Mutagenetix > Incidental Mutations

Incidental Mutation 'R2262:Cdk17'

243886

Institutional Source

Beutler Lab

Gene Symbol

Cdk17

Ensembl Gene

ENSMUSG00000020015

Gene Name

cyclin-dependent kinase 17

Synonyms

Pctk2, 6430598J10Rik

MMRRC Submission

040262-MU

Accession Numbers

Is this an essential gene?

Possibly non essential (E-score: 0.282) question?

Stock #

R2262 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

93160875-93267071 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 93211958 bp

Zygosity

Heterozygous

Amino Acid Change

Serine to Threonine at position 56 (S56T)

Ref Sequence

ENSEMBL: ENSMUSP00000149297 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000069965] [ENSMUST00000213378] [ENSMUST00000214445] [ENSMUST00000215286]

Predicted Effect

probably benign
Transcript: ENSMUST00000069965
AA Change: S56T

PolyPhen 2 Score 0.425 (Sensitivity: 0.89; Specificity: 0.90)

SMART Domains

Protein: ENSMUSP00000070355
Gene: ENSMUSG00000020015
AA Change: S56T

Domain	Start	End	E-Value	Type
S_TKc	192	473	4.67e-97	SMART

Predicted Effect

possibly damaging
Transcript: ENSMUST00000213378
AA Change: S56T

PolyPhen 2 Score 0.904 (Sensitivity: 0.82; Specificity: 0.94)

Predicted Effect

probably benign
Transcript: ENSMUST00000214445

Predicted Effect

possibly damaging
Transcript: ENSMUST00000215286
AA Change: S23T

PolyPhen 2 Score 0.810 (Sensitivity: 0.84; Specificity: 0.93)

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000215495

Meta Mutation Damage Score

0.0600

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.3%
20x: 94.9%

Validation Efficiency

100% (59/59)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene belongs to the cdc2/cdkx subfamily of the ser/thr family of protein kinases. It has similarity to a rat protein that is thought to play a role in terminally differentiated neurons. Alternatively spliced transcript variants encoding different isoforms have been found. [provided by RefSeq, Jul 2010]

Allele List at MGI

Other mutations in this stock

Total: 61 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4932431P20Rik	T	C	7: 29,532,562		noncoding transcript	Het
Ahdc1	A	G	4: 133,063,163	T572A	unknown	Het
Bco1	T	C	8: 117,133,025	L489S	probably damaging	Het
Brinp1	A	G	4: 68,829,354	Y171H	probably damaging	Het
C1rl	A	T	6: 124,506,948	I186F	probably damaging	Het
Cacna1d	A	G	14: 30,491,016	V29A	possibly damaging	Het
Calcrl	T	C	2: 84,345,173	D279G	probably damaging	Het
Cass4	T	C	2: 172,427,254	S421P	probably damaging	Het
Casz1	G	T	4: 148,929,099	R40L	probably damaging	Het
Cdh23	A	G	10: 60,317,128	V2372A	probably damaging	Het
Ces2h	T	A	8: 105,016,559	M142K	probably damaging	Het
Cfap161	C	T	7: 83,793,372	V78I	probably benign	Het
Chst8	T	A	7: 34,676,010	M135L	probably benign	Het
Col1a2	G	A	6: 4,518,822		probably benign	Het
Dcc	C	T	18: 71,374,551	E917K	probably damaging	Het
Dnah11	T	A	12: 117,880,025	M4362L	probably benign	Het
Dnah11	T	C	12: 117,966,639	T3324A	probably damaging	Het
Dnah8	A	G	17: 30,673,835	N798S	probably damaging	Het
Dnajc3	A	G	14: 118,960,820	Q118R	probably damaging	Het
Dok4	A	T	8: 94,866,512	C182S	probably damaging	Het
Fnbp4	G	T	2: 90,757,404	L375F	probably damaging	Het
Gbp8	T	C	5: 105,016,133	Q433R	possibly damaging	Het
Glt1d1	A	G	5: 127,657,112	M117V	probably benign	Het
Hcar1	A	C	5: 123,878,586	D347E	probably benign	Het
Kif16b	T	C	2: 142,740,917	K563E	probably damaging	Het
Klra17	A	G	6: 129,874,794		probably null	Het
Krt35	C	T	11: 100,095,767	M140I	probably benign	Het
Lamb2	A	T	9: 108,480,610	I111F	probably damaging	Het
Nell1	C	T	7: 50,560,821	T494I	possibly damaging	Het
Noa1	G	A	5: 77,309,804	Q85*	probably null	Het
Nsun4	A	T	4: 116,052,950	S138T	probably benign	Het
Pcdh1	A	T	18: 38,198,657	L431H	probably benign	Het
Pde1a	T	A	2: 80,128,931		probably benign	Het
Pdgfra	T	C	5: 75,185,523	V778A	probably benign	Het
Plekhj1	A	T	10: 80,796,472	N55K	probably benign	Het
Ptpn20	A	G	14: 33,612,311	M49V	probably benign	Het
Rbm6	A	G	9: 107,791,090	L547P	probably damaging	Het
Rexo1	C	T	10: 80,549,569	E552K	probably benign	Het
Ryr3	C	G	2: 112,675,873	R3443P	probably damaging	Het
Saxo1	C	T	4: 86,478,975	D109N	probably damaging	Het
Setd2	A	G	9: 110,561,243		probably benign	Het
Slc22a28	T	C	19: 8,071,208	Y358C	probably benign	Het
Sptbn4	T	A	7: 27,434,357	D77V	probably damaging	Het
Ssh1	T	C	5: 113,942,703	S867G	possibly damaging	Het
Stmn2	T	C	3: 8,541,895	F25S	probably damaging	Het
Tcirg1	C	T	19: 3,903,591	R112H	possibly damaging	Het
Tekt4	T	A	17: 25,476,511	S439R	possibly damaging	Het
Trpc1	T	A	9: 95,706,933	N746I	probably damaging	Het
Tuba1c	A	G	15: 99,037,876	H406R	probably damaging	Het
Uqcrfs1	G	A	13: 30,541,107	S150L	probably benign	Het
Vcp	T	C	4: 42,980,828	T761A	probably benign	Het
Vmn1r68	T	C	7: 10,527,445	E242G	probably damaging	Het
Vmn2r29	T	A	7: 7,240,086	H22L	possibly damaging	Het
Vmn2r32	T	A	7: 7,474,619	I258L	probably benign	Het
Vmn2r37	T	A	7: 9,217,944	T307S	probably damaging	Het
Vmn2r6	T	C	3: 64,556,669	N248S	probably benign	Het
Vmn2r63	G	T	7: 42,928,607	T169N	probably benign	Het
Vmn2r67	T	C	7: 85,136,974	T608A	probably damaging	Het
Xpo1	T	A	11: 23,284,634		probably null	Het
Zfp180	T	G	7: 24,104,624	V156G	probably benign	Het
Zfp37	A	T	4: 62,191,636	L397Q	probably damaging	Het

Other mutations in Cdk17

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00087:Cdk17	APN	10	93226771	missense	probably damaging	1.00
IGL00781:Cdk17	APN	10	93232416	missense	probably damaging	1.00
IGL01622:Cdk17	APN	10	93238962	unclassified	probably benign
IGL01623:Cdk17	APN	10	93238962	unclassified	probably benign
IGL01732:Cdk17	APN	10	93218045	missense	probably benign	0.01
IGL01768:Cdk17	APN	10	93208261	missense	probably damaging	0.99
IGL02942:Cdk17	APN	10	93238968	missense	probably benign
IGL03308:Cdk17	APN	10	93221644	critical splice donor site	probably null
R0039:Cdk17	UTSW	10	93226778	splice site	probably benign
R0398:Cdk17	UTSW	10	93237840	missense	probably benign	0.01
R0432:Cdk17	UTSW	10	93237790	unclassified	probably benign
R0609:Cdk17	UTSW	10	93216472	missense	probably benign
R0781:Cdk17	UTSW	10	93239033	nonsense	probably null
R1110:Cdk17	UTSW	10	93239033	nonsense	probably null
R1604:Cdk17	UTSW	10	93232498	missense	probably damaging	1.00
R1674:Cdk17	UTSW	10	93221630	missense	probably benign	0.21
R1758:Cdk17	UTSW	10	93208250	missense	probably damaging	1.00
R1797:Cdk17	UTSW	10	93208252	missense	possibly damaging	0.76
R1864:Cdk17	UTSW	10	93226105	missense	probably damaging	1.00
R1924:Cdk17	UTSW	10	93226117	missense	probably damaging	1.00
R1929:Cdk17	UTSW	10	93228678	missense	probably damaging	1.00
R2143:Cdk17	UTSW	10	93218019	missense	probably damaging	1.00
R2207:Cdk17	UTSW	10	93228762	missense	probably damaging	1.00
R2261:Cdk17	UTSW	10	93211958	missense	possibly damaging	0.90
R3737:Cdk17	UTSW	10	93221644	critical splice donor site	probably null
R3883:Cdk17	UTSW	10	93212077	critical splice donor site	probably null
R4436:Cdk17	UTSW	10	93211896	splice site	probably null
R5372:Cdk17	UTSW	10	93226039	missense	probably benign	0.03
R5444:Cdk17	UTSW	10	93217961	splice site	probably null
R5488:Cdk17	UTSW	10	93232412	missense	probably damaging	1.00
R5489:Cdk17	UTSW	10	93232412	missense	probably damaging	1.00
R5815:Cdk17	UTSW	10	93228697	missense	probably damaging	1.00
R6164:Cdk17	UTSW	10	93235469	missense	probably benign	0.26
R6209:Cdk17	UTSW	10	93208231	missense	probably benign	0.05
R6384:Cdk17	UTSW	10	93211965	missense	probably damaging	0.99
R6627:Cdk17	UTSW	10	93232412	missense	probably damaging	1.00
R6698:Cdk17	UTSW	10	93228678	missense	probably damaging	1.00
R7164:Cdk17	UTSW	10	93232481	missense	probably benign	0.07
R8096:Cdk17	UTSW	10	93216367	missense	probably damaging	0.98
R8118:Cdk17	UTSW	10	93216390	missense	possibly damaging	0.46

Predicted Primers

PCR Primer
(F):5'- TGCACTTTGAATGAAATCGCC -3'
(R):5'- GGCTGGCTTTGTTCATACAATGAC -3'

Sequencing Primer
(F):5'- TCGCCAAAGAAGTGAGCTTAC -3'
(R):5'- TGACACTCAGTGCACATGTCCTAG -3'

Posted On

2014-10-16