Incidental Mutation 'R1456:Tbc1d4'
ID 247315
Institutional Source Beutler Lab
Gene Symbol Tbc1d4
Ensembl Gene ENSMUSG00000033083
Gene Name TBC1 domain family, member 4
Synonyms AS160, 5930406J04Rik
MMRRC Submission 039511-MU
Accession Numbers
Essential gene? Non essential (E-score: 0.000) question?
Stock # R1456 (G1)
Quality Score 74
Status Validated
Chromosome 14
Chromosomal Location 101679796-101846627 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to T at 101744542 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Asparagine to Lysine at position 361 (N361K)
Ref Sequence ENSEMBL: ENSMUSP00000124909 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000100340] [ENSMUST00000161991] [ENSMUST00000162617]
AlphaFold no structure available at present
Predicted Effect probably damaging
Transcript: ENSMUST00000100340
AA Change: N361K

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
SMART Domains Protein: ENSMUSP00000097913
Gene: ENSMUSG00000033083
AA Change: N361K

DomainStartEndE-ValueType
PTB 31 191 2.08e-29 SMART
PTB 197 457 3.16e-29 SMART
low complexity region 708 720 N/A INTRINSIC
Blast:TBC 773 834 3e-12 BLAST
Predicted Effect noncoding transcript
Transcript: ENSMUST00000159484
Predicted Effect noncoding transcript
Transcript: ENSMUST00000159668
Predicted Effect possibly damaging
Transcript: ENSMUST00000159951
AA Change: N73K

PolyPhen 2 Score 0.878 (Sensitivity: 0.82; Specificity: 0.94)
SMART Domains Protein: ENSMUSP00000124511
Gene: ENSMUSG00000033083
AA Change: N73K

DomainStartEndE-ValueType
PTB 28 170 8.6e-22 SMART
Pfam:DUF3350 459 522 2.3e-31 PFAM
TBC 574 794 5.2e-77 SMART
Blast:TBC 819 877 7e-24 BLAST
Blast:TBC 882 936 1e-20 BLAST
Predicted Effect noncoding transcript
Transcript: ENSMUST00000160297
Predicted Effect noncoding transcript
Transcript: ENSMUST00000160473
Predicted Effect probably damaging
Transcript: ENSMUST00000161991
AA Change: N361K

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
SMART Domains Protein: ENSMUSP00000125509
Gene: ENSMUSG00000033083
AA Change: N361K

DomainStartEndE-ValueType
PTB 31 191 2.08e-29 SMART
PTB 197 457 3.16e-29 SMART
Pfam:DUF3350 746 809 1.2e-27 PFAM
TBC 860 1080 5.2e-77 SMART
Blast:TBC 1105 1163 1e-23 BLAST
Blast:TBC 1168 1222 1e-20 BLAST
Predicted Effect probably damaging
Transcript: ENSMUST00000162617
AA Change: N361K

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
SMART Domains Protein: ENSMUSP00000124909
Gene: ENSMUSG00000033083
AA Change: N361K

DomainStartEndE-ValueType
PTB 31 191 2.08e-29 SMART
PTB 197 457 3.16e-29 SMART
low complexity region 708 720 N/A INTRINSIC
Pfam:DUF3350 809 872 3.3e-31 PFAM
TBC 923 1143 5.2e-77 SMART
Blast:TBC 1168 1226 2e-23 BLAST
Blast:TBC 1231 1285 1e-20 BLAST
Meta Mutation Damage Score 0.6467 question?
Coding Region Coverage
  • 1x: 98.9%
  • 3x: 97.9%
  • 10x: 95.1%
  • 20x: 88.9%
Validation Efficiency 98% (90/92)
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene is a member of the Tre-2/BUB2/CDC16 domain family. The protein encoded by this gene is a Rab-GTPase-activating protein, and contains two phopshotyrosine-binding domains (PTB1 and PTB2), a calmodulin-binding domain (CBD), a Rab-GTPase domain, and multiple AKT phosphomotifs. This protein is thought to play an important role in glucose homeostasis by regulating the insulin-dependent trafficking of the glucose transporter 4 (GLUT4), important for removing glucose from the bloodstream into skeletal muscle and fat tissues. Reduced expression of this gene results in an increase in GLUT4 levels at the plasma membrane, suggesting that this protein is important in intracellular retention of GLUT4 under basal conditions. When exposed to insulin, this protein is phosphorylated, dissociates from GLUT4 vesicles, resulting in increased GLUT4 at the cell surface, and enhanced glucose transport. Phosphorylation of this protein by AKT is required for proper translocation of GLUT4 to the cell surface. Individuals homozygous for a mutation in this gene are at higher risk for type 2 diabetes and have higher levels of circulating glucose and insulin levels after glucose ingestion. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Aug 2015]
PHENOTYPE: Mice homozygous for a null allele exhibit reduced blood glucose levels under both fasted and fed conditions, insulin resistance in both muscle and liver, decreased energy expenditure and oxygen consumption, abnormal adipocyte and muscle cell glucose uptake, and increased hepatic gluconeogenesis. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 88 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
4921504E06Rik C T 2: 19,485,731 (GRCm39) probably null Het
4932414N04Rik A T 2: 68,546,558 (GRCm39) E80V possibly damaging Het
Alkbh3 A G 2: 93,831,764 (GRCm39) probably null Het
Ankar A T 1: 72,704,277 (GRCm39) Y664N probably benign Het
Arhgap18 T C 10: 26,792,436 (GRCm39) I629T probably benign Het
Arhgef28 C T 13: 98,211,510 (GRCm39) E158K probably benign Het
Asxl2 C T 12: 3,551,872 (GRCm39) H1205Y possibly damaging Het
Birc6 A G 17: 74,916,285 (GRCm39) I427V probably benign Het
Camk4 A G 18: 33,262,896 (GRCm39) probably benign Het
Ccdc178 A T 18: 22,283,481 (GRCm39) D16E possibly damaging Het
Cct6b G T 11: 82,644,446 (GRCm39) probably benign Het
Ccz1 A G 5: 143,947,836 (GRCm39) probably benign Het
Cdh23 T C 10: 60,322,899 (GRCm39) N335S possibly damaging Het
Cemip T A 7: 83,647,718 (GRCm39) S121C possibly damaging Het
Cers1 A G 8: 70,783,838 (GRCm39) E262G probably damaging Het
Clec11a G T 7: 43,955,874 (GRCm39) P58T possibly damaging Het
Clec16a T C 16: 10,509,419 (GRCm39) I797T probably damaging Het
Col4a1 A C 8: 11,292,829 (GRCm39) probably benign Het
Colgalt2 G A 1: 152,360,655 (GRCm39) V231I probably damaging Het
D430041D05Rik G T 2: 104,038,428 (GRCm39) N1580K probably damaging Het
Dcdc5 A G 2: 106,181,910 (GRCm39) noncoding transcript Het
Ddx17 T C 15: 79,414,577 (GRCm39) D530G probably benign Het
Dhx9 A T 1: 153,341,441 (GRCm39) D601E probably benign Het
Dnah3 A G 7: 119,646,853 (GRCm39) Y1059H probably damaging Het
Dtx1 C A 5: 120,848,569 (GRCm39) probably benign Het
Egfr A G 11: 16,813,065 (GRCm39) S182G probably benign Het
Fads1 A G 19: 10,163,116 (GRCm39) N131S probably benign Het
Fam243 T A 16: 92,117,553 (GRCm39) Y245F probably damaging Het
Fancm C T 12: 65,165,125 (GRCm39) A1490V possibly damaging Het
Fsd2 C A 7: 81,209,339 (GRCm39) E168* probably null Het
Galnt2l T C 8: 123,568,687 (GRCm39) probably benign Het
Gm9772 A T 17: 22,226,099 (GRCm39) C62S probably damaging Het
H60c C T 10: 3,210,307 (GRCm39) A81T possibly damaging Het
Hira T G 16: 18,744,413 (GRCm39) S377A probably benign Het
Iffo1 T C 6: 125,122,877 (GRCm39) S220P possibly damaging Het
Itih4 A G 14: 30,614,610 (GRCm39) M491V probably benign Het
Khdrbs2 T C 1: 32,559,777 (GRCm39) R102G possibly damaging Het
Klhdc7a T G 4: 139,692,835 (GRCm39) Y704S possibly damaging Het
Klk1b21 G A 7: 43,754,923 (GRCm39) V73I probably benign Het
Krt42 G A 11: 100,160,435 (GRCm39) A88V probably benign Het
Krt42 C T 11: 100,160,436 (GRCm39) A88T probably benign Het
Limk1 G T 5: 134,686,364 (GRCm39) D580E probably benign Het
Lipk C T 19: 34,024,185 (GRCm39) P323S probably damaging Het
Lipo5 T A 19: 33,443,273 (GRCm39) probably benign Het
Llgl2 A G 11: 115,736,325 (GRCm39) D166G probably benign Het
Mapk8ip3 A T 17: 25,125,923 (GRCm39) N439K probably damaging Het
Mapkbp1 C T 2: 119,803,626 (GRCm39) R32W probably damaging Het
Med23 T A 10: 24,779,550 (GRCm39) probably benign Het
Mrgprb1 A T 7: 48,097,777 (GRCm39) M45K probably damaging Het
Mroh7 G A 4: 106,552,338 (GRCm39) probably benign Het
Mrpl27 G A 11: 94,544,659 (GRCm39) probably benign Het
Ms4a10 T A 19: 10,942,097 (GRCm39) T175S possibly damaging Het
Muc17 T C 5: 137,166,799 (GRCm39) H330R probably benign Het
Myo15a A T 11: 60,399,028 (GRCm39) I2787F probably damaging Het
Ndst1 A G 18: 60,846,277 (GRCm39) C11R possibly damaging Het
Obsl1 C A 1: 75,464,300 (GRCm39) G1669* probably null Het
Or5p56 A G 7: 107,589,605 (GRCm39) E11G probably benign Het
Or6c208 A T 10: 129,223,652 (GRCm39) D50V probably damaging Het
Or7e177 T C 9: 20,212,134 (GRCm39) Y214H probably benign Het
Pafah2 T A 4: 134,131,468 (GRCm39) I52N probably damaging Het
Pcsk6 A T 7: 65,693,283 (GRCm39) I693F possibly damaging Het
Pde4c G T 8: 71,199,262 (GRCm39) R228L probably benign Het
Pdzd8 T C 19: 59,288,904 (GRCm39) N832S probably benign Het
Plbd1 T A 6: 136,590,814 (GRCm39) M451L probably benign Het
Pramel14 G T 4: 143,719,851 (GRCm39) D171E probably benign Het
Prom1 T C 5: 44,194,965 (GRCm39) D260G probably damaging Het
Ranbp17 A G 11: 33,216,310 (GRCm39) S813P probably damaging Het
Scn10a T C 9: 119,520,544 (GRCm39) I119V probably benign Het
Sh3pxd2b A G 11: 32,365,967 (GRCm39) T353A probably damaging Het
Shq1 A T 6: 100,646,659 (GRCm39) probably null Het
Slc22a28 T A 19: 8,049,223 (GRCm39) H342L possibly damaging Het
Slco2b1 C T 7: 99,314,114 (GRCm39) E9K probably null Het
Specc1l T C 10: 75,082,118 (GRCm39) F505L probably damaging Het
Sptan1 G T 2: 29,870,215 (GRCm39) probably null Het
St6gal2 A G 17: 55,797,932 (GRCm39) probably benign Het
Taok2 T C 7: 126,479,313 (GRCm39) I73V probably benign Het
Tax1bp1 C T 6: 52,721,229 (GRCm39) T478I probably benign Het
Tph1 A T 7: 46,296,907 (GRCm39) Y429* probably null Het
Tprkb A T 6: 85,901,403 (GRCm39) R14W probably damaging Het
Trio A T 15: 27,753,890 (GRCm39) probably benign Het
Ttc23 T C 7: 67,316,902 (GRCm39) probably benign Het
Vmn1r211 T C 13: 23,036,415 (GRCm39) Y84C probably damaging Het
Vmn2r22 C G 6: 123,614,624 (GRCm39) G322A possibly damaging Het
Wdr74 A G 19: 8,717,776 (GRCm39) Q330R probably benign Het
Wdtc1 C A 4: 133,024,739 (GRCm39) S486I possibly damaging Het
Zbtb24 T C 10: 41,340,989 (GRCm39) V673A possibly damaging Het
Zfpm2 A T 15: 40,965,877 (GRCm39) R655S probably damaging Het
Zkscan5 A G 5: 145,157,798 (GRCm39) N694D probably benign Het
Other mutations in Tbc1d4
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00087:Tbc1d4 APN 14 101,845,548 (GRCm39) missense probably damaging 1.00
IGL00864:Tbc1d4 APN 14 101,682,002 (GRCm39) missense probably benign 0.23
IGL01065:Tbc1d4 APN 14 101,686,629 (GRCm39) splice site probably benign
IGL01144:Tbc1d4 APN 14 101,682,099 (GRCm39) missense probably damaging 0.99
IGL01153:Tbc1d4 APN 14 101,845,451 (GRCm39) missense possibly damaging 0.52
IGL01472:Tbc1d4 APN 14 101,727,300 (GRCm39) nonsense probably null
IGL02177:Tbc1d4 APN 14 101,692,375 (GRCm39) missense possibly damaging 0.90
IGL02259:Tbc1d4 APN 14 101,703,166 (GRCm39) missense probably damaging 1.00
IGL02938:Tbc1d4 APN 14 101,738,536 (GRCm39) missense probably damaging 1.00
IGL02975:Tbc1d4 APN 14 101,695,549 (GRCm39) missense probably damaging 1.00
R0396:Tbc1d4 UTSW 14 101,695,499 (GRCm39) splice site probably null
R0787:Tbc1d4 UTSW 14 101,686,645 (GRCm39) missense probably damaging 1.00
R0944:Tbc1d4 UTSW 14 101,716,656 (GRCm39) splice site probably benign
R1167:Tbc1d4 UTSW 14 101,845,455 (GRCm39) missense probably damaging 1.00
R1465:Tbc1d4 UTSW 14 101,685,124 (GRCm39) missense possibly damaging 0.87
R1465:Tbc1d4 UTSW 14 101,685,124 (GRCm39) missense possibly damaging 0.87
R1672:Tbc1d4 UTSW 14 101,712,651 (GRCm39) missense possibly damaging 0.92
R1762:Tbc1d4 UTSW 14 101,744,574 (GRCm39) missense possibly damaging 0.95
R2057:Tbc1d4 UTSW 14 101,714,591 (GRCm39) missense probably damaging 0.97
R2260:Tbc1d4 UTSW 14 101,731,847 (GRCm39) missense probably damaging 1.00
R2762:Tbc1d4 UTSW 14 101,731,797 (GRCm39) missense probably damaging 1.00
R3814:Tbc1d4 UTSW 14 101,696,191 (GRCm39) missense possibly damaging 0.94
R3983:Tbc1d4 UTSW 14 101,744,649 (GRCm39) missense probably benign 0.00
R4498:Tbc1d4 UTSW 14 101,845,772 (GRCm39) missense probably damaging 1.00
R4580:Tbc1d4 UTSW 14 101,696,219 (GRCm39) missense probably benign 0.00
R4664:Tbc1d4 UTSW 14 101,700,263 (GRCm39) intron probably benign
R4872:Tbc1d4 UTSW 14 101,682,144 (GRCm39) missense probably benign 0.06
R4940:Tbc1d4 UTSW 14 101,744,667 (GRCm39) missense probably benign 0.27
R4964:Tbc1d4 UTSW 14 101,695,610 (GRCm39) missense probably damaging 1.00
R4966:Tbc1d4 UTSW 14 101,695,610 (GRCm39) missense probably damaging 1.00
R5103:Tbc1d4 UTSW 14 101,696,318 (GRCm39) nonsense probably null
R5180:Tbc1d4 UTSW 14 101,745,008 (GRCm39) missense probably damaging 1.00
R5366:Tbc1d4 UTSW 14 101,845,412 (GRCm39) missense possibly damaging 0.67
R5673:Tbc1d4 UTSW 14 101,692,444 (GRCm39) missense probably damaging 1.00
R6057:Tbc1d4 UTSW 14 101,727,353 (GRCm39) missense probably damaging 0.99
R6180:Tbc1d4 UTSW 14 101,696,206 (GRCm39) missense probably benign 0.01
R6361:Tbc1d4 UTSW 14 101,744,610 (GRCm39) missense probably damaging 0.97
R6509:Tbc1d4 UTSW 14 101,845,754 (GRCm39) missense possibly damaging 0.92
R6791:Tbc1d4 UTSW 14 101,845,695 (GRCm39) missense probably damaging 0.98
R7001:Tbc1d4 UTSW 14 101,696,185 (GRCm39) missense probably benign 0.43
R7016:Tbc1d4 UTSW 14 101,724,877 (GRCm39) missense probably damaging 1.00
R7575:Tbc1d4 UTSW 14 101,685,025 (GRCm39) missense probably damaging 1.00
R7691:Tbc1d4 UTSW 14 101,745,077 (GRCm39) missense probably damaging 1.00
R7936:Tbc1d4 UTSW 14 101,703,190 (GRCm39) missense probably damaging 1.00
R7991:Tbc1d4 UTSW 14 101,845,715 (GRCm39) missense probably damaging 0.98
R8182:Tbc1d4 UTSW 14 101,744,990 (GRCm39) missense probably damaging 1.00
R8540:Tbc1d4 UTSW 14 101,845,712 (GRCm39) missense probably damaging 1.00
R9126:Tbc1d4 UTSW 14 101,724,952 (GRCm39) missense probably benign 0.01
R9282:Tbc1d4 UTSW 14 101,845,616 (GRCm39) missense possibly damaging 0.93
R9288:Tbc1d4 UTSW 14 101,692,308 (GRCm39) missense probably damaging 1.00
R9385:Tbc1d4 UTSW 14 101,700,356 (GRCm39) missense probably damaging 1.00
R9424:Tbc1d4 UTSW 14 101,703,096 (GRCm39) missense probably damaging 1.00
R9494:Tbc1d4 UTSW 14 101,845,895 (GRCm39) start codon destroyed probably null 0.90
R9655:Tbc1d4 UTSW 14 101,744,567 (GRCm39) missense probably damaging 1.00
R9658:Tbc1d4 UTSW 14 101,845,856 (GRCm39) missense probably damaging 0.98
R9712:Tbc1d4 UTSW 14 101,744,846 (GRCm39) missense probably benign
Z1088:Tbc1d4 UTSW 14 101,689,859 (GRCm39) missense probably damaging 1.00
Z1176:Tbc1d4 UTSW 14 101,744,523 (GRCm39) critical splice donor site probably null
Predicted Primers PCR Primer
(F):5'- GACAATGCCCAGAGCCCAGTTT -3'
(R):5'- GACGAGCAGCAAGAGTTCCGAT -3'

Sequencing Primer
(F):5'- gaaggaaggaaggaaggaagg -3'
(R):5'- CAAGAGTTCCGATCTCGGTG -3'
Posted On 2014-11-11