Incidental Mutation 'R2443:Mmp19'
| ID |
249878 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Mmp19
|
| Ensembl Gene |
ENSMUSG00000025355 |
| Gene Name |
matrix metallopeptidase 19 |
| Synonyms |
|
| MMRRC Submission |
040401-MU
|
| Accession Numbers |
|
| Essential gene? |
Possibly non essential
(E-score: 0.363)
|
| Stock # |
R2443 (G1)
|
| Quality Score |
225 |
|
Status
|
Not validated
|
| Chromosome |
10 |
| Chromosomal Location |
128626779-128636693 bp(+) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
A to G
at 128634725 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Glutamic Acid to Glycine
at position 447
(E447G)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000026411
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000026411]
[ENSMUST00000051011]
[ENSMUST00000139227]
[ENSMUST00000219404]
|
| AlphaFold |
Q9JHI0 |
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000026411
AA Change: E447G
PolyPhen 2
Score 0.456 (Sensitivity: 0.89; Specificity: 0.90)
|
| SMART Domains |
Protein: ENSMUSP00000026411
Gene: ENSMUSG00000025355
AA Change: E447G
| Domain | Start | End | E-Value | Type |
|---|
|
signal peptide
|
1 |
18 |
N/A |
INTRINSIC |
|
Pfam:PG_binding_1
|
26 |
81 |
6.7e-10 |
PFAM |
|
ZnMc
|
101 |
258 |
5.13e-43 |
SMART |
|
low complexity region
|
262 |
271 |
N/A |
INTRINSIC |
|
HX
|
293 |
335 |
8.97e-8 |
SMART |
|
HX
|
337 |
378 |
1e-5 |
SMART |
|
HX
|
380 |
427 |
1.87e-5 |
SMART |
|
HX
|
429 |
471 |
3.7e-9 |
SMART |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000051011
|
| SMART Domains |
Protein: ENSMUSP00000050451
Gene: ENSMUSG00000047090
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:DUF4203
|
43 |
240 |
2.4e-47 |
PFAM |
|
low complexity region
|
257 |
271 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000139227
|
| SMART Domains |
Protein: ENSMUSP00000118082
Gene: ENSMUSG00000047090
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:DUF4203
|
42 |
96 |
4.5e-20 |
PFAM |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000152966
|
| SMART Domains |
Protein: ENSMUSP00000117574
Gene: ENSMUSG00000047090
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:DUF4203
|
42 |
241 |
1.9e-56 |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000219404
AA Change: E375G
PolyPhen 2
Score 0.401 (Sensitivity: 0.89; Specificity: 0.89)
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000219535
|
| Coding Region Coverage |
- 1x: 99.1%
- 3x: 98.5%
- 10x: 97.0%
- 20x: 94.0%
|
| Validation Efficiency |
|
| MGI Phenotype |
FUNCTION: This gene encodes a member of the matrix metalloproteinase family of extracellular matrix-degrading enzymes that are involved in tissue remodeling, wound repair, progression of atherosclerosis and tumor invasion. The encoded preproprotein undergoes proteolytic processing to generate a mature, zinc-dependent endopeptidase enzyme. Mice lacking the encoded protein develop a diet-induced obesity due to adipocyte hypertophy, exhibit decreased susceptibility to chemical carcinogen-induced skin tumors and early onset of tumoral angiogenesis. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Feb 2016]
PHENOTYPE: Mice homozygous for one knock-out allele develop diet-induced obesity due to adipocyte hypertrophy and display decreased incidence of chemically-induced fibrosarcomas while another knock-out mutant shows a reduced inflammatory reaction to contact hypersensitivity and abnormal T cell differentiation. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 42 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Anapc13 |
C |
T |
9: 102,511,222 (GRCm39) |
P37S |
probably damaging |
Het |
| Asxl3 |
T |
A |
18: 22,544,596 (GRCm39) |
D39E |
probably benign |
Het |
| Cfap91 |
A |
G |
16: 38,123,094 (GRCm39) |
Y645H |
probably damaging |
Het |
| Clec4d |
G |
A |
6: 123,245,076 (GRCm39) |
V119M |
probably benign |
Het |
| Dennd11 |
T |
C |
6: 40,383,710 (GRCm39) |
D444G |
probably damaging |
Het |
| Dlx2 |
A |
G |
2: 71,376,349 (GRCm39) |
S130P |
probably benign |
Het |
| Dync2li1 |
C |
A |
17: 84,955,093 (GRCm39) |
Q251K |
probably benign |
Het |
| Edem1 |
A |
T |
6: 108,828,230 (GRCm39) |
K518N |
probably benign |
Het |
| Elapor1 |
A |
T |
3: 108,388,665 (GRCm39) |
N239K |
probably damaging |
Het |
| Fbln2 |
T |
C |
6: 91,236,693 (GRCm39) |
V736A |
probably damaging |
Het |
| Fga |
A |
G |
3: 82,935,848 (GRCm39) |
K25R |
probably benign |
Het |
| Hmcn1 |
C |
A |
1: 150,474,783 (GRCm39) |
R4701S |
probably benign |
Het |
| Ighv8-5 |
G |
A |
12: 115,031,440 (GRCm39) |
P33L |
probably damaging |
Het |
| Kcnip3 |
T |
A |
2: 127,301,983 (GRCm39) |
I194F |
probably damaging |
Het |
| Kif26b |
A |
C |
1: 178,742,579 (GRCm39) |
I892L |
probably damaging |
Het |
| Krt78 |
C |
T |
15: 101,855,033 (GRCm39) |
G926E |
probably damaging |
Het |
| Map1b |
T |
C |
13: 99,566,919 (GRCm39) |
Y1934C |
unknown |
Het |
| Masp1 |
A |
T |
16: 23,295,062 (GRCm39) |
Y400N |
probably damaging |
Het |
| Methig1 |
T |
C |
15: 100,251,092 (GRCm39) |
M1T |
probably null |
Het |
| Ms4a6d |
G |
A |
19: 11,567,557 (GRCm39) |
H115Y |
possibly damaging |
Het |
| Myo1e |
C |
T |
9: 70,234,454 (GRCm39) |
S269L |
probably benign |
Het |
| Myo7a |
G |
A |
7: 97,744,976 (GRCm39) |
T288I |
probably benign |
Het |
| Npy5r |
T |
A |
8: 67,133,942 (GRCm39) |
K284* |
probably null |
Het |
| Oas3 |
C |
A |
5: 120,915,553 (GRCm39) |
R46L |
probably benign |
Het |
| Or5l14 |
A |
T |
2: 87,793,209 (GRCm39) |
V9E |
possibly damaging |
Het |
| Pkd1l3 |
T |
A |
8: 110,350,447 (GRCm39) |
S431T |
probably benign |
Het |
| Pnpla2 |
T |
C |
7: 141,037,982 (GRCm39) |
V184A |
possibly damaging |
Het |
| Pomt2 |
C |
A |
12: 87,180,154 (GRCm39) |
K282N |
probably damaging |
Het |
| Psmd12 |
T |
A |
11: 107,386,563 (GRCm39) |
M378K |
probably damaging |
Het |
| Sla2 |
G |
A |
2: 156,717,862 (GRCm39) |
R137C |
probably damaging |
Het |
| Strn3 |
A |
T |
12: 51,674,618 (GRCm39) |
Y389N |
probably damaging |
Het |
| Tdrd1 |
C |
T |
19: 56,829,786 (GRCm39) |
A220V |
probably null |
Het |
| Tecpr2 |
T |
G |
12: 110,862,759 (GRCm39) |
L57R |
probably damaging |
Het |
| Tkfc |
A |
G |
19: 10,571,902 (GRCm39) |
L378P |
probably damaging |
Het |
| Tmprss2 |
T |
G |
16: 97,369,703 (GRCm39) |
D357A |
possibly damaging |
Het |
| Tollip |
C |
T |
7: 141,444,560 (GRCm39) |
W64* |
probably null |
Het |
| Vcan |
A |
G |
13: 89,852,794 (GRCm39) |
F722S |
probably damaging |
Het |
| Vcp |
A |
T |
4: 42,983,385 (GRCm39) |
N558K |
probably damaging |
Het |
| Vmn1r232 |
A |
G |
17: 21,133,646 (GRCm39) |
I318T |
probably damaging |
Het |
| Vmn1r33 |
A |
T |
6: 66,588,957 (GRCm39) |
I199K |
possibly damaging |
Het |
| Zfp61 |
A |
G |
7: 23,991,194 (GRCm39) |
V319A |
probably benign |
Het |
| Zfyve28 |
A |
G |
5: 34,374,238 (GRCm39) |
V592A |
possibly damaging |
Het |
|
| Other mutations in Mmp19 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL01462:Mmp19
|
APN |
10 |
128,634,011 (GRCm39) |
missense |
probably damaging |
0.99 |
|
IGL01654:Mmp19
|
APN |
10 |
128,634,389 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02009:Mmp19
|
APN |
10 |
128,634,356 (GRCm39) |
missense |
probably benign |
|
|
IGL02110:Mmp19
|
APN |
10 |
128,630,727 (GRCm39) |
missense |
probably damaging |
0.97 |
|
H8562:Mmp19
|
UTSW |
10 |
128,631,470 (GRCm39) |
missense |
probably benign |
|
|
I0000:Mmp19
|
UTSW |
10 |
128,634,329 (GRCm39) |
missense |
probably benign |
0.38 |
|
R0183:Mmp19
|
UTSW |
10 |
128,634,872 (GRCm39) |
missense |
possibly damaging |
0.49 |
|
R0388:Mmp19
|
UTSW |
10 |
128,634,752 (GRCm39) |
missense |
probably benign |
0.01 |
|
R1481:Mmp19
|
UTSW |
10 |
128,634,047 (GRCm39) |
missense |
possibly damaging |
0.82 |
|
R2073:Mmp19
|
UTSW |
10 |
128,630,848 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R2495:Mmp19
|
UTSW |
10 |
128,626,819 (GRCm39) |
utr 5 prime |
probably benign |
|
|
R4477:Mmp19
|
UTSW |
10 |
128,631,506 (GRCm39) |
missense |
probably benign |
0.01 |
|
R5293:Mmp19
|
UTSW |
10 |
128,626,970 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6567:Mmp19
|
UTSW |
10 |
128,632,275 (GRCm39) |
missense |
probably benign |
|
|
R6932:Mmp19
|
UTSW |
10 |
128,627,523 (GRCm39) |
missense |
probably benign |
0.16 |
|
R7338:Mmp19
|
UTSW |
10 |
128,634,952 (GRCm39) |
missense |
probably benign |
0.00 |
|
R7611:Mmp19
|
UTSW |
10 |
128,634,857 (GRCm39) |
missense |
probably benign |
|
|
R8515:Mmp19
|
UTSW |
10 |
128,631,471 (GRCm39) |
missense |
probably benign |
0.01 |
|
R8704:Mmp19
|
UTSW |
10 |
128,634,703 (GRCm39) |
missense |
probably benign |
0.06 |
|
R9417:Mmp19
|
UTSW |
10 |
128,630,523 (GRCm39) |
missense |
possibly damaging |
0.52 |
|
| Predicted Primers |
PCR Primer
(F):5'- TGGATCAGCTTCTGGAGTCC -3'
(R):5'- GGAATGTCCAAGGTTGAGCC -3'
Sequencing Primer
(F):5'- GATCAGCTTCTGGAGTCCCCTAAG -3'
(R):5'- ATGTCCAAGGTTGAGCCCATGG -3'
|
| Posted On |
2014-11-12 |
Incidental Mutation