Mutagenetix > Incidental Mutation

Incidental Mutation 'R2321:Men1'

245661

Institutional Source

Beutler Lab

Gene Symbol

Men1

Ensembl Gene

ENSMUSG00000024947

Gene Name

multiple endocrine neoplasia 1

Synonyms

menin

MMRRC Submission

040313-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R2321 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

6385009-6390921 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 6389868 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Aspartic acid to Glycine at position 466 (D466G)

Ref Sequence

ENSEMBL: ENSMUSP00000109129 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000025897] [ENSMUST00000056391] [ENSMUST00000078137] [ENSMUST00000079327] [ENSMUST00000113500] [ENSMUST00000113501] [ENSMUST00000113502] [ENSMUST00000113503] [ENSMUST00000113504] [ENSMUST00000130382] [ENSMUST00000152349] [ENSMUST00000124556] [ENSMUST00000142496] [ENSMUST00000170132] [ENSMUST00000166909]

AlphaFold

O88559

Predicted Effect

probably benign
Transcript: ENSMUST00000025897

SMART Domains

Protein: ENSMUSP00000025897
Gene: ENSMUSG00000024948

Domain	Start	End	E-Value	Type
S_TKc	16	273	2.41e-90	SMART
low complexity region	358	369	N/A	INTRINSIC
low complexity region	425	444	N/A	INTRINSIC
CNH	488	801	1.31e-128	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000056391
AA Change: D501G

PolyPhen 2 Score 0.135 (Sensitivity: 0.92; Specificity: 0.86)

SMART Domains

Protein: ENSMUSP00000058149
Gene: ENSMUSG00000024947
AA Change: D501G

Domain	Start	End	E-Value	Type
Pfam:Menin	1	611	N/A	PFAM

Predicted Effect

possibly damaging
Transcript: ENSMUST00000078137
AA Change: D446G

PolyPhen 2 Score 0.904 (Sensitivity: 0.82; Specificity: 0.94)

SMART Domains

Protein: ENSMUSP00000077272
Gene: ENSMUSG00000024947
AA Change: D446G

Domain	Start	End	E-Value	Type
Pfam:Menin	1	396	2.6e-241	PFAM
Pfam:Menin	392	556	1.5e-62	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000079327
AA Change: D501G

PolyPhen 2 Score 0.135 (Sensitivity: 0.92; Specificity: 0.86)

SMART Domains

Protein: ENSMUSP00000078306
Gene: ENSMUSG00000024947
AA Change: D501G

Domain	Start	End	E-Value	Type
Pfam:Menin	1	611	N/A	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000113500
AA Change: D501G

PolyPhen 2 Score 0.135 (Sensitivity: 0.92; Specificity: 0.86)

SMART Domains

Protein: ENSMUSP00000109128
Gene: ENSMUSG00000024947
AA Change: D501G

Domain	Start	End	E-Value	Type
Pfam:Menin	1	611	N/A	PFAM

Predicted Effect

possibly damaging
Transcript: ENSMUST00000113501
AA Change: D466G

PolyPhen 2 Score 0.922 (Sensitivity: 0.81; Specificity: 0.94)

SMART Domains

Protein: ENSMUSP00000109129
Gene: ENSMUSG00000024947
AA Change: D466G

Domain	Start	End	E-Value	Type
Pfam:Menin	1	183	2.6e-104	PFAM
Pfam:Menin	184	576	3.2e-213	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000113502
AA Change: D507G

PolyPhen 2 Score 0.135 (Sensitivity: 0.92; Specificity: 0.86)

SMART Domains

Protein: ENSMUSP00000109130
Gene: ENSMUSG00000024947
AA Change: D507G

Domain	Start	End	E-Value	Type
Pfam:Menin	7	515	1.5e-254	PFAM
Pfam:Menin	536	615	4.9e-26	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000113503
AA Change: D506G

PolyPhen 2 Score 0.135 (Sensitivity: 0.92; Specificity: 0.86)

SMART Domains

Protein: ENSMUSP00000109131
Gene: ENSMUSG00000024947
AA Change: D506G

Domain	Start	End	E-Value	Type
Pfam:Menin	1	616	N/A	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000113504
AA Change: D501G

PolyPhen 2 Score 0.135 (Sensitivity: 0.92; Specificity: 0.86)

SMART Domains

Protein: ENSMUSP00000109132
Gene: ENSMUSG00000024947
AA Change: D501G

Domain	Start	End	E-Value	Type
Pfam:Menin	1	611	N/A	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000152259

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000134307

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000149624

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000123468

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000133696

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000148410

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000124333

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000127809

Predicted Effect

probably benign
Transcript: ENSMUST00000130382

SMART Domains

Protein: ENSMUSP00000120123
Gene: ENSMUSG00000024948

Domain	Start	End	E-Value	Type
S_TKc	16	233	3.4e-14	SMART
low complexity region	314	325	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000152349

SMART Domains

Protein: ENSMUSP00000115741
Gene: ENSMUSG00000024948

Domain	Start	End	E-Value	Type
Pfam:Pkinase	16	57	3.7e-7	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000124556

SMART Domains

Protein: ENSMUSP00000121375
Gene: ENSMUSG00000024948

Domain	Start	End	E-Value	Type
Pfam:Pkinase	16	56	4e-7	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000142496

SMART Domains

Protein: ENSMUSP00000114243
Gene: ENSMUSG00000024948

Domain	Start	End	E-Value	Type
Pfam:Pkinase	16	56	4e-7	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000152912

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000155569

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000156154

Predicted Effect

probably benign
Transcript: ENSMUST00000170292

SMART Domains

Protein: ENSMUSP00000128607
Gene: ENSMUSG00000024947

Domain	Start	End	E-Value	Type
Pfam:Menin	4	106	1.2e-28	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000170132

SMART Domains

Protein: ENSMUSP00000126655
Gene: ENSMUSG00000024947

Domain	Start	End	E-Value	Type
Pfam:Menin	1	135	1.6e-81	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000166909

SMART Domains

Protein: ENSMUSP00000133085
Gene: ENSMUSG00000024947

Domain	Start	End	E-Value	Type
Pfam:Menin	1	62	8.9e-29	PFAM

Meta Mutation Damage Score

0.1206

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.2%
20x: 94.7%

Validation Efficiency

100% (39/39)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes menin, a putative tumor suppressor associated with a syndrome known as multiple endocrine neoplasia type 1. In vitro studies have shown menin is localized to the nucleus, possesses two functional nuclear localization signals, and inhibits transcriptional activation by JunD, however, the function of this protein is not known. Two messages have been detected on northern blots but the larger message has not been characterized. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Oct 2008]
PHENOTYPE: Homozygotes for targeted null mutations die at embryonic day 11.5-13.5 with reduced size, edema, open neural tube and defects of the nervous system, heart and liver. Heterozygotes develop tumors of the pancreas, parathyroid, thyroid, adrenal and pituitary. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 36 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
A2ml1	C	T	6: 128,557,349 (GRCm39)	A115T	probably benign	Het
Abcf2	A	T	5: 24,772,251 (GRCm39)	Y492*	probably null	Het
Adcy9	A	G	16: 4,106,132 (GRCm39)	V994A	probably damaging	Het
Arhgef40	T	C	14: 52,231,733 (GRCm39)		probably benign	Het
Bhlha15	T	C	5: 144,128,014 (GRCm39)	L42P	probably damaging	Het
Clca4b	C	A	3: 144,638,134 (GRCm39)	A43S	probably benign	Het
Cpq	A	G	15: 33,594,291 (GRCm39)	H434R	probably benign	Het
Crybg2	A	G	4: 133,801,822 (GRCm39)	E994G	probably benign	Het
Dcaf1	T	C	9: 106,715,672 (GRCm39)	L263S	probably benign	Het
Dnajc12	G	T	10: 63,242,990 (GRCm39)		probably benign	Het
Fbxo32	T	C	15: 58,054,689 (GRCm39)	I215V	possibly damaging	Het
Krtap17-1	T	C	11: 99,884,746 (GRCm39)	D7G	unknown	Het
Myh15	T	A	16: 48,933,436 (GRCm39)	F624I	possibly damaging	Het
Ncam1	A	C	9: 49,456,132 (GRCm39)		probably benign	Het
Or2y1d	A	G	11: 49,322,107 (GRCm39)	N268S	probably benign	Het
Otol1	T	A	3: 69,925,858 (GRCm39)	L11*	probably null	Het
Plekhg4	T	C	8: 106,104,172 (GRCm39)	S447P	probably benign	Het
Pnma8b	G	T	7: 16,679,490 (GRCm39)	R158L	unknown	Het
Ppp1r2	A	T	16: 31,084,121 (GRCm39)		probably null	Het
Rad51ap2	G	A	12: 11,507,058 (GRCm39)	G327R	probably damaging	Het
Rbm26	T	C	14: 105,390,863 (GRCm39)	T208A	unknown	Het
Reln	T	C	5: 22,120,018 (GRCm39)	Y2878C	probably damaging	Het
Rnps1	T	A	17: 24,641,142 (GRCm39)	F181I	probably damaging	Het
Senp6	A	C	9: 80,031,022 (GRCm39)	I575L	possibly damaging	Het
Serpinh1	T	C	7: 98,995,592 (GRCm39)	D330G	probably damaging	Het
Slamf9	G	T	1: 172,304,980 (GRCm39)	C198F	probably damaging	Het
Slc22a13	A	T	9: 119,024,694 (GRCm39)	V261D	possibly damaging	Het
Slc26a4	A	G	12: 31,590,543 (GRCm39)	V370A	probably damaging	Het
Tasp1	A	G	2: 139,899,332 (GRCm39)	M7T	probably benign	Het
Tet2	T	C	3: 133,192,100 (GRCm39)	N778S	possibly damaging	Het
Tm9sf4	T	A	2: 153,046,506 (GRCm39)	Y582N	probably damaging	Het
Tmem131l	T	A	3: 83,843,330 (GRCm39)	H508L	probably damaging	Het
Tmem71	T	G	15: 66,423,849 (GRCm39)	D139A	possibly damaging	Het
Uroc1	A	G	6: 90,324,229 (GRCm39)	R418G	possibly damaging	Het
Wdr64	A	C	1: 175,622,653 (GRCm39)	K810T	possibly damaging	Het
Zgrf1	C	A	3: 127,356,056 (GRCm39)	Y427*	probably null	Het

Other mutations in Men1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00158:Men1	APN	19	6,387,237 (GRCm39)	splice site	probably null
IGL00160:Men1	APN	19	6,387,237 (GRCm39)	splice site	probably null
IGL00161:Men1	APN	19	6,387,237 (GRCm39)	splice site	probably null
IGL00229:Men1	APN	19	6,387,237 (GRCm39)	splice site	probably null
IGL00231:Men1	APN	19	6,387,237 (GRCm39)	splice site	probably null
IGL00232:Men1	APN	19	6,387,237 (GRCm39)	splice site	probably null
IGL00434:Men1	APN	19	6,387,237 (GRCm39)	splice site	probably null
IGL00467:Men1	APN	19	6,387,237 (GRCm39)	splice site	probably null
IGL00468:Men1	APN	19	6,387,237 (GRCm39)	splice site	probably null
IGL00470:Men1	APN	19	6,387,237 (GRCm39)	splice site	probably null
IGL00476:Men1	APN	19	6,387,237 (GRCm39)	splice site	probably null
IGL02305:Men1	APN	19	6,390,168 (GRCm39)	missense	probably damaging	1.00
R0468:Men1	UTSW	19	6,386,953 (GRCm39)	missense	probably null	0.99
R0856:Men1	UTSW	19	6,385,888 (GRCm39)	missense	probably damaging	1.00
R1384:Men1	UTSW	19	6,389,921 (GRCm39)	missense	probably benign	0.12
R1870:Men1	UTSW	19	6,387,660 (GRCm39)	missense	probably damaging	1.00
R1987:Men1	UTSW	19	6,388,867 (GRCm39)	missense	probably damaging	0.99
R4538:Men1	UTSW	19	6,386,784 (GRCm39)	missense	possibly damaging	0.89
R4763:Men1	UTSW	19	6,385,102 (GRCm39)	critical splice donor site	probably null
R6147:Men1	UTSW	19	6,387,272 (GRCm39)	missense	probably damaging	0.97
R7598:Men1	UTSW	19	6,389,735 (GRCm39)	missense	probably benign	0.06
R7726:Men1	UTSW	19	6,387,312 (GRCm39)	critical splice donor site	probably null
R7949:Men1	UTSW	19	6,388,323 (GRCm39)	missense	possibly damaging	0.80
R8283:Men1	UTSW	19	6,386,848 (GRCm39)	missense	probably damaging	1.00
R8290:Men1	UTSW	19	6,388,316 (GRCm39)	missense	probably benign	0.09
R8998:Men1	UTSW	19	6,389,960 (GRCm39)	missense	probably benign	0.03
R8999:Men1	UTSW	19	6,389,960 (GRCm39)	missense	probably benign	0.03
RF002:Men1	UTSW	19	6,390,146 (GRCm39)	missense	probably damaging	0.97

Predicted Primers

PCR Primer
(F):5'- TAGAGGTCCCACGGATGATC -3'
(R):5'- CACCAGTAGCTCCTTCATGC -3'

Sequencing Primer
(F):5'- TCCCACGGATGATCCTCAG -3'
(R):5'- GCCTTTCATCTTCTCACTCTGGAAAG -3'

Posted On

2014-10-30