Incidental Mutation 'R2333:Vmn1r203'
ID |
246506 |
Institutional Source |
Beutler Lab
|
Gene Symbol |
Vmn1r203
|
Ensembl Gene |
ENSMUSG00000069289 |
Gene Name |
vomeronasal 1 receptor 203 |
Synonyms |
V1rh11 |
Accession Numbers |
|
Essential gene? |
Probably non essential
(E-score: 0.080)
|
Stock # |
R2333 (G1)
|
Quality Score |
225 |
Status
|
Not validated
|
Chromosome |
13 |
Chromosomal Location |
22708221-22709156 bp(+) (GRCm39) |
Type of Mutation |
missense |
DNA Base Change (assembly) |
A to G
at 22709113 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Aspartic acid to Glycine
at position 298
(D298G)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000154399
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000091729]
[ENSMUST00000227520]
[ENSMUST00000228889]
|
AlphaFold |
Q8R273 |
Predicted Effect |
probably damaging
Transcript: ENSMUST00000091729
AA Change: D298G
PolyPhen 2
Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)
|
SMART Domains |
Protein: ENSMUSP00000089322 Gene: ENSMUSG00000069289 AA Change: D298G
Domain | Start | End | E-Value | Type |
transmembrane domain
|
19 |
41 |
N/A |
INTRINSIC |
Pfam:V1R
|
43 |
304 |
5.8e-35 |
PFAM |
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000137651
|
Predicted Effect |
probably damaging
Transcript: ENSMUST00000227520
AA Change: D298G
PolyPhen 2
Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)
|
Predicted Effect |
probably damaging
Transcript: ENSMUST00000228889
AA Change: D298G
PolyPhen 2
Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)
|
Coding Region Coverage |
- 1x: 99.0%
- 3x: 98.6%
- 10x: 97.3%
- 20x: 95.1%
|
Validation Efficiency |
|
Allele List at MGI |
|
Other mutations in this stock |
Total: 14 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
Bag4 |
C |
T |
8: 26,259,516 (GRCm39) |
A228T |
probably benign |
Het |
Brd4 |
C |
T |
17: 32,440,431 (GRCm39) |
D302N |
probably damaging |
Het |
Celsr2 |
T |
C |
3: 108,305,921 (GRCm39) |
N2061S |
probably benign |
Het |
Col1a2 |
A |
T |
6: 4,532,747 (GRCm39) |
M791L |
unknown |
Het |
Dmxl1 |
A |
G |
18: 50,053,043 (GRCm39) |
|
probably null |
Het |
Elp1 |
A |
G |
4: 56,775,456 (GRCm39) |
V701A |
probably benign |
Het |
Grm1 |
A |
G |
10: 10,595,090 (GRCm39) |
V846A |
probably damaging |
Het |
Grm1 |
G |
A |
10: 10,595,363 (GRCm39) |
A755V |
probably benign |
Het |
Ltbp4 |
C |
T |
7: 27,027,203 (GRCm39) |
R389Q |
possibly damaging |
Het |
Naip5 |
A |
G |
13: 100,359,679 (GRCm39) |
I519T |
probably damaging |
Het |
Resf1 |
T |
A |
6: 149,229,009 (GRCm39) |
I685K |
probably damaging |
Het |
Tmem100 |
A |
G |
11: 89,926,424 (GRCm39) |
I84V |
probably benign |
Het |
Tnik |
C |
T |
3: 28,587,145 (GRCm39) |
R139W |
probably damaging |
Het |
Zfp324 |
A |
G |
7: 12,705,172 (GRCm39) |
T454A |
possibly damaging |
Het |
|
Other mutations in Vmn1r203 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL01356:Vmn1r203
|
APN |
13 |
22,708,947 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL01527:Vmn1r203
|
APN |
13 |
22,708,447 (GRCm39) |
missense |
possibly damaging |
0.89 |
IGL01808:Vmn1r203
|
APN |
13 |
22,708,717 (GRCm39) |
missense |
probably benign |
0.02 |
IGL01887:Vmn1r203
|
APN |
13 |
22,709,046 (GRCm39) |
missense |
probably benign |
0.00 |
IGL02340:Vmn1r203
|
APN |
13 |
22,708,997 (GRCm39) |
nonsense |
probably null |
|
IGL02543:Vmn1r203
|
APN |
13 |
22,709,074 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL02684:Vmn1r203
|
APN |
13 |
22,708,539 (GRCm39) |
missense |
possibly damaging |
0.95 |
BB005:Vmn1r203
|
UTSW |
13 |
22,708,705 (GRCm39) |
missense |
probably benign |
0.01 |
BB015:Vmn1r203
|
UTSW |
13 |
22,708,705 (GRCm39) |
missense |
probably benign |
0.01 |
PIT4519001:Vmn1r203
|
UTSW |
13 |
22,708,765 (GRCm39) |
missense |
probably benign |
0.01 |
R0544:Vmn1r203
|
UTSW |
13 |
22,708,443 (GRCm39) |
missense |
possibly damaging |
0.94 |
R1365:Vmn1r203
|
UTSW |
13 |
22,708,756 (GRCm39) |
missense |
probably benign |
0.00 |
R1396:Vmn1r203
|
UTSW |
13 |
22,708,678 (GRCm39) |
missense |
probably benign |
0.01 |
R1794:Vmn1r203
|
UTSW |
13 |
22,708,521 (GRCm39) |
missense |
probably damaging |
1.00 |
R2010:Vmn1r203
|
UTSW |
13 |
22,708,617 (GRCm39) |
missense |
possibly damaging |
0.56 |
R2169:Vmn1r203
|
UTSW |
13 |
22,708,905 (GRCm39) |
nonsense |
probably null |
|
R2418:Vmn1r203
|
UTSW |
13 |
22,709,004 (GRCm39) |
missense |
possibly damaging |
0.57 |
R2419:Vmn1r203
|
UTSW |
13 |
22,709,004 (GRCm39) |
missense |
possibly damaging |
0.57 |
R4322:Vmn1r203
|
UTSW |
13 |
22,708,408 (GRCm39) |
missense |
probably damaging |
1.00 |
R4460:Vmn1r203
|
UTSW |
13 |
22,708,852 (GRCm39) |
missense |
probably damaging |
0.98 |
R4686:Vmn1r203
|
UTSW |
13 |
22,708,528 (GRCm39) |
missense |
probably damaging |
1.00 |
R5526:Vmn1r203
|
UTSW |
13 |
22,708,273 (GRCm39) |
missense |
probably benign |
0.01 |
R6240:Vmn1r203
|
UTSW |
13 |
22,708,899 (GRCm39) |
missense |
possibly damaging |
0.89 |
R6607:Vmn1r203
|
UTSW |
13 |
22,708,891 (GRCm39) |
missense |
probably benign |
0.23 |
R7575:Vmn1r203
|
UTSW |
13 |
22,708,588 (GRCm39) |
missense |
probably benign |
0.12 |
R7928:Vmn1r203
|
UTSW |
13 |
22,708,705 (GRCm39) |
missense |
probably benign |
0.01 |
R8375:Vmn1r203
|
UTSW |
13 |
22,709,154 (GRCm39) |
makesense |
probably null |
|
R8421:Vmn1r203
|
UTSW |
13 |
22,709,154 (GRCm39) |
makesense |
probably null |
|
R8424:Vmn1r203
|
UTSW |
13 |
22,709,004 (GRCm39) |
missense |
probably damaging |
1.00 |
R8845:Vmn1r203
|
UTSW |
13 |
22,708,720 (GRCm39) |
missense |
possibly damaging |
0.81 |
R8933:Vmn1r203
|
UTSW |
13 |
22,708,691 (GRCm39) |
missense |
possibly damaging |
0.69 |
R8956:Vmn1r203
|
UTSW |
13 |
22,709,004 (GRCm39) |
missense |
possibly damaging |
0.57 |
R9493:Vmn1r203
|
UTSW |
13 |
22,708,423 (GRCm39) |
missense |
probably damaging |
1.00 |
Z1177:Vmn1r203
|
UTSW |
13 |
22,708,579 (GRCm39) |
missense |
probably damaging |
0.97 |
|
Predicted Primers |
PCR Primer
(F):5'- TCAGAACTCCAAGCTTCTCTACAG -3'
(R):5'- TCTCAGATCAAGGGTGTGAAAC -3'
Sequencing Primer
(F):5'- AGAACTCCCCCTGAGCTGAGAG -3'
(R):5'- GTGTGAAACAATAAGAAGATTGTCTG -3'
|
Posted On |
2014-10-30 |