Mutagenetix > Incidental Mutation

Incidental Mutation 'R1463:Galnt7'

250587

Institutional Source

Beutler Lab

Gene Symbol

Galnt7

Ensembl Gene

ENSMUSG00000031608

Gene Name

polypeptide N-acetylgalactosaminyltransferase 7

Synonyms

ppGaNTase-T7

MMRRC Submission

039517-MU

Accession Numbers

Essential gene?

Probably essential (E-score: 0.828) question?

Stock #

R1463 (G1)

Quality Score

Status

Validated

Chromosome

Chromosomal Location

57976862-58106066 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 58105892 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Methionine to Leucine at position 41 (M41L)

Ref Sequence

ENSEMBL: ENSMUSP00000105945 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000034021] [ENSMUST00000110316]

AlphaFold

Q80VA0

Predicted Effect

probably benign
Transcript: ENSMUST00000034021
AA Change: M41L

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000034021
Gene: ENSMUSG00000031608
AA Change: M41L

Domain	Start	End	E-Value	Type
transmembrane domain	7	29	N/A	INTRINSIC
low complexity region	48	62	N/A	INTRINSIC
low complexity region	136	152	N/A	INTRINSIC
Pfam:Glycos_transf_2	210	399	3e-28	PFAM
Pfam:Glyco_tranf_2_2	210	490	2e-7	PFAM
Pfam:Glyco_transf_7C	375	445	1.8e-8	PFAM
RICIN	531	652	3.39e-20	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000110316
AA Change: M41L

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000105945
Gene: ENSMUSG00000031608
AA Change: M41L

Domain	Start	End	E-Value	Type
transmembrane domain	7	29	N/A	INTRINSIC
low complexity region	48	62	N/A	INTRINSIC
low complexity region	136	152	N/A	INTRINSIC
Pfam:Glycos_transf_2	210	399	8.2e-27	PFAM
Pfam:Glyco_tranf_2_2	210	490	1.3e-7	PFAM
Pfam:Glyco_transf_7C	369	445	9.3e-9	PFAM
RICIN	531	652	3.39e-20	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000156907

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000210975

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000211284

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000211700

Meta Mutation Damage Score

0.0722

Coding Region Coverage

1x: 99.0%
3x: 98.2%
10x: 96.0%
20x: 91.6%

Validation Efficiency

97% (97/100)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes GalNAc transferase 7, a member of the GalNAc-transferase family. The enzyme encoded by this gene controls the initiation step of mucin-type O-linked protein glycosylation and transfer of N-acetylgalactosamine to serine and threonine amino acid residues. This enzyme is a type II transmembrane protein and shares common sequence motifs with other family members. Unlike other family members, this enzyme shows exclusive specificity for partially GalNAc-glycosylated acceptor substrates and shows no activity with non-glycosylated peptides. This protein may function as a follow-up enzyme in the initiation step of O-glycosylation. [provided by RefSeq, Jul 2008]

Allele List at MGI

Other mutations in this stock

Total: 100 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca5	A	T	11: 110,205,384 (GRCm39)	I299N	probably damaging	Het
Abcc8	T	C	7: 45,803,936 (GRCm39)	T413A	probably benign	Het
Actc1	G	A	2: 113,880,010 (GRCm39)	S201F	probably damaging	Het
Adam30	G	A	3: 98,069,841 (GRCm39)	C558Y	probably damaging	Het
Adcy4	T	A	14: 56,016,396 (GRCm39)	I352F	probably damaging	Het
Adgrl4	A	T	3: 151,216,233 (GRCm39)	D472V	probably damaging	Het
Afap1l2	T	A	19: 56,918,583 (GRCm39)	M117L	probably benign	Het
AI597479	T	C	1: 43,152,389 (GRCm39)	V229A	probably damaging	Het
Ascc1	T	C	10: 59,898,338 (GRCm39)	V267A	probably benign	Het
Asxl3	A	G	18: 22,649,810 (GRCm39)	S600G	possibly damaging	Het
Atg14	T	C	14: 47,786,451 (GRCm39)	I268V	probably benign	Het
Bcas1	C	T	2: 170,260,584 (GRCm39)	V32I	probably benign	Het
Cacna1c	G	T	6: 118,570,955 (GRCm39)	D2106E	probably benign	Het
Cacna1i	A	G	15: 80,263,255 (GRCm39)	H1440R	possibly damaging	Het
Catsper2	G	A	2: 121,236,927 (GRCm39)	T240M	probably damaging	Het
Ccn4	T	A	15: 66,791,120 (GRCm39)	N307K	possibly damaging	Het
Cd163	A	G	6: 124,288,406 (GRCm39)	E279G	probably damaging	Het
Cdx2	C	T	5: 147,243,470 (GRCm39)	S108N	probably benign	Het
Cenpf	A	T	1: 189,386,936 (GRCm39)	N1781K	probably damaging	Het
Cgref1	T	A	5: 31,093,338 (GRCm39)		probably benign	Het
Clcn4	C	T	7: 7,299,763 (GRCm39)	W22*	probably null	Het
Cntn2	A	G	1: 132,448,875 (GRCm39)		probably null	Het
Cntn5	C	T	9: 9,673,801 (GRCm39)		probably null	Het
Cpeb3	A	G	19: 37,116,500 (GRCm39)	M377T	probably benign	Het
Cryge	T	A	1: 65,087,997 (GRCm39)	R135*	probably null	Het
Ctdsp2	C	A	10: 126,829,790 (GRCm39)		probably benign	Het
Ctsll3	G	A	13: 60,949,089 (GRCm39)		probably benign	Het
Cuzd1	C	A	7: 130,918,371 (GRCm39)	G189C	probably damaging	Het
Dmbt1	T	A	7: 130,711,366 (GRCm39)		probably null	Het
Dnai4	T	A	4: 102,944,615 (GRCm39)	L245F	possibly damaging	Het
Dnajc13	A	T	9: 104,056,139 (GRCm39)	S1587R	probably damaging	Het
Dock4	GCTCAGTGTATC	GC	12: 40,866,324 (GRCm39)		probably null	Het
Dock6	T	C	9: 21,743,202 (GRCm39)	H701R	probably damaging	Het
Edem3	A	G	1: 151,683,261 (GRCm39)	T646A	possibly damaging	Het
Esrra	A	C	19: 6,889,823 (GRCm39)	D160E	probably benign	Het
Fbn2	T	C	18: 58,143,452 (GRCm39)	T2868A	probably benign	Het
Gbf1	T	C	19: 46,259,984 (GRCm39)		probably benign	Het
Glyat	A	G	19: 12,625,467 (GRCm39)	N63S	probably damaging	Het
Gm9376	A	T	14: 118,504,894 (GRCm39)	M109L	probably benign	Het
H2-M10.3	A	G	17: 36,677,612 (GRCm39)	V222A	probably damaging	Het
Ifna12	T	G	4: 88,521,193 (GRCm39)	D118A	possibly damaging	Het
Inpp5j	T	C	11: 3,451,147 (GRCm39)	M501V	probably benign	Het
Itpr3	C	T	17: 27,336,128 (GRCm39)		probably benign	Het
Ivns1abp	A	G	1: 151,237,291 (GRCm39)	N527S	probably benign	Het
Kif13a	T	C	13: 47,083,088 (GRCm39)	T4A	possibly damaging	Het
Kif3b	T	C	2: 153,172,073 (GRCm39)	*748Q	probably null	Het
Klf8	C	T	X: 152,167,677 (GRCm39)	Q241*	probably null	Het
Kras	A	T	6: 145,170,787 (GRCm39)		probably benign	Het
Lamc3	C	A	2: 31,777,423 (GRCm39)	T23K	probably benign	Het
Lrrc74b	T	A	16: 17,377,737 (GRCm39)	H47L	probably benign	Het
Ly75	A	G	2: 60,199,101 (GRCm39)		probably null	Het
Map3k21	G	A	8: 126,668,876 (GRCm39)	G821S	probably benign	Het
Mettl14	A	G	3: 123,167,722 (GRCm39)		probably benign	Het
Mettl5	T	C	2: 69,715,590 (GRCm39)		probably benign	Het
Mier3	A	G	13: 111,848,289 (GRCm39)	D301G	probably damaging	Het
Mipep	T	C	14: 61,025,595 (GRCm39)		probably benign	Het
Mmp21	T	C	7: 133,277,588 (GRCm39)		probably null	Het
Msh4	A	G	3: 153,563,207 (GRCm39)	L723P	probably damaging	Het
Muc5b	T	C	7: 141,412,817 (GRCm39)	V1921A	unknown	Het
Myo1e	G	A	9: 70,246,038 (GRCm39)	E410K	possibly damaging	Het
Nav2	T	G	7: 49,185,710 (GRCm39)	I951S	probably damaging	Het
Npc1	G	A	18: 12,324,887 (GRCm39)	T1202I	probably damaging	Het
Or10j3	A	G	1: 173,030,934 (GRCm39)	K4E	probably benign	Het
Or2ab1	A	G	11: 58,488,947 (GRCm39)	R242G	probably damaging	Het
Or5a3	C	T	19: 12,400,252 (GRCm39)	T193I	probably benign	Het
Pacc1	T	C	1: 191,060,486 (GRCm39)		probably benign	Het
Patl2	C	T	2: 121,954,216 (GRCm39)	V452M	probably benign	Het
Pcdh18	A	G	3: 49,709,854 (GRCm39)	V487A	probably damaging	Het
Pdzph1	C	T	17: 59,239,440 (GRCm39)	A963T	probably damaging	Het
Pkd1l1	C	T	11: 8,866,302 (GRCm39)	V518M	probably damaging	Het
Plcd3	A	G	11: 102,969,199 (GRCm39)	F256S	probably damaging	Het
Proc	T	C	18: 32,266,491 (GRCm39)	D112G	possibly damaging	Het
Ptges2	T	A	2: 32,290,874 (GRCm39)		probably null	Het
Pth2r	A	T	1: 65,402,436 (GRCm39)	R312W	probably damaging	Het
Pttg1ip2	C	A	5: 5,502,073 (GRCm39)		probably benign	Het
Rbbp6	C	T	7: 122,591,676 (GRCm39)	H546Y	possibly damaging	Het
Retreg2	A	G	1: 75,123,164 (GRCm39)	E364G	probably damaging	Het
Rxrb	G	A	17: 34,253,134 (GRCm39)	C185Y	probably damaging	Het
Septin2	T	A	1: 93,427,037 (GRCm39)	N133K	possibly damaging	Het
Serpina3b	T	A	12: 104,104,969 (GRCm39)	S382T	probably benign	Het
Serpinb9e	T	C	13: 33,439,099 (GRCm39)	F175S	probably benign	Het
Slc19a2	C	T	1: 164,084,766 (GRCm39)	H219Y	probably damaging	Het
Slfn9	A	T	11: 82,872,524 (GRCm39)	D737E	possibly damaging	Het
Snx31	T	C	15: 36,539,444 (GRCm39)	E144G	probably null	Het
Sp2	A	G	11: 96,854,282 (GRCm39)		probably benign	Het
Spag9	C	T	11: 94,007,663 (GRCm39)	L1117F	probably damaging	Het
Spata31e2	G	T	1: 26,721,222 (GRCm39)	Y1319*	probably null	Het
Syndig1l	A	T	12: 84,727,137 (GRCm39)		probably benign	Het
Sypl1	A	T	12: 33,024,332 (GRCm39)		probably benign	Het
Tmem169	T	C	1: 72,339,855 (GRCm39)	M95T	probably benign	Het
Tnfrsf17	A	G	16: 11,133,066 (GRCm39)	Y48C	possibly damaging	Het
Ttn	A	T	2: 76,657,859 (GRCm39)		probably benign	Het
Uap1	G	C	1: 169,977,952 (GRCm39)	H366Q	probably benign	Het
Ulbp1	A	G	10: 7,396,557 (GRCm39)		probably benign	Het
Urb2	T	C	8: 124,757,647 (GRCm39)	V1118A	probably benign	Het
Usp54	T	C	14: 20,600,258 (GRCm39)	N1493S	probably benign	Het
Vmn1r129	C	A	7: 21,094,655 (GRCm39)	V188F	probably benign	Het
Vmn1r226	A	T	17: 20,907,994 (GRCm39)	L75F	probably benign	Het
Yes1	T	A	5: 32,809,046 (GRCm39)	S137R	probably benign	Het
Zfp804b	A	G	5: 7,229,372 (GRCm39)		probably benign	Het

Other mutations in Galnt7

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00157:Galnt7	APN	8	57,993,073 (GRCm39)	missense	probably damaging	1.00
IGL00538:Galnt7	APN	8	58,005,556 (GRCm39)	missense	possibly damaging	0.95
IGL00826:Galnt7	APN	8	57,993,105 (GRCm39)	nonsense	probably null
IGL00951:Galnt7	APN	8	58,036,858 (GRCm39)	missense	probably damaging	0.96
IGL01662:Galnt7	APN	8	57,984,769 (GRCm39)	splice site	probably benign
IGL02280:Galnt7	APN	8	57,989,824 (GRCm39)	missense	probably damaging	1.00
IGL02832:Galnt7	APN	8	58,005,531 (GRCm39)	missense	probably damaging	1.00
IGL02936:Galnt7	APN	8	58,037,248 (GRCm39)	missense	probably benign
IGL03083:Galnt7	APN	8	57,979,223 (GRCm39)	missense	probably damaging	0.98
IGL03387:Galnt7	APN	8	57,979,212 (GRCm39)	missense	probably benign	0.01
R0400:Galnt7	UTSW	8	58,037,023 (GRCm39)	missense	probably damaging	0.99
R0553:Galnt7	UTSW	8	58,005,464 (GRCm39)	splice site	probably benign
R1487:Galnt7	UTSW	8	57,993,073 (GRCm39)	missense	probably damaging	1.00
R1791:Galnt7	UTSW	8	57,995,564 (GRCm39)	missense	probably benign	0.05
R1817:Galnt7	UTSW	8	57,991,212 (GRCm39)	missense	probably damaging	1.00
R1962:Galnt7	UTSW	8	57,985,748 (GRCm39)	missense	probably benign	0.13
R3855:Galnt7	UTSW	8	57,985,658 (GRCm39)	splice site	probably benign
R3856:Galnt7	UTSW	8	57,985,658 (GRCm39)	splice site	probably benign
R4232:Galnt7	UTSW	8	58,106,000 (GRCm39)	missense	probably benign
R4396:Galnt7	UTSW	8	57,991,215 (GRCm39)	missense	probably damaging	1.00
R4426:Galnt7	UTSW	8	58,005,606 (GRCm39)	nonsense	probably null
R4610:Galnt7	UTSW	8	57,998,803 (GRCm39)	missense	probably damaging	0.99
R4745:Galnt7	UTSW	8	57,995,761 (GRCm39)	intron	probably benign
R4794:Galnt7	UTSW	8	57,998,397 (GRCm39)	missense	probably damaging	1.00
R5014:Galnt7	UTSW	8	57,998,414 (GRCm39)	missense	probably damaging	1.00
R5177:Galnt7	UTSW	8	58,037,061 (GRCm39)	missense	possibly damaging	0.87
R5682:Galnt7	UTSW	8	58,036,967 (GRCm39)	nonsense	probably null
R6122:Galnt7	UTSW	8	57,979,200 (GRCm39)	missense	probably damaging	0.99
R6276:Galnt7	UTSW	8	57,989,612 (GRCm39)	splice site	probably null
R6684:Galnt7	UTSW	8	57,991,143 (GRCm39)	missense	probably benign	0.16
R6752:Galnt7	UTSW	8	58,105,985 (GRCm39)	missense	probably damaging	1.00
R7464:Galnt7	UTSW	8	58,037,054 (GRCm39)	missense	possibly damaging	0.95
R7491:Galnt7	UTSW	8	58,005,552 (GRCm39)	missense	probably damaging	0.97
R7547:Galnt7	UTSW	8	58,036,996 (GRCm39)	missense	possibly damaging	0.48
R8093:Galnt7	UTSW	8	57,985,739 (GRCm39)	missense	probably benign	0.00
R8221:Galnt7	UTSW	8	58,005,600 (GRCm39)	missense	possibly damaging	0.93
R8248:Galnt7	UTSW	8	57,991,222 (GRCm39)	missense	probably benign	0.34
R8402:Galnt7	UTSW	8	57,995,953 (GRCm39)	missense	probably damaging	0.98
R8779:Galnt7	UTSW	8	58,037,245 (GRCm39)	missense	probably benign
R8894:Galnt7	UTSW	8	57,979,176 (GRCm39)	nonsense	probably null
R8974:Galnt7	UTSW	8	58,105,934 (GRCm39)	missense
R9106:Galnt7	UTSW	8	57,985,729 (GRCm39)	missense	probably damaging	1.00
R9297:Galnt7	UTSW	8	57,995,555 (GRCm39)	missense	probably damaging	0.98
X0050:Galnt7	UTSW	8	58,005,478 (GRCm39)	frame shift	probably null
X0062:Galnt7	UTSW	8	58,036,942 (GRCm39)	missense	probably benign	0.04

Predicted Primers

PCR Primer
(F):5'- AGCAGTAGCGCGGGTGACGG -3'
(R):5'- GTGCGGCAGAGCAGTGCAGA -3'

Sequencing Primer
(F):5'- tgacggcgctgaacccggg -3'
(R):5'- ggggggggaaggaggag -3'

Posted On

2014-11-14