Mutagenetix > Incidental Mutation

Incidental Mutation 'R2262:Klra17'

243860

Institutional Source

Beutler Lab

Gene Symbol

Klra17

Ensembl Gene

ENSMUSG00000014543

Gene Name

killer cell lectin-like receptor, subfamily A, member 17

Synonyms

Ly49q1, Ly49Q, Ly-49Q

MMRRC Submission

040262-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.059) question?

Stock #

R2262 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

129808117-129853635 bp(-) (GRCm39)

Type of Mutation

critical splice donor site (2 bp from exon)

DNA Base Change (assembly)

A to G at 129851757 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000114108 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000014687] [ENSMUST00000122219]

AlphaFold

Q9JMA4

Predicted Effect

probably null
Transcript: ENSMUST00000014687

SMART Domains

Protein: ENSMUSP00000014687
Gene: ENSMUSG00000014543

Domain	Start	End	E-Value	Type
low complexity region	52	69	N/A	INTRINSIC
Blast:CLECT	73	126	2e-12	BLAST
CLECT	144	259	1.5e-14	SMART

Predicted Effect

probably null
Transcript: ENSMUST00000122219

SMART Domains

Protein: ENSMUSP00000114108
Gene: ENSMUSG00000014543

Domain	Start	End	E-Value	Type
low complexity region	53	70	N/A	INTRINSIC
Blast:CLECT	74	127	2e-12	BLAST
CLECT	145	260	1.5e-14	SMART

Meta Mutation Damage Score

0.9755

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.3%
20x: 94.9%

Validation Efficiency

100% (59/59)

MGI Phenotype

PHENOTYPE: Mice homozygous for a knock-in allele exhibit reduced plasmacytoid dendritic cell number and function. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 61 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Ahdc1	A	G	4: 132,790,474 (GRCm39)	T572A	unknown	Het
Bco1	T	C	8: 117,859,764 (GRCm39)	L489S	probably damaging	Het
Brinp1	A	G	4: 68,747,591 (GRCm39)	Y171H	probably damaging	Het
C1rl	A	T	6: 124,483,907 (GRCm39)	I186F	probably damaging	Het
Cacna1d	A	G	14: 30,212,973 (GRCm39)	V29A	possibly damaging	Het
Calcrl	T	C	2: 84,175,517 (GRCm39)	D279G	probably damaging	Het
Cass4	T	C	2: 172,269,174 (GRCm39)	S421P	probably damaging	Het
Casz1	G	T	4: 149,013,556 (GRCm39)	R40L	probably damaging	Het
Cdh23	A	G	10: 60,152,907 (GRCm39)	V2372A	probably damaging	Het
Cdk17	T	A	10: 93,047,820 (GRCm39)	S56T	possibly damaging	Het
Ces2h	T	A	8: 105,743,191 (GRCm39)	M142K	probably damaging	Het
Cfap161	C	T	7: 83,442,580 (GRCm39)	V78I	probably benign	Het
Chst8	T	A	7: 34,375,435 (GRCm39)	M135L	probably benign	Het
Col1a2	G	A	6: 4,518,822 (GRCm39)		probably benign	Het
Dcc	C	T	18: 71,507,622 (GRCm39)	E917K	probably damaging	Het
Dnah11	T	A	12: 117,843,760 (GRCm39)	M4362L	probably benign	Het
Dnah11	T	C	12: 117,930,374 (GRCm39)	T3324A	probably damaging	Het
Dnah8	A	G	17: 30,892,809 (GRCm39)	N798S	probably damaging	Het
Dnajc3	A	G	14: 119,198,232 (GRCm39)	Q118R	probably damaging	Het
Dok4	A	T	8: 95,593,140 (GRCm39)	C182S	probably damaging	Het
Fnbp4	G	T	2: 90,587,748 (GRCm39)	L375F	probably damaging	Het
Gbp8	T	C	5: 105,163,999 (GRCm39)	Q433R	possibly damaging	Het
Glt1d1	A	G	5: 127,734,176 (GRCm39)	M117V	probably benign	Het
Hcar1	A	C	5: 124,016,649 (GRCm39)	D347E	probably benign	Het
Kif16b	T	C	2: 142,582,837 (GRCm39)	K563E	probably damaging	Het
Krt35	C	T	11: 99,986,593 (GRCm39)	M140I	probably benign	Het
Lamb2	A	T	9: 108,357,809 (GRCm39)	I111F	probably damaging	Het
Nell1	C	T	7: 50,210,569 (GRCm39)	T494I	possibly damaging	Het
Noa1	G	A	5: 77,457,651 (GRCm39)	Q85*	probably null	Het
Nsun4	A	T	4: 115,910,147 (GRCm39)	S138T	probably benign	Het
Pcdh1	A	T	18: 38,331,710 (GRCm39)	L431H	probably benign	Het
Pde1a	T	A	2: 79,959,275 (GRCm39)		probably benign	Het
Pdgfra	T	C	5: 75,346,184 (GRCm39)	V778A	probably benign	Het
Plekhj1	A	T	10: 80,632,306 (GRCm39)	N55K	probably benign	Het
Ptpn20	A	G	14: 33,334,268 (GRCm39)	M49V	probably benign	Het
Rbm6	A	G	9: 107,668,289 (GRCm39)	L547P	probably damaging	Het
Rexo1	C	T	10: 80,385,403 (GRCm39)	E552K	probably benign	Het
Ryr3	C	G	2: 112,506,218 (GRCm39)	R3443P	probably damaging	Het
Saxo1	C	T	4: 86,397,212 (GRCm39)	D109N	probably damaging	Het
Setd2	A	G	9: 110,390,311 (GRCm39)		probably benign	Het
Slc22a28	T	C	19: 8,048,573 (GRCm39)	Y358C	probably benign	Het
Sptbn4	T	A	7: 27,133,782 (GRCm39)	D77V	probably damaging	Het
Ssh1	T	C	5: 114,080,764 (GRCm39)	S867G	possibly damaging	Het
Stmn2	T	C	3: 8,606,955 (GRCm39)	F25S	probably damaging	Het
Tcirg1	C	T	19: 3,953,591 (GRCm39)	R112H	possibly damaging	Het
Tekt4	T	A	17: 25,695,485 (GRCm39)	S439R	possibly damaging	Het
Trpc1	T	A	9: 95,588,986 (GRCm39)	N746I	probably damaging	Het
Tuba1c	A	G	15: 98,935,757 (GRCm39)	H406R	probably damaging	Het
Uqcrfs1	G	A	13: 30,725,090 (GRCm39)	S150L	probably benign	Het
Vcp	T	C	4: 42,980,828 (GRCm39)	T761A	probably benign	Het
Vmn1r68	T	C	7: 10,261,372 (GRCm39)	E242G	probably damaging	Het
Vmn2r29	T	A	7: 7,243,085 (GRCm39)	H22L	possibly damaging	Het
Vmn2r32	T	A	7: 7,477,618 (GRCm39)	I258L	probably benign	Het
Vmn2r37	T	A	7: 9,220,943 (GRCm39)	T307S	probably damaging	Het
Vmn2r6	T	C	3: 64,464,090 (GRCm39)	N248S	probably benign	Het
Vmn2r63	G	T	7: 42,578,031 (GRCm39)	T169N	probably benign	Het
Vmn2r67	T	C	7: 84,786,182 (GRCm39)	T608A	probably damaging	Het
Wdr87-ps	T	C	7: 29,231,987 (GRCm39)		noncoding transcript	Het
Xpo1	T	A	11: 23,234,634 (GRCm39)		probably null	Het
Zfp180	T	G	7: 23,804,049 (GRCm39)	V156G	probably benign	Het
Zfp37	A	T	4: 62,109,873 (GRCm39)	L397Q	probably damaging	Het

Other mutations in Klra17

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00727:Klra17	APN	6	129,808,472 (GRCm39)	missense	probably benign	0.12
IGL02084:Klra17	APN	6	129,808,556 (GRCm39)	missense	probably damaging	1.00
IGL02995:Klra17	APN	6	129,845,647 (GRCm39)	critical splice donor site	probably null
IGL03238:Klra17	APN	6	129,845,773 (GRCm39)	missense	probably benign	0.43
R0118:Klra17	UTSW	6	129,808,552 (GRCm39)	missense	probably benign	0.01
R0583:Klra17	UTSW	6	129,845,656 (GRCm39)	missense	probably damaging	1.00
R1103:Klra17	UTSW	6	129,845,806 (GRCm39)	unclassified	probably benign
R1378:Klra17	UTSW	6	129,842,647 (GRCm39)	missense	probably damaging	0.96
R1513:Klra17	UTSW	6	129,849,277 (GRCm39)	missense	possibly damaging	0.61
R1817:Klra17	UTSW	6	129,845,681 (GRCm39)	splice site	probably null
R2446:Klra17	UTSW	6	129,808,477 (GRCm39)	missense	probably benign	0.02
R2484:Klra17	UTSW	6	129,845,720 (GRCm39)	missense	probably damaging	1.00
R3410:Klra17	UTSW	6	129,851,809 (GRCm39)	missense	probably damaging	0.99
R3411:Klra17	UTSW	6	129,851,809 (GRCm39)	missense	probably damaging	0.99
R3739:Klra17	UTSW	6	129,850,328 (GRCm39)	missense	probably benign	0.03
R4747:Klra17	UTSW	6	129,849,232 (GRCm39)	missense	probably damaging	0.97
R4956:Klra17	UTSW	6	129,850,279 (GRCm39)	missense	probably damaging	1.00
R5079:Klra17	UTSW	6	129,849,159 (GRCm39)	missense	possibly damaging	0.72
R5310:Klra17	UTSW	6	129,845,671 (GRCm39)	missense	probably damaging	1.00
R5366:Klra17	UTSW	6	129,851,858 (GRCm39)	missense	possibly damaging	0.89
R5875:Klra17	UTSW	6	129,851,791 (GRCm39)	missense	probably benign	0.01
R6043:Klra17	UTSW	6	129,849,150 (GRCm39)	critical splice donor site	probably null
R6515:Klra17	UTSW	6	129,808,462 (GRCm39)	missense	probably damaging	1.00
R6675:Klra17	UTSW	6	129,849,286 (GRCm39)	missense	probably damaging	0.99
R7201:Klra17	UTSW	6	129,850,306 (GRCm39)	missense	possibly damaging	0.62
R7296:Klra17	UTSW	6	129,808,555 (GRCm39)	missense	possibly damaging	0.95
R8141:Klra17	UTSW	6	129,849,292 (GRCm39)	missense	probably damaging	1.00
R8260:Klra17	UTSW	6	129,808,421 (GRCm39)	missense	probably damaging	0.99
R8399:Klra17	UTSW	6	129,851,900 (GRCm39)	splice site	probably benign
R8503:Klra17	UTSW	6	129,845,777 (GRCm39)	missense	probably benign	0.02
R8694:Klra17	UTSW	6	129,851,780 (GRCm39)	missense	probably benign	0.00
R8861:Klra17	UTSW	6	129,851,865 (GRCm39)	missense	probably damaging	0.99
R9188:Klra17	UTSW	6	129,808,523 (GRCm39)	missense	probably damaging	1.00
R9211:Klra17	UTSW	6	129,842,651 (GRCm39)	missense	possibly damaging	0.91

Predicted Primers

PCR Primer
(F):5'- GCTTCCTTTCTAACTAGCTAACAAC -3'
(R):5'- TAGGAAGACCCCACCCTTTC -3'

Sequencing Primer
(F):5'- CCTTTCTAACTAGCTAACAACAGTAG -3'
(R):5'- TCAGGTACCTACTTAAAAGTGAACAC -3'

Posted On

2014-10-16