Mutagenetix > Incidental Mutation

Incidental Mutation 'R2679:Rtn4rl1'

250789

Institutional Source

Beutler Lab

Gene Symbol

Rtn4rl1

Ensembl Gene

ENSMUSG00000045287

Gene Name

reticulon 4 receptor-like 1

Synonyms

Ngr3, Ngrl2, Ngrh2

MMRRC Submission

040432-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.145) question?

Stock #

R2679 (G1)

Quality Score

219

Status

Validated

Chromosome

Chromosomal Location

75084819-75158595 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 75156552 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Glutamic Acid to Valine at position 328 (E328V)

Ref Sequence

ENSEMBL: ENSMUSP00000099572 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000102514]

AlphaFold

Q8K0S5

Predicted Effect

probably benign
Transcript: ENSMUST00000102514
AA Change: E328V

PolyPhen 2 Score 0.210 (Sensitivity: 0.92; Specificity: 0.88)

SMART Domains

Protein: ENSMUSP00000099572
Gene: ENSMUSG00000045287
AA Change: E328V

Domain	Start	End	E-Value	Type
LRRNT	24	58	2.74e-2	SMART
LRR	76	98	5.57e1	SMART
LRR	99	123	1.73e0	SMART
LRR	124	147	2.14e0	SMART
LRR_TYP	148	171	1.1e-2	SMART
LRR_TYP	172	195	6.88e-4	SMART
LRR	196	219	2.49e-1	SMART
LRR	220	243	5.72e0	SMART
LRRCT	255	305	8.21e-2	SMART

Meta Mutation Damage Score

0.0619

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.3%
20x: 95.0%

Validation Efficiency

97% (67/69)

MGI Phenotype

PHENOTYPE: Mice homozygous for disruptions in this gene display fatty change in the liver, bile duct lesions in females and hepatocytes with enlarged vacuoles and nuclei in the male. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 70 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Asic2	A	G	11: 81,042,780 (GRCm39)	V171A	probably benign	Het
Atf7ip	A	T	6: 136,543,649 (GRCm39)	I641L	possibly damaging	Het
Atrn	G	A	2: 130,803,595 (GRCm39)		probably null	Het
Bpifb4	T	C	2: 153,790,544 (GRCm39)	I145T	probably damaging	Het
Bub3	A	G	7: 131,170,454 (GRCm39)		probably null	Het
Catsperb	T	A	12: 101,429,404 (GRCm39)	D192E	probably damaging	Het
Ccdc178	G	A	18: 21,944,613 (GRCm39)	H849Y	possibly damaging	Het
Cd101	G	T	3: 100,901,079 (GRCm39)	Q998K	probably benign	Het
Cep135	A	T	5: 76,772,507 (GRCm39)	M631L	probably benign	Het
Cit	T	C	5: 116,107,174 (GRCm39)	V1102A	probably benign	Het
Col4a4	G	A	1: 82,507,332 (GRCm39)	T249M	unknown	Het
Cpne6	A	T	14: 55,753,786 (GRCm39)	I415F	possibly damaging	Het
Cyp4b1	T	C	4: 115,485,894 (GRCm39)	I348V	probably benign	Het
Defb28	T	C	2: 152,360,202 (GRCm39)	S6P	possibly damaging	Het
Dhrs7b	A	G	11: 60,743,344 (GRCm39)		probably benign	Het
Dhx29	T	C	13: 113,083,910 (GRCm39)		probably null	Het
Egfem1	A	G	3: 29,724,825 (GRCm39)	T476A	probably benign	Het
Enpp5	A	G	17: 44,396,279 (GRCm39)	D397G	probably damaging	Het
Eogt	G	A	6: 97,097,761 (GRCm39)	T279I	probably benign	Het
Fnip2	G	A	3: 79,388,233 (GRCm39)	H833Y	probably benign	Het
Gabrr2	A	T	4: 33,071,435 (GRCm39)	T92S	probably damaging	Het
Gm10110	T	A	14: 90,134,852 (GRCm39)		noncoding transcript	Het
Gria2	A	G	3: 80,648,260 (GRCm39)		probably benign	Het
Hmcn1	G	T	1: 150,528,326 (GRCm39)	T3274N	possibly damaging	Het
Hnrnpul1	C	T	7: 25,426,300 (GRCm39)	R517Q	probably damaging	Het
Hspa1b	T	C	17: 35,176,279 (GRCm39)	K569E	probably benign	Het
Ighv1-82	T	C	12: 115,916,372 (GRCm39)	Y46C	probably damaging	Het
Itga3	A	T	11: 94,959,136 (GRCm39)		probably benign	Het
Lrrc7	T	A	3: 157,880,745 (GRCm39)	R552*	probably null	Het
Med13	A	G	11: 86,189,403 (GRCm39)	S1169P	probably benign	Het
Muc4	T	A	16: 32,577,846 (GRCm39)	D2374E	unknown	Het
Myl9	T	A	2: 156,622,426 (GRCm39)	L70Q	probably damaging	Het
Nebl	C	T	2: 17,429,402 (GRCm39)	S243N	probably benign	Het
Nfat5	A	G	8: 108,071,546 (GRCm39)	Y314C	probably damaging	Het
Nr2f6	T	A	8: 71,827,380 (GRCm39)	D307V	probably damaging	Het
Nrp2	T	C	1: 62,824,237 (GRCm39)	S781P	probably benign	Het
Nub1	C	T	5: 24,897,923 (GRCm39)	T103I	possibly damaging	Het
Or4b1d	A	T	2: 89,968,889 (GRCm39)	V198D	possibly damaging	Het
Or51h5	T	A	7: 102,577,238 (GRCm39)	Y134*	probably null	Het
Pex5l	A	T	3: 33,136,201 (GRCm39)	M6K	probably benign	Het
Pgm3	A	C	9: 86,451,374 (GRCm39)	C93W	probably benign	Het
Pkhd1	A	G	1: 20,279,406 (GRCm39)	S2971P	probably benign	Het
Pkhd1l1	T	C	15: 44,408,782 (GRCm39)	L2423P	probably damaging	Het
Prkce	A	G	17: 86,483,654 (GRCm39)		probably benign	Het
Ptbp3	A	G	4: 59,494,615 (GRCm39)		probably benign	Het
Ptgis	T	A	2: 167,050,113 (GRCm39)	M339L	probably benign	Het
Pxdn	T	C	12: 30,025,568 (GRCm39)		probably benign	Het
Rab44	T	A	17: 29,363,451 (GRCm39)		probably null	Het
Ric1	A	G	19: 29,581,430 (GRCm39)	S1275G	probably benign	Het
Rnf213	C	A	11: 119,350,764 (GRCm39)		probably null	Het
Saraf	C	T	8: 34,632,428 (GRCm39)	T169I	probably damaging	Het
Sbk2	T	A	7: 4,960,119 (GRCm39)		probably null	Het
Setd1a	T	G	7: 127,394,896 (GRCm39)		probably benign	Het
Sit1	A	G	4: 43,483,157 (GRCm39)	Y73H	probably damaging	Het
Slc44a4	T	C	17: 35,142,399 (GRCm39)		probably benign	Het
Spopfm1	A	T	3: 94,173,217 (GRCm39)	Y75F	probably damaging	Het
Tas2r125	A	G	6: 132,887,190 (GRCm39)	T193A	probably benign	Het
Tbc1d9b	T	A	11: 50,052,528 (GRCm39)		probably null	Het
Tcf7l1	G	T	6: 72,604,403 (GRCm39)	H580Q	probably benign	Het
Tead1	T	G	7: 112,456,053 (GRCm39)	S115A	probably damaging	Het
Top2b	G	A	14: 16,413,947 (GRCm38)	G29D	probably damaging	Het
Trpv4	A	T	5: 114,773,613 (GRCm39)	C250S	probably damaging	Het
U2surp	A	C	9: 95,358,285 (GRCm39)	I655S	possibly damaging	Het
Ube2a	G	A	X: 36,138,360 (GRCm39)		probably benign	Het
Ubl7	A	G	9: 57,821,882 (GRCm39)	D77G	probably damaging	Het
Vmn1r91	T	C	7: 19,835,983 (GRCm39)	C301R	probably damaging	Het
Vmn2r90	A	T	17: 17,933,131 (GRCm39)	R230S	possibly damaging	Het
Wdfy3	T	A	5: 102,017,902 (GRCm39)	E2560V	probably damaging	Het
Zfp273	C	T	13: 67,973,895 (GRCm39)	A341V	probably benign	Het
Zfp512	C	T	5: 31,622,798 (GRCm39)	A33V	probably benign	Het

Other mutations in Rtn4rl1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01479:Rtn4rl1	APN	11	75,156,168 (GRCm39)	missense	probably damaging	1.00
IGL02161:Rtn4rl1	APN	11	75,156,666 (GRCm39)	missense	probably damaging	0.98
IGL02420:Rtn4rl1	APN	11	75,156,645 (GRCm39)	missense	probably damaging	0.98
IGL02641:Rtn4rl1	APN	11	75,156,650 (GRCm39)	missense	probably damaging	1.00
IGL02984:Rtn4rl1	UTSW	11	75,156,087 (GRCm39)	missense	probably benign	0.10
R0699:Rtn4rl1	UTSW	11	75,156,050 (GRCm39)	missense	probably benign	0.15
R0699:Rtn4rl1	UTSW	11	75,156,048 (GRCm39)	missense	possibly damaging	0.56
R1669:Rtn4rl1	UTSW	11	75,156,753 (GRCm39)	missense	probably benign
R1925:Rtn4rl1	UTSW	11	75,156,864 (GRCm39)	missense	probably benign	0.17
R4205:Rtn4rl1	UTSW	11	75,156,818 (GRCm39)	missense	probably damaging	1.00
R4205:Rtn4rl1	UTSW	11	75,156,809 (GRCm39)	missense	probably damaging	0.97
R6326:Rtn4rl1	UTSW	11	75,156,828 (GRCm39)	missense	possibly damaging	0.83
R6703:Rtn4rl1	UTSW	11	75,156,354 (GRCm39)	missense	probably benign	0.02
R7085:Rtn4rl1	UTSW	11	75,156,050 (GRCm39)	missense	probably benign	0.03
R7203:Rtn4rl1	UTSW	11	75,156,576 (GRCm39)	missense	possibly damaging	0.47
R7320:Rtn4rl1	UTSW	11	75,085,122 (GRCm39)	critical splice donor site	probably null
R7754:Rtn4rl1	UTSW	11	75,155,871 (GRCm39)	missense	probably benign
R8038:Rtn4rl1	UTSW	11	75,156,707 (GRCm39)	missense	possibly damaging	0.81
R8244:Rtn4rl1	UTSW	11	75,156,276 (GRCm39)	missense	probably damaging	1.00
R8306:Rtn4rl1	UTSW	11	75,156,147 (GRCm39)	missense	probably damaging	1.00
R8679:Rtn4rl1	UTSW	11	75,156,099 (GRCm39)	missense	probably damaging	0.99
R9240:Rtn4rl1	UTSW	11	75,156,082 (GRCm39)	missense	probably damaging	0.97
Z1186:Rtn4rl1	UTSW	11	75,156,863 (GRCm39)	missense	probably benign
Z1187:Rtn4rl1	UTSW	11	75,156,863 (GRCm39)	missense	probably benign
Z1188:Rtn4rl1	UTSW	11	75,156,863 (GRCm39)	missense	probably benign
Z1189:Rtn4rl1	UTSW	11	75,156,863 (GRCm39)	missense	probably benign
Z1190:Rtn4rl1	UTSW	11	75,156,863 (GRCm39)	missense	probably benign
Z1191:Rtn4rl1	UTSW	11	75,156,863 (GRCm39)	missense	probably benign
Z1192:Rtn4rl1	UTSW	11	75,156,863 (GRCm39)	missense	probably benign

Predicted Primers

PCR Primer
(F):5'- CCTCAATGGGAATGCTTGGGAC -3'
(R):5'- ATAGTCCTGCAGTTCGGTAAGC -3'

Sequencing Primer
(F):5'- GAATGGCTGCGAAGGTTCC -3'
(R):5'- AGTTCGGTAAGCTCTTTCCCAG -3'

Posted On

2014-12-04