroyed |
probably null |
0.06 |
|
| Predicted Primers |
PCR Primer
(F):5'- CCTACAAGTTGTAGCACTGACC -3'
(R):5'- ATGGATGTCTGTGATTCCTTTTCAC -3'
Sequencing Primer
(F):5'- CTACAAGTTGTAGCACTGACCTTCAG -3'
(R):5'- TCACCAGAAAAATCTCATCATTGTG -3'
|
| Posted On |
2014-10-16 |
Incidental Mutation