Mutagenetix > Incidental Mutation

Incidental Mutation 'R2679:Vmn2r90'

250826

Institutional Source

Beutler Lab

Gene Symbol

Vmn2r90

Ensembl Gene

ENSMUSG00000092120

Gene Name

vomeronasal 2, receptor 90

Synonyms

EG626942

MMRRC Submission

040432-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.139) question?

Stock #

R2679 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

17924203-17954429 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 17933131 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Arginine to Serine at position 230 (R230S)

Ref Sequence

ENSEMBL: ENSMUSP00000126650 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000169805] [ENSMUST00000231659] [ENSMUST00000232078] [ENSMUST00000232113]

AlphaFold

E9PXJ8

Predicted Effect

possibly damaging
Transcript: ENSMUST00000169805
AA Change: R230S

PolyPhen 2 Score 0.463 (Sensitivity: 0.89; Specificity: 0.90)

SMART Domains

Protein: ENSMUSP00000126650
Gene: ENSMUSG00000092120
AA Change: R230S

Domain	Start	End	E-Value	Type
signal peptide	1	18	N/A	INTRINSIC
Pfam:ANF_receptor	77	471	1.8e-43	PFAM
Pfam:NCD3G	514	567	3e-22	PFAM
Pfam:7tm_3	600	835	9.8e-54	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000231659

Predicted Effect

probably benign
Transcript: ENSMUST00000232078

Predicted Effect

probably benign
Transcript: ENSMUST00000232113

Meta Mutation Damage Score

0.1795

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.3%
20x: 95.0%

Validation Efficiency

97% (67/69)

Allele List at MGI

Other mutations in this stock

Total: 70 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Asic2	A	G	11: 81,042,780 (GRCm39)	V171A	probably benign	Het
Atf7ip	A	T	6: 136,543,649 (GRCm39)	I641L	possibly damaging	Het
Atrn	G	A	2: 130,803,595 (GRCm39)		probably null	Het
Bpifb4	T	C	2: 153,790,544 (GRCm39)	I145T	probably damaging	Het
Bub3	A	G	7: 131,170,454 (GRCm39)		probably null	Het
Catsperb	T	A	12: 101,429,404 (GRCm39)	D192E	probably damaging	Het
Ccdc178	G	A	18: 21,944,613 (GRCm39)	H849Y	possibly damaging	Het
Cd101	G	T	3: 100,901,079 (GRCm39)	Q998K	probably benign	Het
Cep135	A	T	5: 76,772,507 (GRCm39)	M631L	probably benign	Het
Cit	T	C	5: 116,107,174 (GRCm39)	V1102A	probably benign	Het
Col4a4	G	A	1: 82,507,332 (GRCm39)	T249M	unknown	Het
Cpne6	A	T	14: 55,753,786 (GRCm39)	I415F	possibly damaging	Het
Cyp4b1	T	C	4: 115,485,894 (GRCm39)	I348V	probably benign	Het
Defb28	T	C	2: 152,360,202 (GRCm39)	S6P	possibly damaging	Het
Dhrs7b	A	G	11: 60,743,344 (GRCm39)		probably benign	Het
Dhx29	T	C	13: 113,083,910 (GRCm39)		probably null	Het
Egfem1	A	G	3: 29,724,825 (GRCm39)	T476A	probably benign	Het
Enpp5	A	G	17: 44,396,279 (GRCm39)	D397G	probably damaging	Het
Eogt	G	A	6: 97,097,761 (GRCm39)	T279I	probably benign	Het
Fnip2	G	A	3: 79,388,233 (GRCm39)	H833Y	probably benign	Het
Gabrr2	A	T	4: 33,071,435 (GRCm39)	T92S	probably damaging	Het
Gm10110	T	A	14: 90,134,852 (GRCm39)		noncoding transcript	Het
Gria2	A	G	3: 80,648,260 (GRCm39)		probably benign	Het
Hmcn1	G	T	1: 150,528,326 (GRCm39)	T3274N	possibly damaging	Het
Hnrnpul1	C	T	7: 25,426,300 (GRCm39)	R517Q	probably damaging	Het
Hspa1b	T	C	17: 35,176,279 (GRCm39)	K569E	probably benign	Het
Ighv1-82	T	C	12: 115,916,372 (GRCm39)	Y46C	probably damaging	Het
Itga3	A	T	11: 94,959,136 (GRCm39)		probably benign	Het
Lrrc7	T	A	3: 157,880,745 (GRCm39)	R552*	probably null	Het
Med13	A	G	11: 86,189,403 (GRCm39)	S1169P	probably benign	Het
Muc4	T	A	16: 32,577,846 (GRCm39)	D2374E	unknown	Het
Myl9	T	A	2: 156,622,426 (GRCm39)	L70Q	probably damaging	Het
Nebl	C	T	2: 17,429,402 (GRCm39)	S243N	probably benign	Het
Nfat5	A	G	8: 108,071,546 (GRCm39)	Y314C	probably damaging	Het
Nr2f6	T	A	8: 71,827,380 (GRCm39)	D307V	probably damaging	Het
Nrp2	T	C	1: 62,824,237 (GRCm39)	S781P	probably benign	Het
Nub1	C	T	5: 24,897,923 (GRCm39)	T103I	possibly damaging	Het
Or4b1d	A	T	2: 89,968,889 (GRCm39)	V198D	possibly damaging	Het
Or51h5	T	A	7: 102,577,238 (GRCm39)	Y134*	probably null	Het
Pex5l	A	T	3: 33,136,201 (GRCm39)	M6K	probably benign	Het
Pgm3	A	C	9: 86,451,374 (GRCm39)	C93W	probably benign	Het
Pkhd1	A	G	1: 20,279,406 (GRCm39)	S2971P	probably benign	Het
Pkhd1l1	T	C	15: 44,408,782 (GRCm39)	L2423P	probably damaging	Het
Prkce	A	G	17: 86,483,654 (GRCm39)		probably benign	Het
Ptbp3	A	G	4: 59,494,615 (GRCm39)		probably benign	Het
Ptgis	T	A	2: 167,050,113 (GRCm39)	M339L	probably benign	Het
Pxdn	T	C	12: 30,025,568 (GRCm39)		probably benign	Het
Rab44	T	A	17: 29,363,451 (GRCm39)		probably null	Het
Ric1	A	G	19: 29,581,430 (GRCm39)	S1275G	probably benign	Het
Rnf213	C	A	11: 119,350,764 (GRCm39)		probably null	Het
Rtn4rl1	A	T	11: 75,156,552 (GRCm39)	E328V	probably benign	Het
Saraf	C	T	8: 34,632,428 (GRCm39)	T169I	probably damaging	Het
Sbk2	T	A	7: 4,960,119 (GRCm39)		probably null	Het
Setd1a	T	G	7: 127,394,896 (GRCm39)		probably benign	Het
Sit1	A	G	4: 43,483,157 (GRCm39)	Y73H	probably damaging	Het
Slc44a4	T	C	17: 35,142,399 (GRCm39)		probably benign	Het
Spopfm1	A	T	3: 94,173,217 (GRCm39)	Y75F	probably damaging	Het
Tas2r125	A	G	6: 132,887,190 (GRCm39)	T193A	probably benign	Het
Tbc1d9b	T	A	11: 50,052,528 (GRCm39)		probably null	Het
Tcf7l1	G	T	6: 72,604,403 (GRCm39)	H580Q	probably benign	Het
Tead1	T	G	7: 112,456,053 (GRCm39)	S115A	probably damaging	Het
Top2b	G	A	14: 16,413,947 (GRCm38)	G29D	probably damaging	Het
Trpv4	A	T	5: 114,773,613 (GRCm39)	C250S	probably damaging	Het
U2surp	A	C	9: 95,358,285 (GRCm39)	I655S	possibly damaging	Het
Ube2a	G	A	X: 36,138,360 (GRCm39)		probably benign	Het
Ubl7	A	G	9: 57,821,882 (GRCm39)	D77G	probably damaging	Het
Vmn1r91	T	C	7: 19,835,983 (GRCm39)	C301R	probably damaging	Het
Wdfy3	T	A	5: 102,017,902 (GRCm39)	E2560V	probably damaging	Het
Zfp273	C	T	13: 67,973,895 (GRCm39)	A341V	probably benign	Het
Zfp512	C	T	5: 31,622,798 (GRCm39)	A33V	probably benign	Het

Other mutations in Vmn2r90

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00092:Vmn2r90	APN	17	17,953,758 (GRCm39)	missense	probably benign	0.00
IGL01330:Vmn2r90	APN	17	17,953,542 (GRCm39)	missense	probably benign	0.00
IGL01989:Vmn2r90	APN	17	17,933,494 (GRCm39)	nonsense	probably null
IGL02080:Vmn2r90	APN	17	17,933,120 (GRCm39)	missense	probably damaging	1.00
IGL02112:Vmn2r90	APN	17	17,932,465 (GRCm39)	missense	probably damaging	0.98
IGL02123:Vmn2r90	APN	17	17,953,744 (GRCm39)	missense	probably benign	0.01
IGL02749:Vmn2r90	APN	17	17,947,122 (GRCm39)	makesense	probably null
IGL03114:Vmn2r90	APN	17	17,953,771 (GRCm39)	missense	probably damaging	1.00
R0131:Vmn2r90	UTSW	17	17,932,511 (GRCm39)	missense	probably benign	0.00
R0131:Vmn2r90	UTSW	17	17,932,511 (GRCm39)	missense	probably benign	0.00
R0132:Vmn2r90	UTSW	17	17,932,511 (GRCm39)	missense	probably benign	0.00
R0184:Vmn2r90	UTSW	17	17,947,139 (GRCm39)	nonsense	probably null
R0379:Vmn2r90	UTSW	17	17,948,401 (GRCm39)	missense	probably damaging	1.00
R1022:Vmn2r90	UTSW	17	17,948,400 (GRCm39)	missense	probably damaging	1.00
R1024:Vmn2r90	UTSW	17	17,948,400 (GRCm39)	missense	probably damaging	1.00
R1897:Vmn2r90	UTSW	17	17,953,566 (GRCm39)	missense	probably damaging	1.00
R1993:Vmn2r90	UTSW	17	17,933,525 (GRCm39)	missense	probably damaging	1.00
R2472:Vmn2r90	UTSW	17	17,948,408 (GRCm39)	missense	probably damaging	1.00
R2508:Vmn2r90	UTSW	17	17,954,229 (GRCm39)	missense	probably damaging	1.00
R3409:Vmn2r90	UTSW	17	17,953,638 (GRCm39)	missense	probably benign	0.00
R4693:Vmn2r90	UTSW	17	17,953,956 (GRCm39)	missense	possibly damaging	0.91
R4797:Vmn2r90	UTSW	17	17,932,567 (GRCm39)	missense	probably damaging	1.00
R5258:Vmn2r90	UTSW	17	17,933,114 (GRCm39)	missense	probably benign	0.12
R5358:Vmn2r90	UTSW	17	17,924,412 (GRCm39)	critical splice donor site	probably null
R5445:Vmn2r90	UTSW	17	17,954,386 (GRCm39)	missense	probably benign	0.04
R5446:Vmn2r90	UTSW	17	17,932,464 (GRCm39)	missense	probably damaging	0.99
R5567:Vmn2r90	UTSW	17	17,932,336 (GRCm39)	missense	probably damaging	1.00
R5680:Vmn2r90	UTSW	17	17,947,034 (GRCm39)	missense	possibly damaging	0.93
R5686:Vmn2r90	UTSW	17	17,933,712 (GRCm39)	missense	probably benign	0.02
R5751:Vmn2r90	UTSW	17	17,954,128 (GRCm39)	missense	probably damaging	0.96
R6156:Vmn2r90	UTSW	17	17,953,606 (GRCm39)	missense	probably benign	0.01
R6185:Vmn2r90	UTSW	17	17,953,644 (GRCm39)	missense	probably damaging	1.00
R6450:Vmn2r90	UTSW	17	17,953,498 (GRCm39)	missense	possibly damaging	0.47
R6707:Vmn2r90	UTSW	17	17,948,364 (GRCm39)	missense	probably damaging	1.00
R6802:Vmn2r90	UTSW	17	17,932,351 (GRCm39)	missense	probably damaging	1.00
R6913:Vmn2r90	UTSW	17	17,924,323 (GRCm39)	missense	probably damaging	1.00
R7070:Vmn2r90	UTSW	17	17,924,313 (GRCm39)	missense	probably damaging	0.98
R7237:Vmn2r90	UTSW	17	17,924,249 (GRCm39)	missense	possibly damaging	0.92
R7503:Vmn2r90	UTSW	17	17,933,510 (GRCm39)	missense	not run
R7698:Vmn2r90	UTSW	17	17,953,596 (GRCm39)	missense	probably benign
R7943:Vmn2r90	UTSW	17	17,932,566 (GRCm39)	missense	probably damaging	1.00
R8072:Vmn2r90	UTSW	17	17,947,142 (GRCm39)	missense	probably damaging	1.00
R8128:Vmn2r90	UTSW	17	17,954,155 (GRCm39)	missense	probably damaging	1.00
R8295:Vmn2r90	UTSW	17	17,948,358 (GRCm39)	missense	probably benign	0.03
R8345:Vmn2r90	UTSW	17	17,933,127 (GRCm39)	nonsense	probably null
R8682:Vmn2r90	UTSW	17	17,932,344 (GRCm39)	missense	possibly damaging	0.95
R8716:Vmn2r90	UTSW	17	17,924,343 (GRCm39)	missense	probably damaging	0.98
R9041:Vmn2r90	UTSW	17	17,954,286 (GRCm39)	missense	probably benign	0.00
R9412:Vmn2r90	UTSW	17	17,954,213 (GRCm39)	missense	probably damaging	1.00
R9607:Vmn2r90	UTSW	17	17,953,638 (GRCm39)	missense	possibly damaging	0.88
R9705:Vmn2r90	UTSW	17	17,933,039 (GRCm39)	missense	possibly damaging	0.91
Z1088:Vmn2r90	UTSW	17	17,953,879 (GRCm39)	missense	probably damaging	1.00
Z1176:Vmn2r90	UTSW	17	17,933,079 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- TTCTGCAGCTCACTTTTGGG -3'
(R):5'- AGAGTTTAAGACCCAGACTTTCC -3'

Sequencing Primer
(F):5'- TCACTTTTGGGCCTTTTGATTC -3'
(R):5'- ACAACTGTGCAATATGTCGC -3'

Posted On

2014-12-04