Mutagenetix > Incidental Mutation

Incidental Mutation 'R0278:Vmn2r56'

24464

Institutional Source

Beutler Lab

Gene Symbol

Vmn2r56

Ensembl Gene

ENSMUSG00000090762

Gene Name

vomeronasal 2, receptor 56

Synonyms

EG629079

MMRRC Submission

038500-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.066) question?

Stock #

R0278 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

12427787-12468785 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 12449644 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Valine to Aspartic acid at position 198 (V198D)

Ref Sequence

ENSEMBL: ENSMUSP00000129566 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000163852]

AlphaFold

A0A3B2WBA1

Predicted Effect

probably damaging
Transcript: ENSMUST00000163852
AA Change: V198D

PolyPhen 2 Score 0.993 (Sensitivity: 0.70; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000129566
Gene: ENSMUSG00000090762
AA Change: V198D

Domain	Start	End	E-Value	Type
Pfam:ANF_receptor	5	397	1.9e-55	PFAM
Pfam:NCD3G	439	492	6.4e-20	PFAM
Pfam:7tm_3	523	760	1.3e-53	PFAM

Coding Region Coverage

1x: 98.8%
3x: 97.8%
10x: 95.4%
20x: 90.7%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 63 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca13	T	A	11: 9,328,215 (GRCm39)	S3429R	probably damaging	Het
Abca3	A	G	17: 24,600,894 (GRCm39)	D436G	probably benign	Het
Acacb	C	A	5: 114,371,320 (GRCm39)	Y1816*	probably null	Het
Acer3	T	C	7: 97,910,804 (GRCm39)	Y86C	probably damaging	Het
Adgre1	A	G	17: 57,754,872 (GRCm39)	I657V	probably benign	Het
Akap1	A	G	11: 88,736,020 (GRCm39)	V214A	probably benign	Het
Ankrd42	T	C	7: 92,280,865 (GRCm39)	R22G	possibly damaging	Het
Apc2	C	T	10: 80,148,647 (GRCm39)	P1234S	possibly damaging	Het
Atp13a4	A	G	16: 29,273,652 (GRCm39)	I441T	probably damaging	Het
Cenpu	G	A	8: 47,031,344 (GRCm39)	A242T	probably damaging	Het
Col6a6	A	T	9: 105,644,487 (GRCm39)	V1267E	possibly damaging	Het
Crhr2	T	C	6: 55,094,516 (GRCm39)	T58A	probably benign	Het
Ddx6	T	G	9: 44,542,722 (GRCm39)	C385G	probably damaging	Het
Dnah7a	A	T	1: 53,543,305 (GRCm39)	N2288K	probably benign	Het
Egfl8	A	T	17: 34,833,342 (GRCm39)		probably null	Het
Elmo2	A	T	2: 165,139,287 (GRCm39)	I420N	probably damaging	Het
Elovl4	A	G	9: 83,665,248 (GRCm39)	F113L	probably benign	Het
Fancd2	T	A	6: 113,525,409 (GRCm39)		probably null	Het
Fbxl13	A	G	5: 21,728,908 (GRCm39)	V456A	probably benign	Het
Fgfr2	A	T	7: 129,863,592 (GRCm39)		probably null	Het
Fkbpl	A	T	17: 34,864,384 (GRCm39)	R51*	probably null	Het
Fn3krp	G	A	11: 121,312,406 (GRCm39)	V40M	probably damaging	Het
Fnip1	A	G	11: 54,380,169 (GRCm39)		probably null	Het
Gm15446	A	T	5: 110,091,281 (GRCm39)	Q511L	probably benign	Het
Gm7334	A	G	17: 51,006,289 (GRCm39)	K192E	probably damaging	Het
H2-Q10	A	T	17: 35,784,204 (GRCm39)	T282S	possibly damaging	Het
Hspa9	A	G	18: 35,073,963 (GRCm39)	V482A	possibly damaging	Het
Ica1l	A	T	1: 60,053,155 (GRCm39)	S128T	probably benign	Het
Il7r	A	T	15: 9,516,423 (GRCm39)	I126K	probably damaging	Het
Kcnj8	T	C	6: 142,516,074 (GRCm39)	E11G	probably benign	Het
Klkb1	A	C	8: 45,725,446 (GRCm39)	F498V	probably benign	Het
Lama1	A	G	17: 68,117,178 (GRCm39)	E2491G	probably null	Het
Lhfpl2	T	C	13: 94,310,943 (GRCm39)	V71A	probably benign	Het
Lin9	T	C	1: 180,493,488 (GRCm39)	I198T	probably damaging	Het
Lrrc7	T	A	3: 157,885,432 (GRCm39)	M431L	possibly damaging	Het
Nmt2	A	G	2: 3,326,424 (GRCm39)	T519A	probably benign	Het
Or10w1	C	A	19: 13,632,128 (GRCm39)	L112I	probably damaging	Het
Or10w1	T	A	19: 13,632,129 (GRCm39)	L112H	probably damaging	Het
Or1d2	T	C	11: 74,256,028 (GRCm39)	F178L	probably damaging	Het
Or4a74	G	T	2: 89,440,108 (GRCm39)	L113M	probably damaging	Het
Or4a74	A	T	2: 89,440,107 (GRCm39)	L113Q	probably damaging	Het
Or5al7	A	T	2: 85,992,923 (GRCm39)	Y123*	probably null	Het
Or7h8	G	T	9: 20,124,182 (GRCm39)	C179F	probably damaging	Het
Parp4	A	G	14: 56,844,980 (GRCm39)	R624G	probably damaging	Het
Pex16	C	T	2: 92,211,401 (GRCm39)	P325S	probably damaging	Het
Pik3ca	T	C	3: 32,493,902 (GRCm39)	M288T	possibly damaging	Het
Pla2g5	C	T	4: 138,527,967 (GRCm39)	D100N	probably benign	Het
Prss43	T	A	9: 110,656,430 (GRCm39)	M39K	probably benign	Het
Psd4	T	C	2: 24,284,450 (GRCm39)	S105P	probably damaging	Het
Ptprz1	T	A	6: 23,000,816 (GRCm39)	S969T	probably benign	Het
Rad23b	T	A	4: 55,383,575 (GRCm39)		probably null	Het
Rif1	GCCACCA	GCCA	2: 52,000,336 (GRCm39)		probably benign	Het
Rpl10l	A	G	12: 66,331,130 (GRCm39)	M1T	probably null	Het
Sec16a	A	G	2: 26,318,328 (GRCm39)	S1588P	probably damaging	Het
Sh3rf1	A	T	8: 61,827,052 (GRCm39)	H602L	probably damaging	Het
Sparcl1	A	T	5: 104,236,263 (GRCm39)	S497T	probably benign	Het
Spata13	A	G	14: 60,929,537 (GRCm39)	Y365C	probably benign	Het
Trim5	T	C	7: 103,928,882 (GRCm39)	N20D	probably benign	Het
Vmn1r201	G	T	13: 22,659,194 (GRCm39)	W136L	probably damaging	Het
Vmn2r112	A	G	17: 22,821,987 (GRCm39)	I222V	probably benign	Het
Wapl	A	G	14: 34,414,569 (GRCm39)	D477G	possibly damaging	Het
Zfp202	C	A	9: 40,119,778 (GRCm39)	H194N	probably benign	Het
Zfp212	C	T	6: 47,903,453 (GRCm39)	R13W	probably damaging	Het

Other mutations in Vmn2r56

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00902:Vmn2r56	APN	7	12,449,426 (GRCm39)	missense	probably benign	0.38
IGL01060:Vmn2r56	APN	7	12,447,016 (GRCm39)	missense	probably damaging	0.97
IGL01433:Vmn2r56	APN	7	12,449,541 (GRCm39)	missense	probably benign
IGL01859:Vmn2r56	APN	7	12,449,932 (GRCm39)	missense	probably damaging	1.00
IGL01874:Vmn2r56	APN	7	12,449,602 (GRCm39)	missense	probably benign	0.03
IGL02208:Vmn2r56	APN	7	12,449,408 (GRCm39)	missense	probably benign	0.01
PIT4445001:Vmn2r56	UTSW	7	12,449,153 (GRCm39)	critical splice donor site	probably null
R0077:Vmn2r56	UTSW	7	12,449,332 (GRCm39)	missense	probably benign	0.01
R0512:Vmn2r56	UTSW	7	12,449,350 (GRCm39)	missense	probably benign
R0658:Vmn2r56	UTSW	7	12,444,235 (GRCm39)	missense	probably benign	0.10
R0789:Vmn2r56	UTSW	7	12,466,762 (GRCm39)	missense	probably damaging	1.00
R1534:Vmn2r56	UTSW	7	12,427,954 (GRCm39)	missense	probably benign
R1731:Vmn2r56	UTSW	7	12,466,972 (GRCm39)	missense	probably benign
R1817:Vmn2r56	UTSW	7	12,449,542 (GRCm39)	missense	probably benign
R2047:Vmn2r56	UTSW	7	12,466,918 (GRCm39)	missense	probably damaging	1.00
R2139:Vmn2r56	UTSW	7	12,446,890 (GRCm39)	nonsense	probably null
R2160:Vmn2r56	UTSW	7	12,428,146 (GRCm39)	missense	probably benign	0.43
R2449:Vmn2r56	UTSW	7	12,428,082 (GRCm39)	missense	possibly damaging	0.67
R2877:Vmn2r56	UTSW	7	12,444,954 (GRCm39)	missense	probably benign
R2878:Vmn2r56	UTSW	7	12,444,954 (GRCm39)	missense	probably benign
R4910:Vmn2r56	UTSW	7	12,449,462 (GRCm39)	missense	possibly damaging	0.64
R5072:Vmn2r56	UTSW	7	12,427,983 (GRCm39)	missense	probably benign	0.40
R5340:Vmn2r56	UTSW	7	12,449,799 (GRCm39)	missense	probably damaging	1.00
R5697:Vmn2r56	UTSW	7	12,449,917 (GRCm39)	missense	probably damaging	1.00
R5798:Vmn2r56	UTSW	7	12,446,892 (GRCm39)	missense	probably benign	0.00
R6166:Vmn2r56	UTSW	7	12,427,947 (GRCm39)	missense	probably damaging	1.00
R6290:Vmn2r56	UTSW	7	12,428,809 (GRCm39)	missense	probably damaging	1.00
R6458:Vmn2r56	UTSW	7	12,427,984 (GRCm39)	missense	probably damaging	0.99
R6751:Vmn2r56	UTSW	7	12,428,719 (GRCm39)	missense	probably benign
R6978:Vmn2r56	UTSW	7	12,449,333 (GRCm39)	missense	probably benign	0.01
R7090:Vmn2r56	UTSW	7	12,449,254 (GRCm39)	missense	probably damaging	1.00
R7200:Vmn2r56	UTSW	7	12,444,259 (GRCm39)	missense	probably damaging	1.00
R7861:Vmn2r56	UTSW	7	12,449,351 (GRCm39)	missense	probably benign	0.00
R8222:Vmn2r56	UTSW	7	12,444,960 (GRCm39)	missense	probably benign
R8282:Vmn2r56	UTSW	7	12,449,601 (GRCm39)	nonsense	probably null
R8786:Vmn2r56	UTSW	7	12,449,393 (GRCm39)	missense	probably damaging	1.00
R8970:Vmn2r56	UTSW	7	12,428,632 (GRCm39)	missense	probably damaging	1.00
R9230:Vmn2r56	UTSW	7	12,444,237 (GRCm39)	missense	possibly damaging	0.70
RF002:Vmn2r56	UTSW	7	12,428,757 (GRCm39)	missense	probably benign	0.02

Predicted Primers

PCR Primer
(F):5'- GCCAAATGTGCCTTGCAACACC -3'
(R):5'- ATTCGGACCCTGACTAGTGACCTC -3'

Sequencing Primer
(F):5'- CTTGCAACACCTGGGAAATG -3'
(R):5'- AGCTGATAATTCACTTCCAGTGGTC -3'

Posted On

2013-04-16