Incidental Mutation 'R2363:Gkn3'
ID 247217
Institutional Source Beutler Lab
Gene Symbol Gkn3
Ensembl Gene ENSMUSG00000030048
Gene Name gastrokine 3
Synonyms 1190003M12Rik
MMRRC Submission 040344-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.054) question?
Stock # R2363 (G1)
Quality Score 225
Status Validated
Chromosome 6
Chromosomal Location 87360301-87365917 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) C to T at 87360507 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Alanine to Threonine at position 163 (A163T)
Ref Sequence ENSEMBL: ENSMUSP00000032127 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000032127] [ENSMUST00000032128]
AlphaFold Q9D0T7
Predicted Effect probably damaging
Transcript: ENSMUST00000032127
AA Change: A163T

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
SMART Domains Protein: ENSMUSP00000032127
Gene: ENSMUSG00000030048
AA Change: A163T

DomainStartEndE-ValueType
transmembrane domain 13 32 N/A INTRINSIC
BRICHOS 63 155 1.47e-26 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000032128
SMART Domains Protein: ENSMUSP00000032128
Gene: ENSMUSG00000030049

DomainStartEndE-ValueType
signal peptide 1 20 N/A INTRINSIC
BRICHOS 54 151 6.63e-34 SMART
Meta Mutation Damage Score 0.6467 question?
Coding Region Coverage
  • 1x: 99.3%
  • 3x: 98.7%
  • 10x: 97.4%
  • 20x: 95.3%
Validation Efficiency 98% (51/52)
Allele List at MGI
Other mutations in this stock
Total: 48 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abtb2 T C 2: 103,397,528 (GRCm39) C153R probably damaging Het
Adam23 A G 1: 63,596,650 (GRCm39) probably null Het
Adpgk G T 9: 59,222,136 (GRCm39) M354I probably benign Het
Atmin G T 8: 117,681,653 (GRCm39) probably null Het
C1rl G A 6: 124,486,069 (GRCm39) G480D probably benign Het
C4b G A 17: 34,955,032 (GRCm39) probably benign Het
Cacnb1 G A 11: 97,903,672 (GRCm39) T127I possibly damaging Het
Cmya5 A T 13: 93,230,210 (GRCm39) V1626E probably benign Het
Cndp2 C T 18: 84,686,694 (GRCm39) G443S probably damaging Het
Crb1 A G 1: 139,265,016 (GRCm39) I134T possibly damaging Het
Dnaaf3 T C 7: 4,535,276 (GRCm39) probably null Het
Enam C T 5: 88,651,008 (GRCm39) P764L probably benign Het
Fat3 G A 9: 15,909,567 (GRCm39) S2145F probably damaging Het
Fbln1 G A 15: 85,111,341 (GRCm39) probably null Het
Flnb A G 14: 7,945,950 (GRCm38) I2452V possibly damaging Het
Fmo3 A T 1: 162,781,884 (GRCm39) W490R probably damaging Het
Gabrb1 C T 5: 72,026,916 (GRCm39) R106* probably null Het
Galnt4 C T 10: 98,944,923 (GRCm39) T216I probably damaging Het
Golph3 A G 15: 12,349,649 (GRCm39) D223G probably benign Het
Herc4 T A 10: 63,151,473 (GRCm39) F905I possibly damaging Het
Il23r T C 6: 67,429,401 (GRCm39) T314A probably benign Het
Lrrtm4 T C 6: 79,998,857 (GRCm39) W90R probably damaging Het
Maml2 C T 9: 13,532,541 (GRCm39) T585I probably damaging Het
Mpp3 G A 11: 101,911,312 (GRCm39) A170V probably damaging Het
Naip6 T A 13: 100,452,928 (GRCm39) K44N possibly damaging Het
Or10aa3 C T 1: 173,878,814 (GRCm39) R292C probably damaging Het
Or10ak7 C T 4: 118,791,230 (GRCm39) E272K probably benign Het
Or1e17 A G 11: 73,831,182 (GRCm39) T37A possibly damaging Het
Or4k51 C T 2: 111,585,139 (GRCm39) P182S probably damaging Het
Or51b6 T A 7: 103,556,267 (GRCm39) M207K probably benign Het
Or6f2 A G 7: 139,756,878 (GRCm39) T282A probably damaging Het
Or7e165 T G 9: 19,694,892 (GRCm39) I154M probably benign Het
Or8c10 T C 9: 38,279,394 (GRCm39) I174T probably damaging Het
Pak1 T A 7: 97,535,521 (GRCm39) V204E probably benign Het
Pcdhb10 T A 18: 37,547,190 (GRCm39) C755* probably null Het
Pcdhb20 A G 18: 37,638,725 (GRCm39) Y417C probably damaging Het
Pkd1l3 G T 8: 110,355,341 (GRCm39) W723L probably benign Het
Plin1 C T 7: 79,376,139 (GRCm39) probably null Het
Polr3a A T 14: 24,525,960 (GRCm39) probably null Het
Ranbp2 A T 10: 58,314,758 (GRCm39) K1826I possibly damaging Het
Rapgef1 A G 2: 29,626,608 (GRCm39) I970V possibly damaging Het
Rdx C A 9: 51,980,173 (GRCm39) F255L probably damaging Het
Rp1l1 A T 14: 64,267,447 (GRCm39) H1011L possibly damaging Het
Serpina6 T C 12: 103,614,868 (GRCm39) D326G probably benign Het
Sh3tc2 A G 18: 62,123,966 (GRCm39) E909G probably benign Het
Shprh T A 10: 11,047,697 (GRCm39) V1015D probably damaging Het
Slfn8 A T 11: 82,894,920 (GRCm39) Y629N probably damaging Het
Triml1 A G 8: 43,594,408 (GRCm39) S8P probably damaging Het
Other mutations in Gkn3
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL02170:Gkn3 APN 6 87,360,493 (GRCm39) missense possibly damaging 0.70
IGL02746:Gkn3 APN 6 87,364,339 (GRCm39) splice site probably benign
IGL03345:Gkn3 APN 6 87,365,798 (GRCm39) missense probably null 0.09
R1758:Gkn3 UTSW 6 87,365,817 (GRCm39) start codon destroyed probably benign
R2303:Gkn3 UTSW 6 87,360,507 (GRCm39) missense probably damaging 1.00
R2304:Gkn3 UTSW 6 87,360,507 (GRCm39) missense probably damaging 1.00
R2365:Gkn3 UTSW 6 87,360,507 (GRCm39) missense probably damaging 1.00
R2897:Gkn3 UTSW 6 87,360,507 (GRCm39) missense probably damaging 1.00
R2898:Gkn3 UTSW 6 87,360,507 (GRCm39) missense probably damaging 1.00
R2983:Gkn3 UTSW 6 87,360,507 (GRCm39) missense probably damaging 1.00
R3031:Gkn3 UTSW 6 87,360,507 (GRCm39) missense probably damaging 1.00
R3426:Gkn3 UTSW 6 87,360,507 (GRCm39) missense probably damaging 1.00
R3433:Gkn3 UTSW 6 87,360,507 (GRCm39) missense probably damaging 1.00
R4085:Gkn3 UTSW 6 87,360,507 (GRCm39) missense probably damaging 1.00
R4086:Gkn3 UTSW 6 87,360,507 (GRCm39) missense probably damaging 1.00
R4087:Gkn3 UTSW 6 87,360,507 (GRCm39) missense probably damaging 1.00
R4088:Gkn3 UTSW 6 87,360,507 (GRCm39) missense probably damaging 1.00
R4089:Gkn3 UTSW 6 87,360,507 (GRCm39) missense probably damaging 1.00
R4090:Gkn3 UTSW 6 87,360,507 (GRCm39) missense probably damaging 1.00
R4163:Gkn3 UTSW 6 87,360,507 (GRCm39) missense probably damaging 1.00
R4164:Gkn3 UTSW 6 87,360,507 (GRCm39) missense probably damaging 1.00
R4720:Gkn3 UTSW 6 87,360,507 (GRCm39) missense probably damaging 1.00
R4721:Gkn3 UTSW 6 87,360,507 (GRCm39) missense probably damaging 1.00
R4722:Gkn3 UTSW 6 87,360,507 (GRCm39) missense probably damaging 1.00
R4723:Gkn3 UTSW 6 87,360,507 (GRCm39) missense probably damaging 1.00
R4766:Gkn3 UTSW 6 87,360,507 (GRCm39) missense probably damaging 1.00
R4941:Gkn3 UTSW 6 87,360,507 (GRCm39) missense probably damaging 1.00
R5004:Gkn3 UTSW 6 87,360,507 (GRCm39) missense probably damaging 1.00
R5163:Gkn3 UTSW 6 87,360,507 (GRCm39) missense probably damaging 1.00
R6078:Gkn3 UTSW 6 87,360,507 (GRCm39) missense probably damaging 1.00
R6079:Gkn3 UTSW 6 87,360,507 (GRCm39) missense probably damaging 1.00
R6502:Gkn3 UTSW 6 87,365,786 (GRCm39) missense probably benign 0.01
R6924:Gkn3 UTSW 6 87,365,784 (GRCm39) missense probably benign 0.05
R7695:Gkn3 UTSW 6 87,361,422 (GRCm39) missense probably damaging 1.00
R9240:Gkn3 UTSW 6 87,365,789 (GRCm39) missense probably benign 0.00
Predicted Primers PCR Primer
(F):5'- AGGTAGAAATGCACTTATTCCCC -3'
(R):5'- GCTAAGGGGTTACAAAGCGC -3'

Sequencing Primer
(F):5'- CCAGATCACAAGGTTCCATGGG -3'
(R):5'- GGTTACAAAGCGCAATAAAAGAACC -3'
Posted On 2014-10-30