Mutagenetix > Incidental Mutation

Incidental Mutation 'R2426:Slc20a1'

250194

Institutional Source

Beutler Lab

Gene Symbol

Slc20a1

Ensembl Gene

ENSMUSG00000027397

Gene Name

solute carrier family 20, member 1

Synonyms

PiT-1, Glvr1, Glvr-1

MMRRC Submission

040388-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R2426 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

129198764-129211616 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 129208230 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Phenylalanine to Serine at position 436 (F436S)

Ref Sequence

ENSEMBL: ENSMUSP00000105944 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000028880] [ENSMUST00000110315]

AlphaFold

Q61609

Predicted Effect

probably benign
Transcript: ENSMUST00000028880
AA Change: F436S

PolyPhen 2 Score 0.129 (Sensitivity: 0.93; Specificity: 0.86)

SMART Domains

Protein: ENSMUSP00000028880
Gene: ENSMUSG00000027397
AA Change: F436S

Domain	Start	End	E-Value	Type
Pfam:PHO4	43	667	1.8e-162	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000110315
AA Change: F436S

PolyPhen 2 Score 0.129 (Sensitivity: 0.93; Specificity: 0.86)

SMART Domains

Protein: ENSMUSP00000105944
Gene: ENSMUSG00000027397
AA Change: F436S

Domain	Start	End	E-Value	Type
Pfam:PHO4	43	667	1.3e-132	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000125714

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000127525

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000141285

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000144025

Coding Region Coverage

1x: 99.1%
3x: 98.5%
10x: 96.9%
20x: 93.8%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is a sodium-phosphate symporter that absorbs phosphate from interstitial fluid for use in cellular functions such as metabolism, signal transduction, and nucleic acid and lipid synthesis. The encoded protein is also a retroviral receptor, causing human cells to be susceptible to infection by gibbon ape leukemia virus, simian sarcoma-associated virus, feline leukemia virus subgroup B, and 10A1 murine leukemia virus.[provided by RefSeq, Mar 2011]
PHENOTYPE: Mice homozygous for a knock-out allele exhibit mid-gestation lethality associated with abnormal vitelline vasculature, growth retardation, and anemia. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 67 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
0610010F05Rik	T	A	11: 23,576,801 (GRCm38)	R190W	probably damaging	Het
Abca14	G	T	7: 120,283,223 (GRCm38)	V1203L	probably benign	Het
Adamtsl1	G	A	4: 86,156,788 (GRCm38)	V131I	probably benign	Het
Adgra3	A	T	5: 50,009,449 (GRCm38)	M187K	possibly damaging	Het
Agbl1	T	C	7: 76,421,902 (GRCm38)	V324A	probably damaging	Het
Ahnak	A	T	19: 9,002,851 (GRCm38)	I500F	possibly damaging	Het
Aldh1l1	A	G	6: 90,598,284 (GRCm38)	D851G	probably damaging	Het
Amot	T	C	X: 145,476,291 (GRCm38)	K460E	probably damaging	Het
Arhgef3	G	T	14: 27,384,181 (GRCm38)	E161*	probably null	Het
Atg9b	A	T	5: 24,386,994 (GRCm38)	I669N	probably damaging	Het
AY761184	T	G	8: 21,702,637 (GRCm38)	K114N	possibly damaging	Het
Ccdc83	A	G	7: 90,228,431 (GRCm38)	Y268H	probably damaging	Het
Cep170	A	G	1: 176,774,635 (GRCm38)	S302P	probably benign	Het
Cyp4a31	T	A	4: 115,571,016 (GRCm38)	M303K	probably damaging	Het
Cyp4v3	T	A	8: 45,317,776 (GRCm38)	Y231F	probably benign	Het
Dock3	A	T	9: 106,914,541 (GRCm38)	L1411Q	possibly damaging	Het
Dsg1a	T	A	18: 20,336,804 (GRCm38)	I629N	probably damaging	Het
Dst	A	T	1: 34,192,812 (GRCm38)	H2837L	probably benign	Het
Fam114a2	G	A	11: 57,493,080 (GRCm38)	P343L	probably benign	Het
Fbrs	A	G	7: 127,487,339 (GRCm38)		probably null	Het
Fbxl13	A	C	5: 21,522,137 (GRCm38)	D620E	probably damaging	Het
Frmd4a	T	A	2: 4,529,862 (GRCm38)	S164T	probably damaging	Het
Gdi2	T	G	13: 3,562,034 (GRCm38)	S330A	probably benign	Het
Gm5878	A	T	6: 85,118,631 (GRCm38)	M70K	probably benign	Het
H2-Q6	G	T	17: 35,424,937 (GRCm38)	A21S	probably benign	Het
Hfm1	A	T	5: 106,847,653 (GRCm38)		probably null	Het
Hnmt	C	T	2: 24,019,155 (GRCm38)	C82Y	probably benign	Het
Il1rl1	C	A	1: 40,446,619 (GRCm38)	A310D	probably damaging	Het
Ints1	A	T	5: 139,771,814 (GRCm38)		probably null	Het
Kcne4	C	A	1: 78,817,971 (GRCm38)	A112E	possibly damaging	Het
Krt32	T	C	11: 100,086,366 (GRCm38)	K236R	possibly damaging	Het
Maml2	T	C	9: 13,706,498 (GRCm38)	L380P	probably damaging	Het
Meis1	A	T	11: 18,988,356 (GRCm38)	D218E	possibly damaging	Het
Mon1b	G	A	8: 113,639,120 (GRCm38)	G360D	probably damaging	Het
Mpp4	A	G	1: 59,130,057 (GRCm38)	S383P	probably damaging	Het
Neb	A	G	2: 52,169,053 (GRCm38)		probably null	Het
Nlgn2	A	T	11: 69,827,086 (GRCm38)	I431N	probably damaging	Het
Nr2e1	A	G	10: 42,563,485 (GRCm38)	L134P	probably damaging	Het
Olfr329-ps	A	T	11: 58,543,094 (GRCm38)	Y127*	probably null	Het
Olfr371	T	C	8: 85,231,064 (GRCm38)	S190P	probably damaging	Het
Olfr777	T	C	10: 129,269,266 (GRCm38)	Q19R	probably benign	Het
Opcml	G	A	9: 28,903,367 (GRCm38)		probably null	Het
Pate2	A	T	9: 35,670,480 (GRCm38)		probably null	Het
Pgr	G	A	9: 8,900,717 (GRCm38)	V84M	probably damaging	Het
Pigu	A	T	2: 155,299,082 (GRCm38)	V296D	probably damaging	Het
Plcb2	G	A	2: 118,715,649 (GRCm38)	T555M	probably damaging	Het
Pld5	T	G	1: 175,963,976 (GRCm38)	D426A	probably benign	Het
Prdm2	G	T	4: 143,111,750 (GRCm38)	C1679*	probably null	Het
Psme2b	A	T	11: 48,946,063 (GRCm38)	V19D	probably benign	Het
Ptpn9	A	T	9: 57,027,428 (GRCm38)	N159Y	possibly damaging	Het
Sdc3	A	T	4: 130,818,803 (GRCm38)	T64S	unknown	Het
Serping1	T	G	2: 84,770,219 (GRCm38)	S260R	probably damaging	Het
Sntb1	A	T	15: 55,906,179 (GRCm38)	I138N	probably damaging	Het
Sorcs3	A	T	19: 48,722,925 (GRCm38)	Y643F	probably damaging	Het
Spink1	G	T	18: 43,735,222 (GRCm38)	S23*	probably null	Het
Stag1	T	C	9: 100,845,116 (GRCm38)		probably null	Het
Tnfaip8l1	G	A	17: 56,172,030 (GRCm38)	V107I	probably benign	Het
Tnik	A	G	3: 28,646,681 (GRCm38)	S907G	probably damaging	Het
Ttf1	T	A	2: 29,067,185 (GRCm38)	M489K	probably damaging	Het
Ugcg	C	T	4: 59,207,798 (GRCm38)	P46S	probably benign	Het
Usp54	G	A	14: 20,564,940 (GRCm38)	A811V	probably benign	Het
Xirp2	A	G	2: 67,514,471 (GRCm38)	N2352S	probably benign	Het
Zan	T	C	5: 137,388,992 (GRCm38)	Y4933C	unknown	Het
Zbtb8a	A	G	4: 129,360,219 (GRCm38)	S161P	probably benign	Het
Zkscan5	A	T	5: 145,220,940 (GRCm38)	I751L	probably benign	Het
Zscan4d	A	G	7: 11,165,095 (GRCm38)	F85S	probably damaging	Het
Zzef1	A	G	11: 72,915,265 (GRCm38)	M2647V	probably benign	Het

Other mutations in Slc20a1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01590:Slc20a1	APN	2	129,209,226 (GRCm38)	splice site	probably benign
IGL02563:Slc20a1	APN	2	129,207,684 (GRCm38)	missense	probably benign
R0037:Slc20a1	UTSW	2	129,210,772 (GRCm38)	missense	probably damaging	1.00
R0514:Slc20a1	UTSW	2	129,199,891 (GRCm38)	missense	probably damaging	1.00
R1221:Slc20a1	UTSW	2	129,208,404 (GRCm38)	missense	probably benign	0.44
R2099:Slc20a1	UTSW	2	129,207,838 (GRCm38)	missense	probably benign	0.00
R2122:Slc20a1	UTSW	2	129,199,819 (GRCm38)	missense	possibly damaging	0.86
R2261:Slc20a1	UTSW	2	129,206,474 (GRCm38)	missense	possibly damaging	0.85
R3428:Slc20a1	UTSW	2	129,200,282 (GRCm38)	missense	probably benign
R4712:Slc20a1	UTSW	2	129,199,691 (GRCm38)	splice site	probably benign
R4981:Slc20a1	UTSW	2	129,199,999 (GRCm38)	missense	probably damaging	1.00
R5213:Slc20a1	UTSW	2	129,200,509 (GRCm38)	missense	probably damaging	1.00
R5395:Slc20a1	UTSW	2	129,208,337 (GRCm38)	missense	probably damaging	1.00
R5506:Slc20a1	UTSW	2	129,210,819 (GRCm38)	missense	probably benign	0.00
R6255:Slc20a1	UTSW	2	129,208,004 (GRCm38)	missense	probably damaging	0.99
R6266:Slc20a1	UTSW	2	129,209,894 (GRCm38)	missense	possibly damaging	0.78
R7022:Slc20a1	UTSW	2	129,200,059 (GRCm38)	missense	probably damaging	0.99
R7091:Slc20a1	UTSW	2	129,208,272 (GRCm38)	missense	possibly damaging	0.85
R7175:Slc20a1	UTSW	2	129,210,742 (GRCm38)	missense	probably damaging	1.00
R7250:Slc20a1	UTSW	2	129,209,924 (GRCm38)	missense	possibly damaging	0.78
R7914:Slc20a1	UTSW	2	129,207,837 (GRCm38)	missense	probably benign	0.01
R7915:Slc20a1	UTSW	2	129,207,837 (GRCm38)	missense	probably benign	0.01
R7916:Slc20a1	UTSW	2	129,207,837 (GRCm38)	missense	probably benign	0.01
R7919:Slc20a1	UTSW	2	129,207,837 (GRCm38)	missense	probably benign	0.01
R8051:Slc20a1	UTSW	2	129,208,200 (GRCm38)	missense	possibly damaging	0.92
R8098:Slc20a1	UTSW	2	129,209,121 (GRCm38)	missense	probably damaging	1.00
R8181:Slc20a1	UTSW	2	129,209,127 (GRCm38)	missense	probably damaging	1.00
R8420:Slc20a1	UTSW	2	129,199,864 (GRCm38)	missense	probably damaging	1.00
R9124:Slc20a1	UTSW	2	129,209,222 (GRCm38)	missense	probably damaging	1.00
R9532:Slc20a1	UTSW	2	129,200,013 (GRCm38)	missense	probably damaging	1.00
X0067:Slc20a1	UTSW	2	129,199,888 (GRCm38)	missense	probably damaging	1.00
Z1176:Slc20a1	UTSW	2	129,204,100 (GRCm38)	missense	possibly damaging	0.94

Predicted Primers

PCR Primer
(F):5'- TCAACTCCAGTGGCCACTATC -3'
(R):5'- CATTCTTCAAGAGAGCCACTGC -3'

Sequencing Primer
(F):5'- CCAGTGGCCACTATCAGTATC -3'
(R):5'- TCTGTCACCCAGGCCCATC -3'

Posted On

2014-11-12