Mutagenetix > Incidental Mutation

Incidental Mutation 'R2358:Zyg11a'

247002

Institutional Source

Beutler Lab

Gene Symbol

Zyg11a

Ensembl Gene

ENSMUSG00000034645

Gene Name

zyg-11 family member A, cell cycle regulator

Synonyms

MMRRC Submission

040340-MU

Accession Numbers

Is this an essential gene?

Probably non essential (E-score: 0.155) question?

Stock #

R2358 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

108181738-108218048 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

G to T at 108196146 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Glutamine to Lysine at position 440 (Q440K)

Ref Sequence

ENSEMBL: ENSMUSP00000038478 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000043793] [ENSMUST00000106690] [ENSMUST00000223127]

AlphaFold

no structure available at present

Predicted Effect

possibly damaging
Transcript: ENSMUST00000043793
AA Change: Q440K

PolyPhen 2 Score 0.944 (Sensitivity: 0.80; Specificity: 0.95)

SMART Domains

Protein: ENSMUSP00000038478
Gene: ENSMUSG00000034645
AA Change: Q440K

Domain	Start	End	E-Value	Type
SCOP:d1jdha_	218	700	2e-11	SMART
Blast:ARM	497	544	1e-5	BLAST
Blast:ARM	547	587	5e-7	BLAST

Predicted Effect

probably benign
Transcript: ENSMUST00000106690
AA Change: Q442K

PolyPhen 2 Score 0.325 (Sensitivity: 0.90; Specificity: 0.89)

SMART Domains

Protein: ENSMUSP00000102301
Gene: ENSMUSG00000034645
AA Change: Q442K

Domain	Start	End	E-Value	Type
SCOP:d1jdha_	139	621	1e-11	SMART
Blast:ARM	418	465	1e-5	BLAST
Blast:ARM	468	508	1e-7	BLAST

Predicted Effect

probably benign
Transcript: ENSMUST00000223127
AA Change: Q442K

PolyPhen 2 Score 0.259 (Sensitivity: 0.91; Specificity: 0.88)

Meta Mutation Damage Score

0.5253

Coding Region Coverage

1x: 99.3%
3x: 98.7%
10x: 97.3%
20x: 95.1%

Validation Efficiency

98% (55/56)

Allele List at MGI

Other mutations in this stock

Total: 55 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abcb9	CGG	CG	5: 124,077,305		probably null	Het
Aif1l	T	A	2: 31,969,751	F94L	probably damaging	Het
Ankzf1	C	T	1: 75,195,251	H209Y	probably damaging	Het
Ate1	A	T	7: 130,516,165	M30K	probably damaging	Het
Cd27	A	G	6: 125,233,318	Y189H	probably damaging	Het
Cela1	A	G	15: 100,681,228	I183T	probably benign	Het
Copg2	A	T	6: 30,826,233	L259*	probably null	Het
Efcab7	T	A	4: 99,831,586		probably benign	Het
Fcrl5	A	G	3: 87,446,419	E357G	probably damaging	Het
Fzr1	C	T	10: 81,367,640		probably null	Het
Gm10696	G	A	3: 94,175,547	A319V	possibly damaging	Het
Gm10696	C	A	3: 94,175,548	A319S	possibly damaging	Het
Il12rb2	C	T	6: 67,298,195	A649T	probably damaging	Het
Itfg1	C	A	8: 85,738,129	V438F	probably damaging	Het
Jaml	A	C	9: 45,101,063	I283L	possibly damaging	Het
Kif28	A	T	1: 179,709,459	H486Q	probably damaging	Het
Lrch4	A	G	5: 137,638,548		probably benign	Het
Lrfn2	A	G	17: 49,071,160	E423G	possibly damaging	Het
Lrp4	T	A	2: 91,501,954	N1665K	probably benign	Het
Mrpl32	A	T	13: 14,610,580	V157E	probably damaging	Het
Mta3	A	G	17: 83,762,988	I193V	probably damaging	Het
Myom2	G	A	8: 15,112,018	V984I	possibly damaging	Het
Nedd4l	G	A	18: 65,209,719	V909I	possibly damaging	Het
Nlrp4a	A	G	7: 26,464,198	D930G	probably benign	Het
Olfr121	T	A	17: 37,752,380	C175*	probably null	Het
Olfr1351	T	C	10: 79,018,188	F289L	probably damaging	Het
Olfr74	A	T	2: 87,973,722	N314K	probably benign	Het
Ovch2	A	T	7: 107,794,915	H110Q	probably damaging	Het
Pcnx3	G	A	19: 5,683,339	Q155*	probably null	Het
Pcnx3	C	G	19: 5,683,340	L1F	probably null	Het
Pi4k2a	G	A	19: 42,090,692	R64Q	probably damaging	Het
Ptpn12	G	A	5: 20,998,692	P363S	probably damaging	Het
Rbm27	T	C	18: 42,292,112		probably benign	Het
Ripor3	A	G	2: 167,983,865		probably benign	Het
Rpl13-ps3	A	G	14: 58,893,816		noncoding transcript	Het
Sap18b	G	A	8: 95,825,563	R67H	probably benign	Het
Sdhb	T	C	4: 140,973,000	V137A	probably damaging	Het
Shmt2	T	C	10: 127,518,028	T459A	probably benign	Het
Siglecg	A	G	7: 43,409,422	S200G	possibly damaging	Het
Slc6a15	T	G	10: 103,416,785	I603S	probably benign	Het
Smtn	A	T	11: 3,532,865		probably null	Het
Spata31d1a	G	A	13: 59,703,888	S142L	probably benign	Het
Spopl	C	T	2: 23,537,380	R221Q	probably damaging	Het
St5	A	T	7: 109,556,446	S366T	probably benign	Het
Strip1	A	G	3: 107,615,819	V633A	probably benign	Het
Sun2	A	G	15: 79,727,913	S522P	possibly damaging	Het
Tectb	C	G	19: 55,180,999		probably benign	Het
Terb2	T	A	2: 122,198,432	C157S	probably benign	Het
Themis	T	A	10: 28,863,380	N615K	possibly damaging	Het
Tlnrd1	A	T	7: 83,882,280	D314E	probably benign	Het
Vmn1r205	T	A	13: 22,592,396	T179S	probably benign	Het
Vsig10l	G	A	7: 43,468,761	R689H	probably benign	Het
Wt1	G	A	2: 105,163,428		probably benign	Het
Zfp423	G	T	8: 87,780,551	A1034D	possibly damaging	Het
Zfy2	T	C	Y: 2,107,272	E454G	possibly damaging	Het

Other mutations in Zyg11a

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01458:Zyg11a	APN	4	108204902	missense	probably damaging	0.99
IGL01517:Zyg11a	APN	4	108201194	missense	probably null	1.00
IGL01619:Zyg11a	APN	4	108205217	missense	probably damaging	1.00
IGL02253:Zyg11a	APN	4	108183695	missense	probably null	0.99
R0090:Zyg11a	UTSW	4	108201347	splice site	probably benign
R0225:Zyg11a	UTSW	4	108204641	missense	probably damaging	1.00
R0610:Zyg11a	UTSW	4	108204857	missense	probably damaging	1.00
R0827:Zyg11a	UTSW	4	108210042	splice site	probably benign
R1568:Zyg11a	UTSW	4	108183646	critical splice donor site	probably null
R1752:Zyg11a	UTSW	4	108205282	missense	possibly damaging	0.81
R2051:Zyg11a	UTSW	4	108192047	splice site	probably benign
R3898:Zyg11a	UTSW	4	108210194	missense	probably damaging	0.99
R4288:Zyg11a	UTSW	4	108184469	missense	probably damaging	1.00
R4381:Zyg11a	UTSW	4	108201320	missense	possibly damaging	0.58
R4709:Zyg11a	UTSW	4	108205071	missense	probably benign	0.00
R4859:Zyg11a	UTSW	4	108210190	missense	probably damaging	0.98
R5303:Zyg11a	UTSW	4	108184432	critical splice donor site	probably null
R5349:Zyg11a	UTSW	4	108183732	missense	probably damaging	1.00
R5363:Zyg11a	UTSW	4	108189622	missense	probably damaging	1.00
R5517:Zyg11a	UTSW	4	108204746	missense	possibly damaging	0.94
R6175:Zyg11a	UTSW	4	108189681	missense	probably benign	0.01
R6254:Zyg11a	UTSW	4	108181794	missense	probably damaging	1.00
R6678:Zyg11a	UTSW	4	108189681	missense	probably benign	0.01
R7524:Zyg11a	UTSW	4	108192074	missense	probably damaging	1.00
R7789:Zyg11a	UTSW	4	108183648	missense	probably damaging	1.00
R8022:Zyg11a	UTSW	4	108189568	critical splice donor site	probably null
R8437:Zyg11a	UTSW	4	108217906	missense	probably damaging	1.00
R8986:Zyg11a	UTSW	4	108184431	critical splice donor site	probably null
R9129:Zyg11a	UTSW	4	108181812	missense	probably benign	0.00
R9383:Zyg11a	UTSW	4	108189729	missense	probably damaging	1.00
R9457:Zyg11a	UTSW	4	108217905	missense	probably damaging	1.00
R9489:Zyg11a	UTSW	4	108205179	missense	probably damaging	0.96
R9511:Zyg11a	UTSW	4	108205223	missense	probably damaging	1.00
X0061:Zyg11a	UTSW	4	108193993	missense	probably damaging	1.00
Z1176:Zyg11a	UTSW	4	108201282	missense	probably damaging	1.00
Z1177:Zyg11a	UTSW	4	108204800	missense	possibly damaging	0.90

Predicted Primers

PCR Primer
(F):5'- AGATTTGTCTTAGCAAATGGTTTTGT -3'
(R):5'- TGTGGCTATAGGAATGAGGAATC -3'

Sequencing Primer
(F):5'- TGGAACTCACTCTGTAGACCAGG -3'
(R):5'- GGAATCATCCATTGGATCTGCCAG -3'

Posted On

2014-10-30