Mutagenetix > Incidental Mutation

Incidental Mutation 'R2507:Zfp426'

251350

Institutional Source

Beutler Lab

Gene Symbol

Zfp426

Ensembl Gene

ENSMUSG00000059475

Gene Name

zinc finger protein 426

Synonyms

Zfp68-rs1, KRAB1, Zfo61, 2900057C04Rik

MMRRC Submission

040413-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.083) question?

Stock #

R2507 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

20379845-20404042 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 20381727 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Lysine to Arginine at position 420 (K420R)

Ref Sequence

ENSEMBL: ENSMUSP00000127045 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000080386] [ENSMUST00000115562] [ENSMUST00000163348] [ENSMUST00000163427] [ENSMUST00000164799] [ENSMUST00000164825] [ENSMUST00000166005] [ENSMUST00000169558] [ENSMUST00000167457] [ENSMUST00000168095] [ENSMUST00000169269]

AlphaFold

Q8R1D1

Predicted Effect

probably benign
Transcript: ENSMUST00000080386
AA Change: K406R

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)

SMART Domains

Protein: ENSMUSP00000079250
Gene: ENSMUSG00000059475
AA Change: K406R

Domain	Start	End	E-Value	Type
KRAB	39	99	5.56e-31	SMART
ZnF_C2H2	219	241	2.12e-4	SMART
ZnF_C2H2	274	296	1.69e-3	SMART
ZnF_C2H2	302	324	8.81e-2	SMART
ZnF_C2H2	330	352	5.59e-4	SMART
ZnF_C2H2	358	380	3.16e-3	SMART
ZnF_C2H2	386	408	1.43e-1	SMART
ZnF_C2H2	414	436	1.79e-2	SMART
ZnF_C2H2	442	464	1.22e-4	SMART
ZnF_C2H2	470	492	1.38e-3	SMART
ZnF_C2H2	498	520	3.58e-2	SMART
ZnF_C2H2	528	550	3.44e-4	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000115562
AA Change: K406R

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)

SMART Domains

Protein: ENSMUSP00000111224
Gene: ENSMUSG00000059475
AA Change: K406R

Domain	Start	End	E-Value	Type
KRAB	39	99	5.56e-31	SMART
ZnF_C2H2	219	241	2.12e-4	SMART
ZnF_C2H2	274	296	1.69e-3	SMART
ZnF_C2H2	302	324	8.81e-2	SMART
ZnF_C2H2	330	352	5.59e-4	SMART
ZnF_C2H2	358	380	3.16e-3	SMART
ZnF_C2H2	386	408	1.43e-1	SMART
ZnF_C2H2	414	436	1.79e-2	SMART
ZnF_C2H2	442	464	1.22e-4	SMART
ZnF_C2H2	470	492	1.38e-3	SMART
ZnF_C2H2	498	520	3.58e-2	SMART
ZnF_C2H2	528	550	3.44e-4	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000163348
AA Change: K405R

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)

SMART Domains

Protein: ENSMUSP00000126446
Gene: ENSMUSG00000059475
AA Change: K405R

Domain	Start	End	E-Value	Type
KRAB	39	99	5.56e-31	SMART
ZnF_C2H2	218	240	2.12e-4	SMART
ZnF_C2H2	273	295	1.69e-3	SMART
ZnF_C2H2	301	323	8.81e-2	SMART
ZnF_C2H2	329	351	5.59e-4	SMART
ZnF_C2H2	357	379	3.16e-3	SMART
ZnF_C2H2	385	407	1.43e-1	SMART
ZnF_C2H2	413	435	1.79e-2	SMART
ZnF_C2H2	441	463	1.22e-4	SMART
ZnF_C2H2	469	491	1.38e-3	SMART
ZnF_C2H2	497	519	3.58e-2	SMART
ZnF_C2H2	527	549	3.44e-4	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000163427

Predicted Effect

probably benign
Transcript: ENSMUST00000164799

SMART Domains

Protein: ENSMUSP00000130120
Gene: ENSMUSG00000059475

Domain	Start	End	E-Value	Type
KRAB	53	93	1.2e-12	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000164825

SMART Domains

Protein: ENSMUSP00000127914
Gene: ENSMUSG00000059475

Domain	Start	End	E-Value	Type
KRAB	39	99	5.56e-31	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000166005
AA Change: K406R

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)

SMART Domains

Protein: ENSMUSP00000129727
Gene: ENSMUSG00000059475
AA Change: K406R

Domain	Start	End	E-Value	Type
KRAB	39	99	5.56e-31	SMART
ZnF_C2H2	219	241	2.12e-4	SMART
ZnF_C2H2	274	296	1.69e-3	SMART
ZnF_C2H2	302	324	8.81e-2	SMART
ZnF_C2H2	330	352	5.59e-4	SMART
ZnF_C2H2	358	380	3.16e-3	SMART
ZnF_C2H2	386	408	1.43e-1	SMART
ZnF_C2H2	414	436	1.79e-2	SMART
ZnF_C2H2	442	464	1.22e-4	SMART
ZnF_C2H2	470	492	1.38e-3	SMART
ZnF_C2H2	498	520	3.58e-2	SMART
ZnF_C2H2	528	550	3.44e-4	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000169558
AA Change: K420R

PolyPhen 2 Score 0.002 (Sensitivity: 0.99; Specificity: 0.30)

SMART Domains

Protein: ENSMUSP00000127045
Gene: ENSMUSG00000059475
AA Change: K420R

Domain	Start	End	E-Value	Type
KRAB	53	113	5.56e-31	SMART
ZnF_C2H2	233	255	2.12e-4	SMART
ZnF_C2H2	288	310	1.69e-3	SMART
ZnF_C2H2	316	338	8.81e-2	SMART
ZnF_C2H2	344	366	5.59e-4	SMART
ZnF_C2H2	372	394	3.16e-3	SMART
ZnF_C2H2	400	422	1.43e-1	SMART
ZnF_C2H2	428	450	1.79e-2	SMART
ZnF_C2H2	456	478	1.22e-4	SMART
ZnF_C2H2	484	506	1.38e-3	SMART
ZnF_C2H2	512	534	3.58e-2	SMART
ZnF_C2H2	542	564	3.44e-4	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000167457
AA Change: K339R

PolyPhen 2 Score 0.002 (Sensitivity: 0.99; Specificity: 0.30)

SMART Domains

Protein: ENSMUSP00000130945
Gene: ENSMUSG00000059475
AA Change: K339R

Domain	Start	End	E-Value	Type
KRAB	1	32	1.46e0	SMART
ZnF_C2H2	152	174	2.12e-4	SMART
ZnF_C2H2	207	229	1.69e-3	SMART
ZnF_C2H2	235	257	8.81e-2	SMART
ZnF_C2H2	263	285	5.59e-4	SMART
ZnF_C2H2	291	313	3.16e-3	SMART
ZnF_C2H2	319	341	1.43e-1	SMART
ZnF_C2H2	347	369	1.79e-2	SMART
ZnF_C2H2	375	397	1.22e-4	SMART
ZnF_C2H2	403	425	1.38e-3	SMART
ZnF_C2H2	431	453	3.58e-2	SMART
ZnF_C2H2	461	483	3.44e-4	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000180846

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000166465

Predicted Effect

probably benign
Transcript: ENSMUST00000168095

SMART Domains

Protein: ENSMUSP00000130309
Gene: ENSMUSG00000059475

Domain	Start	End	E-Value	Type
KRAB	39	83	1.37e-12	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000169269

SMART Domains

Protein: ENSMUSP00000128843
Gene: ENSMUSG00000059475

Domain	Start	End	E-Value	Type
KRAB	39	69	7.16e-2	SMART

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.2%
20x: 94.7%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] Kaposi's sarcoma-associated herpesvirus (KSHV) can be reactivated from latency by the viral protein RTA. The protein encoded by this gene is a zinc finger transcriptional repressor that interacts with RTA to modulate RTA-mediated reactivation of KSHV. While the encoded protein can repress KSHV reactivation, RTA can induce degradation of this protein through the ubiquitin-proteasome pathway to overcome the repression. Several transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Dec 2015]

Allele List at MGI

Other mutations in this stock

Total: 77 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700020N01Rik	A	G	10: 21,497,681 (GRCm39)		probably benign	Het
4930535I16Rik	G	A	4: 123,811,740 (GRCm39)		probably benign	Het
Akr1b1	C	T	6: 34,286,999 (GRCm39)	E186K	probably damaging	Het
Apc	A	T	18: 34,449,590 (GRCm39)	N2128I	possibly damaging	Het
Api5	T	C	2: 94,260,162 (GRCm39)	I31M	probably damaging	Het
Armcx4	T	G	X: 133,596,128 (GRCm39)	V2012G	possibly damaging	Het
Aurka	T	C	2: 172,212,365 (GRCm39)	E4G	probably benign	Het
B4galt5	T	A	2: 167,148,558 (GRCm39)	M187L	probably benign	Het
Bsn	T	C	9: 107,993,313 (GRCm39)	D813G	probably damaging	Het
Bub1	A	T	2: 127,643,343 (GRCm39)	D1000E	probably benign	Het
Cacna1f	T	G	X: 7,492,687 (GRCm39)		probably null	Het
Cdh6	A	G	15: 13,041,447 (GRCm39)	I539T	probably benign	Het
Cdhr3	T	C	12: 33,088,914 (GRCm39)	D756G	probably benign	Het
Cenph	A	T	13: 100,907,744 (GRCm39)	D85E	probably benign	Het
Chd9	C	T	8: 91,760,615 (GRCm39)	P2120L	probably benign	Het
Clec2h	A	G	6: 128,650,945 (GRCm39)	N75S	probably benign	Het
Cnga1	C	T	5: 72,776,404 (GRCm39)	V20I	possibly damaging	Het
Cox4i1	T	A	8: 121,400,029 (GRCm39)	V51E	possibly damaging	Het
Cpne3	A	T	4: 19,553,871 (GRCm39)	N53K	probably damaging	Het
Cpt1b	A	G	15: 89,303,301 (GRCm39)	F585L	probably benign	Het
Daam1	G	A	12: 72,021,997 (GRCm39)	D732N	probably damaging	Het
Dner	A	T	1: 84,560,801 (GRCm39)	C115S	probably damaging	Het
Dop1a	T	A	9: 86,395,170 (GRCm39)	F759Y	probably damaging	Het
Dst	T	C	1: 34,050,990 (GRCm39)	Y29H	probably damaging	Het
Dst	T	C	1: 34,227,498 (GRCm39)	V1875A	possibly damaging	Het
Duox1	A	G	2: 122,163,619 (GRCm39)	D817G	probably benign	Het
Emc2	A	T	15: 43,375,094 (GRCm39)		probably null	Het
Erich3	A	T	3: 154,404,296 (GRCm39)	E51V	probably null	Het
Exoc2	A	G	13: 31,066,348 (GRCm39)	Y443H	possibly damaging	Het
Fbf1	T	C	11: 116,046,252 (GRCm39)	R200G	probably benign	Het
Fdxr	G	A	11: 115,162,806 (GRCm39)	T100I	probably damaging	Het
Galnt11	C	G	5: 25,452,610 (GRCm39)	P41A	probably damaging	Het
Galnt4	A	G	10: 98,945,148 (GRCm39)	K291R	possibly damaging	Het
Gm12695	T	A	4: 96,642,426 (GRCm39)	E301V	probably damaging	Het
Gopc	C	T	10: 52,229,422 (GRCm39)		probably null	Het
Gria1	A	T	11: 57,180,146 (GRCm39)	T699S	probably null	Het
Gsr	T	G	8: 34,170,316 (GRCm39)	D200E	probably benign	Het
Ikzf2	G	A	1: 69,578,447 (GRCm39)	A282V	probably benign	Het
Irak2	T	C	6: 113,624,639 (GRCm39)	I45T	probably damaging	Het
Irx1	T	C	13: 72,107,939 (GRCm39)	K248E	probably damaging	Het
Kcns3	A	C	12: 11,142,087 (GRCm39)	V204G	possibly damaging	Het
Lmo1	C	A	7: 108,739,848 (GRCm39)	M91I	probably damaging	Het
Map3k21	A	G	8: 126,666,677 (GRCm39)	D623G	possibly damaging	Het
Map4	A	G	9: 109,866,551 (GRCm39)		probably benign	Het
Mark3	T	A	12: 111,593,676 (GRCm39)	V236E	probably damaging	Het
Med23	A	G	10: 24,786,711 (GRCm39)	D939G	probably damaging	Het
Mrgpra9	A	G	7: 46,885,242 (GRCm39)	C142R	possibly damaging	Het
N4bp2	T	A	5: 65,947,404 (GRCm39)	D11E	probably benign	Het
Ntng2	T	C	2: 29,097,531 (GRCm39)	N310S	probably damaging	Het
Or10ak7	T	C	4: 118,791,122 (GRCm39)	M308V	probably benign	Het
Or6b3	A	G	1: 92,439,100 (GRCm39)	S217P	probably damaging	Het
Pcolce	A	G	5: 137,605,313 (GRCm39)	V260A	possibly damaging	Het
Pds5b	C	A	5: 150,679,893 (GRCm39)	T533K	possibly damaging	Het
Pecr	A	G	1: 72,301,135 (GRCm39)	Y268H	probably benign	Het
Phax	T	A	18: 56,719,956 (GRCm39)	F299Y	probably damaging	Het
Phip	T	C	9: 82,797,392 (GRCm39)	H537R	possibly damaging	Het
Pramel32	T	A	4: 88,547,448 (GRCm39)	K161N	possibly damaging	Het
Prpf39	T	A	12: 65,104,589 (GRCm39)	F551L	probably benign	Het
Ptch1	T	G	13: 63,672,773 (GRCm39)	E944A	probably benign	Het
Ralgapa1	G	A	12: 55,764,986 (GRCm39)	P889S	probably damaging	Het
Rpap1	A	G	2: 119,610,535 (GRCm39)		probably null	Het
Rufy3	T	C	5: 88,797,757 (GRCm39)	S645P	probably damaging	Het
Samd1	CGAGGAGGAGGAGGAGGAGGA	CGAGGAGGAGGAGGAGGA	8: 84,725,625 (GRCm39)		probably benign	Het
Spata7	G	T	12: 98,624,709 (GRCm39)	A172S	probably benign	Het
Stk35	A	G	2: 129,643,435 (GRCm39)	T140A	probably damaging	Het
Thop1	T	G	10: 80,906,098 (GRCm39)	M1R	probably null	Het
Tlr1	T	C	5: 65,082,639 (GRCm39)	Y646C	probably damaging	Het
Tpp2	A	G	1: 44,040,609 (GRCm39)	Y290C	probably benign	Het
Tpr	A	G	1: 150,268,695 (GRCm39)	M1V	probably null	Het
Trim6	T	C	7: 103,877,392 (GRCm39)	F161L	probably damaging	Het
Ubash3b	T	C	9: 41,068,650 (GRCm39)	K25E	possibly damaging	Het
Unc45b	G	A	11: 82,830,963 (GRCm39)		probably null	Het
Unc80	A	G	1: 66,651,266 (GRCm39)	N1537S	possibly damaging	Het
Usb1	T	C	8: 96,069,752 (GRCm39)	F100S	probably damaging	Het
Vmn1r17	C	A	6: 57,338,244 (GRCm39)	L40F	probably damaging	Het
Vmn1r233	A	T	17: 21,214,110 (GRCm39)	M280K	probably benign	Het
Zfp37	A	T	4: 62,109,493 (GRCm39)	C524S	probably damaging	Het

Other mutations in Zfp426

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01647:Zfp426	APN	9	20,389,453 (GRCm39)	start codon destroyed	possibly damaging	0.93
IGL02499:Zfp426	APN	9	20,384,414 (GRCm39)	splice site	probably benign
R0157:Zfp426	UTSW	9	20,382,432 (GRCm39)	missense	probably benign	0.00
R0356:Zfp426	UTSW	9	20,382,541 (GRCm39)	missense	probably benign	0.15
R0456:Zfp426	UTSW	9	20,381,593 (GRCm39)	missense	probably damaging	1.00
R0504:Zfp426	UTSW	9	20,381,327 (GRCm39)	missense	probably damaging	0.96
R2352:Zfp426	UTSW	9	20,381,401 (GRCm39)	missense	probably benign	0.08
R2509:Zfp426	UTSW	9	20,381,977 (GRCm39)	missense	possibly damaging	0.68
R3771:Zfp426	UTSW	9	20,384,413 (GRCm39)	splice site	probably null
R3772:Zfp426	UTSW	9	20,384,413 (GRCm39)	splice site	probably null
R3773:Zfp426	UTSW	9	20,384,413 (GRCm39)	splice site	probably null
R3864:Zfp426	UTSW	9	20,381,382 (GRCm39)	missense	possibly damaging	0.88
R4649:Zfp426	UTSW	9	20,381,923 (GRCm39)	missense	possibly damaging	0.66
R4798:Zfp426	UTSW	9	20,382,310 (GRCm39)	missense	probably benign	0.17
R4863:Zfp426	UTSW	9	20,381,334 (GRCm39)	missense	probably damaging	1.00
R4894:Zfp426	UTSW	9	20,386,369 (GRCm39)	intron	probably benign
R5421:Zfp426	UTSW	9	20,382,015 (GRCm39)	missense	probably damaging	0.99
R6084:Zfp426	UTSW	9	20,381,923 (GRCm39)	missense	possibly damaging	0.66
R6610:Zfp426	UTSW	9	20,384,389 (GRCm39)	missense	probably damaging	1.00
R7239:Zfp426	UTSW	9	20,381,887 (GRCm39)	missense	probably benign	0.00
R7441:Zfp426	UTSW	9	20,382,147 (GRCm39)	missense	possibly damaging	0.95
R7646:Zfp426	UTSW	9	20,381,320 (GRCm39)	missense	probably damaging	0.98
R7827:Zfp426	UTSW	9	20,381,446 (GRCm39)	missense	probably damaging	1.00
R8987:Zfp426	UTSW	9	20,387,744 (GRCm39)	missense	probably damaging	1.00
R8993:Zfp426	UTSW	9	20,386,296 (GRCm39)	missense	probably damaging	1.00
R9043:Zfp426	UTSW	9	20,386,308 (GRCm39)	missense	probably damaging	1.00
R9450:Zfp426	UTSW	9	20,381,577 (GRCm39)	missense	probably benign	0.04

Predicted Primers

PCR Primer
(F):5'- GAGCACAAACAAGGGCTTCC -3'
(R):5'- AGGTCTCACACTGGAGACAA -3'

Sequencing Primer
(F):5'- AGGATGACTGTAGGCTTTTCCACAC -3'
(R):5'- CACTGGAGACAAGCCCTATGG -3'

Posted On

2014-12-04