Incidental Mutation 'R2299:C1qtnf6'
ID245278
Institutional Source Beutler Lab
Gene Symbol C1qtnf6
Ensembl Gene ENSMUSG00000022440
Gene NameC1q and tumor necrosis factor related protein 6
SynonymsCTRP6, 2810036M19Rik
MMRRC Submission 040298-MU
Accession Numbers
Is this an essential gene? Non essential (E-score: 0.000) question?
Stock #R2299 (G1)
Quality Score225
Status Validated
Chromosome15
Chromosomal Location78523346-78531416 bp(-) (GRCm38)
Type of Mutationmissense
DNA Base Change (assembly) T to A at 78525342 bp
ZygosityHeterozygous
Amino Acid Change Threonine to Serine at position 102 (T102S)
Ref Sequence ENSEMBL: ENSMUSP00000023075 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000023075] [ENSMUST00000229185] [ENSMUST00000230943]
Predicted Effect probably benign
Transcript: ENSMUST00000023075
AA Change: T102S

PolyPhen 2 Score 0.002 (Sensitivity: 0.99; Specificity: 0.30)
SMART Domains Protein: ENSMUSP00000023075
Gene: ENSMUSG00000022440
AA Change: T102S

DomainStartEndE-ValueType
signal peptide 1 24 N/A INTRINSIC
low complexity region 82 104 N/A INTRINSIC
C1Q 123 262 1.01e-11 SMART
Predicted Effect noncoding transcript
Transcript: ENSMUST00000137827
Predicted Effect noncoding transcript
Transcript: ENSMUST00000147093
Predicted Effect probably benign
Transcript: ENSMUST00000229185
Predicted Effect probably benign
Transcript: ENSMUST00000230943
Meta Mutation Damage Score 0.0898 question?
Coding Region Coverage
  • 1x: 99.2%
  • 3x: 98.6%
  • 10x: 97.2%
  • 20x: 94.8%
Validation Efficiency 100% (37/37)
Allele List at MGI
Other mutations in this stock
Total: 36 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
4930415L06Rik A G X: 89,932,399 M64T possibly damaging Het
4933434E20Rik A G 3: 90,064,538 N68S possibly damaging Het
5031439G07Rik A C 15: 84,953,285 F276V possibly damaging Het
Abca12 C T 1: 71,258,222 V2370I probably damaging Het
Acsl3 T G 1: 78,699,110 C469W probably damaging Het
Adgrg5 A T 8: 94,938,576 I372F possibly damaging Het
Ankrd42 A G 7: 92,590,254 I442T probably benign Het
Arsi G A 18: 60,916,651 G202E probably benign Het
Bmpr1b C A 3: 141,845,202 R376L probably damaging Het
Chordc1 T C 9: 18,302,108 L85P probably damaging Het
Clec2j T A 6: 128,655,236 noncoding transcript Het
Copa T C 1: 172,121,725 I1223T probably benign Het
Crygs C T 16: 22,805,551 G102D possibly damaging Het
Cyfip2 T A 11: 46,286,131 E74V probably benign Het
Dsg1a A T 18: 20,340,150 D760V probably damaging Het
Folr1 A G 7: 101,863,992 L32P probably damaging Het
Galnt13 A T 2: 55,060,583 R425S possibly damaging Het
Gm4559 A T 7: 142,273,835 C177S unknown Het
H3f3a C T 1: 180,803,138 R117H probably benign Het
Hist1h2bh A G 13: 23,543,184 S57P probably damaging Het
Kansl1l T C 1: 66,773,477 D459G probably damaging Het
Limd1 A T 9: 123,516,877 K574* probably null Het
Mmrn1 A G 6: 60,976,441 K569E probably damaging Het
Olfr583 T C 7: 103,051,582 W95R probably damaging Het
Ppwd1 T C 13: 104,220,063 M315V probably benign Het
Prss21 A G 17: 23,869,589 E176G probably benign Het
Ptpn23 A G 9: 110,392,513 I173T possibly damaging Het
Rit1 T A 3: 88,726,070 probably null Het
Rnf14 C T 18: 38,308,085 A176V probably benign Het
Sema5a T A 15: 32,562,776 V311E possibly damaging Het
Slc28a2 C T 2: 122,441,778 Q34* probably null Het
Spire1 A C 18: 67,530,423 L36R probably damaging Het
Usp33 T A 3: 152,374,621 V463E probably damaging Het
Vcpip1 A G 1: 9,745,719 L813S possibly damaging Het
Vmn1r174 A T 7: 23,754,004 I32F probably benign Het
Zbtb24 G A 10: 41,464,581 V536M probably damaging Het
Other mutations in C1qtnf6
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00228:C1qtnf6 APN 15 78524894 missense probably damaging 1.00
IGL01534:C1qtnf6 APN 15 78525216 missense probably benign 0.44
IGL02072:C1qtnf6 APN 15 78527351 nonsense probably null
Santa UTSW 15 78524892 splice site probably null
R1524:C1qtnf6 UTSW 15 78524892 splice site probably null
R1720:C1qtnf6 UTSW 15 78527440 missense probably damaging 0.99
R4271:C1qtnf6 UTSW 15 78525266 missense probably benign 0.01
R5731:C1qtnf6 UTSW 15 78527314 missense probably benign 0.00
R6118:C1qtnf6 UTSW 15 78525395 missense probably damaging 0.99
R7140:C1qtnf6 UTSW 15 78525083 missense probably benign 0.00
R7218:C1qtnf6 UTSW 15 78527374 missense probably benign 0.00
R7317:C1qtnf6 UTSW 15 78525006 missense probably damaging 1.00
R7438:C1qtnf6 UTSW 15 78525374 missense probably benign
R7461:C1qtnf6 UTSW 15 78527349 missense probably benign 0.00
R8122:C1qtnf6 UTSW 15 78527246 missense probably benign 0.05
X0022:C1qtnf6 UTSW 15 78525035 missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- TCCGTGTTCACAAAGACCCTG -3'
(R):5'- AGTTTCACTTCTGCAGAATGGG -3'

Sequencing Primer
(F):5'- ACCCTGTCGAACAGCAGTGAG -3'
(R):5'- CAGCATGCAGTTAGGTGCTC -3'
Posted On2014-10-30