Mutagenetix > Incidental Mutation

Incidental Mutation 'R2426:Nlgn2'

250239

Institutional Source

Beutler Lab

Gene Symbol

Nlgn2

Ensembl Gene

ENSMUSG00000051790

Gene Name

neuroligin 2

Synonyms

NL2

MMRRC Submission

040388-MU

Accession Numbers

Is this an essential gene?

Non essential (E-score: 0.000) question?

Stock #

R2426 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

69823122-69837784 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 69827086 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Isoleucine to Asparagine at position 431 (I431N)

Ref Sequence

ENSEMBL: ENSMUSP00000104274 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000045771] [ENSMUST00000056484] [ENSMUST00000108634]

AlphaFold

Q69ZK9

Predicted Effect

probably benign
Transcript: ENSMUST00000045771

SMART Domains

Protein: ENSMUSP00000037500
Gene: ENSMUSG00000041165

Domain	Start	End	E-Value	Type
Pfam:Spem1	12	196	3.7e-23	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000056484
AA Change: I431N

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000053097
Gene: ENSMUSG00000051790
AA Change: I431N

Domain	Start	End	E-Value	Type
Pfam:COesterase	31	601	1.6e-199	PFAM
Pfam:Abhydrolase_3	180	372	4.8e-9	PFAM
low complexity region	630	652	N/A	INTRINSIC
transmembrane domain	678	700	N/A	INTRINSIC
low complexity region	702	712	N/A	INTRINSIC
low complexity region	713	731	N/A	INTRINSIC
low complexity region	782	823	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000108634
AA Change: I431N

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000104274
Gene: ENSMUSG00000051790
AA Change: I431N

Domain	Start	End	E-Value	Type
Pfam:COesterase	30	601	2e-186	PFAM
Pfam:Abhydrolase_3	180	327	3.3e-9	PFAM
low complexity region	630	652	N/A	INTRINSIC
transmembrane domain	678	700	N/A	INTRINSIC
low complexity region	702	712	N/A	INTRINSIC
low complexity region	713	731	N/A	INTRINSIC
low complexity region	782	823	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000139893

SMART Domains

Protein: ENSMUSP00000120428
Gene: ENSMUSG00000051790

Domain	Start	End	E-Value	Type
Pfam:COesterase	1	262	9.3e-120	PFAM
Pfam:Abhydrolase_3	104	250	2e-9	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000140477

Coding Region Coverage

1x: 99.1%
3x: 98.5%
10x: 96.9%
20x: 93.8%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of a family of neuronal cell surface proteins. Members of this family may act as splice site-specific ligands for beta-neurexins and may be involved in the formation and remodeling of central nervous system synapses. [provided by RefSeq, Jul 2008]
PHENOTYPE: Mice homozygous for a conditional ready allele are viable and fertile. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 67 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
0610010F05Rik	T	A	11: 23,576,801	R190W	probably damaging	Het
Abca14	G	T	7: 120,283,223	V1203L	probably benign	Het
Adamtsl1	G	A	4: 86,156,788	V131I	probably benign	Het
Adgra3	A	T	5: 50,009,449	M187K	possibly damaging	Het
Agbl1	T	C	7: 76,421,902	V324A	probably damaging	Het
Ahnak	A	T	19: 9,002,851	I500F	possibly damaging	Het
Aldh1l1	A	G	6: 90,598,284	D851G	probably damaging	Het
Amot	T	C	X: 145,476,291	K460E	probably damaging	Het
Arhgef3	G	T	14: 27,384,181	E161*	probably null	Het
Atg9b	A	T	5: 24,386,994	I669N	probably damaging	Het
AY761184	T	G	8: 21,702,637	K114N	possibly damaging	Het
Ccdc83	A	G	7: 90,228,431	Y268H	probably damaging	Het
Cep170	A	G	1: 176,774,635	S302P	probably benign	Het
Cyp4a31	T	A	4: 115,571,016	M303K	probably damaging	Het
Cyp4v3	T	A	8: 45,317,776	Y231F	probably benign	Het
Dock3	A	T	9: 106,914,541	L1411Q	possibly damaging	Het
Dsg1a	T	A	18: 20,336,804	I629N	probably damaging	Het
Dst	A	T	1: 34,192,812	H2837L	probably benign	Het
Fam114a2	G	A	11: 57,493,080	P343L	probably benign	Het
Fbrs	A	G	7: 127,487,339		probably null	Het
Fbxl13	A	C	5: 21,522,137	D620E	probably damaging	Het
Frmd4a	T	A	2: 4,529,862	S164T	probably damaging	Het
Gdi2	T	G	13: 3,562,034	S330A	probably benign	Het
Gm5878	A	T	6: 85,118,631	M70K	probably benign	Het
H2-Q6	G	T	17: 35,424,937	A21S	probably benign	Het
Hfm1	A	T	5: 106,847,653		probably null	Het
Hnmt	C	T	2: 24,019,155	C82Y	probably benign	Het
Il1rl1	C	A	1: 40,446,619	A310D	probably damaging	Het
Ints1	A	T	5: 139,771,814		probably null	Het
Kcne4	C	A	1: 78,817,971	A112E	possibly damaging	Het
Krt32	T	C	11: 100,086,366	K236R	possibly damaging	Het
Maml2	T	C	9: 13,706,498	L380P	probably damaging	Het
Meis1	A	T	11: 18,988,356	D218E	possibly damaging	Het
Mon1b	G	A	8: 113,639,120	G360D	probably damaging	Het
Mpp4	A	G	1: 59,130,057	S383P	probably damaging	Het
Neb	A	G	2: 52,169,053		probably null	Het
Nr2e1	A	G	10: 42,563,485	L134P	probably damaging	Het
Olfr329-ps	A	T	11: 58,543,094	Y127*	probably null	Het
Olfr371	T	C	8: 85,231,064	S190P	probably damaging	Het
Olfr777	T	C	10: 129,269,266	Q19R	probably benign	Het
Opcml	G	A	9: 28,903,367		probably null	Het
Pate2	A	T	9: 35,670,480		probably null	Het
Pgr	G	A	9: 8,900,717	V84M	probably damaging	Het
Pigu	A	T	2: 155,299,082	V296D	probably damaging	Het
Plcb2	G	A	2: 118,715,649	T555M	probably damaging	Het
Pld5	T	G	1: 175,963,976	D426A	probably benign	Het
Prdm2	G	T	4: 143,111,750	C1679*	probably null	Het
Psme2b	A	T	11: 48,946,063	V19D	probably benign	Het
Ptpn9	A	T	9: 57,027,428	N159Y	possibly damaging	Het
Sdc3	A	T	4: 130,818,803	T64S	unknown	Het
Serping1	T	G	2: 84,770,219	S260R	probably damaging	Het
Slc20a1	T	C	2: 129,208,230	F436S	probably benign	Het
Sntb1	A	T	15: 55,906,179	I138N	probably damaging	Het
Sorcs3	A	T	19: 48,722,925	Y643F	probably damaging	Het
Spink1	G	T	18: 43,735,222	S23*	probably null	Het
Stag1	T	C	9: 100,845,116		probably null	Het
Tnfaip8l1	G	A	17: 56,172,030	V107I	probably benign	Het
Tnik	A	G	3: 28,646,681	S907G	probably damaging	Het
Ttf1	T	A	2: 29,067,185	M489K	probably damaging	Het
Ugcg	C	T	4: 59,207,798	P46S	probably benign	Het
Usp54	G	A	14: 20,564,940	A811V	probably benign	Het
Xirp2	A	G	2: 67,514,471	N2352S	probably benign	Het
Zan	T	C	5: 137,388,992	Y4933C	unknown	Het
Zbtb8a	A	G	4: 129,360,219	S161P	probably benign	Het
Zkscan5	A	T	5: 145,220,940	I751L	probably benign	Het
Zscan4d	A	G	7: 11,165,095	F85S	probably damaging	Het
Zzef1	A	G	11: 72,915,265	M2647V	probably benign	Het

Other mutations in Nlgn2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01845:Nlgn2	APN	11	69825849	missense	possibly damaging	0.78
IGL02649:Nlgn2	APN	11	69825802	missense	probably benign	0.04
IGL02887:Nlgn2	APN	11	69827254	missense	probably benign	0.24
IGL02904:Nlgn2	APN	11	69825840	missense	possibly damaging	0.91
P0040:Nlgn2	UTSW	11	69825730	missense	probably benign	0.01
R0800:Nlgn2	UTSW	11	69825997	missense	possibly damaging	0.92
R1901:Nlgn2	UTSW	11	69825900	missense	probably damaging	1.00
R1960:Nlgn2	UTSW	11	69827310	missense	probably damaging	1.00
R1997:Nlgn2	UTSW	11	69828050	missense	probably damaging	1.00
R2020:Nlgn2	UTSW	11	69828441	missense	probably damaging	1.00
R3768:Nlgn2	UTSW	11	69828404	missense	possibly damaging	0.95
R4584:Nlgn2	UTSW	11	69834278	missense	possibly damaging	0.48
R4609:Nlgn2	UTSW	11	69834086	missense	probably damaging	0.99
R5028:Nlgn2	UTSW	11	69827737	missense	probably benign	0.11
R5141:Nlgn2	UTSW	11	69825390	missense	probably damaging	1.00
R5149:Nlgn2	UTSW	11	69825390	missense	probably damaging	1.00
R5150:Nlgn2	UTSW	11	69825390	missense	probably damaging	1.00
R5458:Nlgn2	UTSW	11	69827900	missense	possibly damaging	0.87
R5930:Nlgn2	UTSW	11	69834149	missense	probably damaging	1.00
R6823:Nlgn2	UTSW	11	69825924	missense	probably damaging	1.00
R7096:Nlgn2	UTSW	11	69825690	missense	probably damaging	1.00
R7310:Nlgn2	UTSW	11	69830583	missense	possibly damaging	0.64
R7318:Nlgn2	UTSW	11	69825969	missense	probably damaging	1.00
R7643:Nlgn2	UTSW	11	69827885	missense	probably damaging	1.00
R7912:Nlgn2	UTSW	11	69825934	missense	probably damaging	1.00
R8679:Nlgn2	UTSW	11	69825483	missense	probably benign	0.00
R8870:Nlgn2	UTSW	11	69825471	missense	possibly damaging	0.78
R8932:Nlgn2	UTSW	11	69828168	missense	probably damaging	1.00
R9232:Nlgn2	UTSW	11	69828029	missense	probably damaging	1.00
R9402:Nlgn2	UTSW	11	69828107	missense
Z1186:Nlgn2	UTSW	11	69828394	missense	possibly damaging	0.57
Z1187:Nlgn2	UTSW	11	69828394	missense	possibly damaging	0.57
Z1188:Nlgn2	UTSW	11	69828394	missense	possibly damaging	0.57
Z1189:Nlgn2	UTSW	11	69828394	missense	possibly damaging	0.57
Z1190:Nlgn2	UTSW	11	69828394	missense	possibly damaging	0.57
Z1191:Nlgn2	UTSW	11	69828394	missense	possibly damaging	0.57
Z1192:Nlgn2	UTSW	11	69828394	missense	possibly damaging	0.57

Predicted Primers

PCR Primer
(F):5'- CGCTGAGCATGACATCGTTC -3'
(R):5'- CAACTACGACATGCTCATTGG -3'

Sequencing Primer
(F):5'- CATGACATCGTTCTTGGAGAAG -3'
(R):5'- ACGACATGCTCATTGGTGTCAAC -3'

Posted On

2014-11-12