Mutagenetix > Incidental Mutation

Incidental Mutation 'R0312:Cfap65'

25239

Institutional Source

Beutler Lab

Gene Symbol

Cfap65

Ensembl Gene

ENSMUSG00000047021

Gene Name

cilia and flagella associated protein 65

Synonyms

Ccdc108, B230363K08Rik

MMRRC Submission

038522-MU

Accession Numbers

Essential gene?

Possibly essential (E-score: 0.676) question?

Stock #

R0312 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

74902071-74935599 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

G to A at 74904067 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Arginine to Tryptophan at position 1600 (R1600W)

Ref Sequence

ENSEMBL: ENSMUSP00000092440 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000094844]

AlphaFold

Q3V0B4

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000083682

Predicted Effect

probably damaging
Transcript: ENSMUST00000094844
AA Change: R1600W

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000092440
Gene: ENSMUSG00000047021
AA Change: R1600W

Domain	Start	End	E-Value	Type
transmembrane domain	111	133	N/A	INTRINSIC
low complexity region	212	223	N/A	INTRINSIC
internal_repeat_1	745	890	9.31e-5	PROSPERO
internal_repeat_1	1167	1322	9.31e-5	PROSPERO
low complexity region	1350	1361	N/A	INTRINSIC
low complexity region	1574	1592	N/A	INTRINSIC
coiled coil region	1687	1724	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000160540

Meta Mutation Damage Score

0.6467

Coding Region Coverage

1x: 98.9%
3x: 97.9%
10x: 95.3%
20x: 90.3%

Validation Efficiency

100% (60/60)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene has putative coiled-coil domains and may be a transmembrane protein. The chicken ortholog of this gene is involved in the Rose-comb mutation, which is a large chromosome inversion, resulting in altered comb morphology and defects in sperm motility. [provided by RefSeq, Aug 2016]

Allele List at MGI

Other mutations in this stock

Total: 62 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abcb5	G	T	12: 118,872,837 (GRCm38)	A1113D	probably damaging	Het
Adcy1	G	T	11: 7,149,538 (GRCm38)	A673S	probably benign	Het
Apob	T	A	12: 8,009,034 (GRCm38)	H2505Q	probably benign	Het
Arhgap12	A	G	18: 6,061,982 (GRCm38)		probably benign	Het
Bcl9	C	T	3: 97,209,411 (GRCm38)	E656K	probably benign	Het
Bnc1	C	T	7: 81,977,324 (GRCm38)	R106H	possibly damaging	Het
Ccdc54	T	C	16: 50,590,802 (GRCm38)	K34E	possibly damaging	Het
Csmd1	A	T	8: 15,984,760 (GRCm38)	N2470K	probably damaging	Het
Cspp1	T	C	1: 10,058,829 (GRCm38)		probably benign	Het
Dgkz	A	T	2: 91,938,339 (GRCm38)	I699N	probably damaging	Het
Dhx40	G	A	11: 86,771,949 (GRCm38)	T639I	probably damaging	Het
Dlg1	A	G	16: 31,790,267 (GRCm38)	T227A	probably benign	Het
Dnah10	G	A	5: 124,796,369 (GRCm38)		probably benign	Het
Dnah3	T	A	7: 120,045,659 (GRCm38)	K1133M	probably damaging	Het
Dock5	G	C	14: 67,795,991 (GRCm38)	F976L	possibly damaging	Het
Evc	C	T	5: 37,328,541 (GRCm38)	C97Y	possibly damaging	Het
Fbxw7	T	C	3: 84,967,569 (GRCm38)		probably benign	Het
Fggy	A	C	4: 95,844,185 (GRCm38)	D112A	probably damaging	Het
Fpgs	A	G	2: 32,684,801 (GRCm38)	Y435H	probably damaging	Het
Fryl	T	A	5: 73,072,888 (GRCm38)	H1642L	probably damaging	Het
G3bp1	T	C	11: 55,498,626 (GRCm38)	F383L	probably damaging	Het
Gda	T	A	19: 21,417,005 (GRCm38)	I237F	probably damaging	Het
Glt1d1	A	G	5: 127,691,070 (GRCm38)	N247S	probably damaging	Het
Gm7647	T	C	5: 94,962,980 (GRCm38)	S7P	probably benign	Het
Gpr31b	C	T	17: 13,051,611 (GRCm38)	V224I	probably damaging	Het
Hlf	G	A	11: 90,387,875 (GRCm38)	P121L	possibly damaging	Het
Hsh2d	G	A	8: 72,200,460 (GRCm38)	D229N	probably benign	Het
Ism1	G	T	2: 139,678,672 (GRCm38)	M1I	probably null	Het
Kansl1l	T	C	1: 66,778,106 (GRCm38)	N365S	probably null	Het
Lama1	T	C	17: 67,775,851 (GRCm38)	L1368P	possibly damaging	Het
Lima1	A	G	15: 99,781,087 (GRCm38)	V491A	possibly damaging	Het
Lrch1	G	T	14: 74,947,594 (GRCm38)	H23N	possibly damaging	Het
Lrp1b	A	G	2: 41,282,171 (GRCm38)	V1488A	probably damaging	Het
Lrp8	T	C	4: 107,806,855 (GRCm38)		probably benign	Het
Lrrc8e	A	G	8: 4,235,733 (GRCm38)	S653G	probably benign	Het
Mnat1	A	G	12: 73,181,784 (GRCm38)	T141A	possibly damaging	Het
Mpeg1	C	A	19: 12,462,403 (GRCm38)	N408K	probably damaging	Het
Myo7b	T	C	18: 32,014,337 (GRCm38)	E51G	possibly damaging	Het
Myrf	G	C	19: 10,218,162 (GRCm38)	T428S	probably benign	Het
Naa35	A	G	13: 59,609,581 (GRCm38)	T257A	probably benign	Het
Obox5	T	A	7: 15,757,560 (GRCm38)	H8Q	probably damaging	Het
Or1j4	A	T	2: 36,850,360 (GRCm38)	I105L	probably benign	Het
Or51q1c	T	C	7: 104,004,025 (GRCm38)	V250A	probably damaging	Het
Or5h26	A	T	16: 59,167,839 (GRCm38)	F101L	probably benign	Het
Phldb2	G	T	16: 45,789,047 (GRCm38)	T732N	probably damaging	Het
Phyhip	G	T	14: 70,466,970 (GRCm38)	A210S	possibly damaging	Het
Pik3r4	A	G	9: 105,686,210 (GRCm38)	D1262G	probably damaging	Het
Pip	G	A	6: 41,849,864 (GRCm38)	E48K	possibly damaging	Het
Plk4	C	T	3: 40,813,547 (GRCm38)	L74F	probably damaging	Het
Prdm14	G	A	1: 13,118,807 (GRCm38)	R438W	probably damaging	Het
Rab19	G	A	6: 39,384,089 (GRCm38)	R57H	probably benign	Het
Rtl1	G	T	12: 109,590,227 (GRCm38)	P1726Q	probably damaging	Het
Sema6a	G	A	18: 47,290,045 (GRCm38)		probably null	Het
Skint6	A	T	4: 112,809,100 (GRCm38)	V1176D	possibly damaging	Het
Slc12a1	A	G	2: 125,226,028 (GRCm38)	I1012V	probably damaging	Het
Slc1a3	C	T	15: 8,636,237 (GRCm38)	M509I	probably benign	Het
Spata18	G	A	5: 73,666,881 (GRCm38)	G35E	probably benign	Het
Spata31h1	A	T	10: 82,284,369 (GRCm38)	I4269N	probably damaging	Het
Sspo	C	T	6: 48,455,401 (GRCm38)	P801L	possibly damaging	Het
Ugt2b37	C	T	5: 87,250,665 (GRCm38)	G304D	probably damaging	Het
Vmn2r25	A	T	6: 123,828,580 (GRCm38)		probably benign	Het
Xrcc6	C	A	15: 82,027,222 (GRCm38)		probably null	Het

Other mutations in Cfap65

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01107:Cfap65	APN	1	74,919,183 (GRCm38)	critical splice donor site	probably null
IGL01526:Cfap65	APN	1	74,911,078 (GRCm38)	missense	probably damaging	1.00
IGL01716:Cfap65	APN	1	74,927,194 (GRCm38)	missense	probably benign
IGL01780:Cfap65	APN	1	74,928,348 (GRCm38)	nonsense	probably null
IGL01993:Cfap65	APN	1	74,920,543 (GRCm38)	missense	probably damaging	1.00
IGL02164:Cfap65	APN	1	74,928,145 (GRCm38)	missense	possibly damaging	0.87
IGL02350:Cfap65	APN	1	74,928,348 (GRCm38)	nonsense	probably null
IGL02357:Cfap65	APN	1	74,928,348 (GRCm38)	nonsense	probably null
IGL02576:Cfap65	APN	1	74,903,458 (GRCm38)	missense	probably damaging	1.00
IGL02756:Cfap65	APN	1	74,905,080 (GRCm38)	missense	probably benign	0.00
IGL02792:Cfap65	APN	1	74,927,178 (GRCm38)	missense	probably damaging	1.00
IGL02874:Cfap65	APN	1	74,911,108 (GRCm38)	nonsense	probably null
IGL03101:Cfap65	APN	1	74,928,433 (GRCm38)	missense	possibly damaging	0.61
IGL03348:Cfap65	APN	1	74,927,619 (GRCm38)	missense	probably damaging	1.00
IGL03396:Cfap65	APN	1	74,904,642 (GRCm38)	missense	probably damaging	1.00
PIT4131001:Cfap65	UTSW	1	74,928,342 (GRCm38)	missense	probably benign	0.05
R0077:Cfap65	UTSW	1	74,931,918 (GRCm38)	missense	probably damaging	1.00
R0227:Cfap65	UTSW	1	74,931,958 (GRCm38)	nonsense	probably null
R0281:Cfap65	UTSW	1	74,927,071 (GRCm38)	missense	probably damaging	1.00
R0331:Cfap65	UTSW	1	74,929,302 (GRCm38)	missense	probably damaging	1.00
R0331:Cfap65	UTSW	1	74,929,301 (GRCm38)	missense	probably damaging	1.00
R0347:Cfap65	UTSW	1	74,926,444 (GRCm38)	missense	probably damaging	1.00
R0359:Cfap65	UTSW	1	74,920,601 (GRCm38)	missense	probably benign	0.00
R0361:Cfap65	UTSW	1	74,925,440 (GRCm38)	missense	probably damaging	1.00
R0465:Cfap65	UTSW	1	74,916,884 (GRCm38)	missense	possibly damaging	0.92
R0549:Cfap65	UTSW	1	74,918,444 (GRCm38)	missense	probably benign	0.01
R0646:Cfap65	UTSW	1	74,902,169 (GRCm38)	missense	probably benign	0.09
R0734:Cfap65	UTSW	1	74,918,887 (GRCm38)	missense	probably damaging	1.00
R0763:Cfap65	UTSW	1	74,904,682 (GRCm38)	missense	probably damaging	0.99
R0990:Cfap65	UTSW	1	74,921,519 (GRCm38)	missense	possibly damaging	0.60
R1079:Cfap65	UTSW	1	74,902,447 (GRCm38)	missense	probably damaging	0.98
R1079:Cfap65	UTSW	1	74,905,713 (GRCm38)	missense	probably damaging	0.99
R1083:Cfap65	UTSW	1	74,918,504 (GRCm38)	splice site	probably benign
R1159:Cfap65	UTSW	1	74,929,340 (GRCm38)	missense	probably damaging	1.00
R1282:Cfap65	UTSW	1	74,925,104 (GRCm38)	missense	probably benign	0.03
R1644:Cfap65	UTSW	1	74,917,175 (GRCm38)	missense	probably damaging	1.00
R1796:Cfap65	UTSW	1	74,918,948 (GRCm38)	missense	probably damaging	1.00
R1950:Cfap65	UTSW	1	74,907,660 (GRCm38)	missense	probably damaging	1.00
R2079:Cfap65	UTSW	1	74,917,199 (GRCm38)	missense	probably benign	0.30
R2132:Cfap65	UTSW	1	74,907,691 (GRCm38)	missense	probably damaging	1.00
R2136:Cfap65	UTSW	1	74,917,273 (GRCm38)	frame shift	probably null
R2219:Cfap65	UTSW	1	74,904,025 (GRCm38)	missense	probably damaging	1.00
R2220:Cfap65	UTSW	1	74,904,025 (GRCm38)	missense	probably damaging	1.00
R2291:Cfap65	UTSW	1	74,926,475 (GRCm38)	missense	probably damaging	1.00
R2417:Cfap65	UTSW	1	74,927,186 (GRCm38)	small insertion	probably benign
R3114:Cfap65	UTSW	1	74,927,132 (GRCm38)	missense	probably damaging	1.00
R4202:Cfap65	UTSW	1	74,920,542 (GRCm38)	missense	probably damaging	1.00
R4214:Cfap65	UTSW	1	74,927,681 (GRCm38)	missense	possibly damaging	0.93
R4254:Cfap65	UTSW	1	74,903,358 (GRCm38)	missense	probably benign	0.17
R4547:Cfap65	UTSW	1	74,907,612 (GRCm38)	missense	probably damaging	1.00
R4548:Cfap65	UTSW	1	74,907,612 (GRCm38)	missense	probably damaging	1.00
R4588:Cfap65	UTSW	1	74,904,056 (GRCm38)	missense	possibly damaging	0.92
R4657:Cfap65	UTSW	1	74,925,354 (GRCm38)	intron	probably benign
R4701:Cfap65	UTSW	1	74,918,908 (GRCm38)	missense	probably damaging	0.96
R4755:Cfap65	UTSW	1	74,928,361 (GRCm38)	missense	probably damaging	1.00
R4820:Cfap65	UTSW	1	74,927,632 (GRCm38)	missense	probably benign	0.06
R4831:Cfap65	UTSW	1	74,917,295 (GRCm38)	missense	possibly damaging	0.93
R4866:Cfap65	UTSW	1	74,925,557 (GRCm38)	missense	probably damaging	1.00
R4869:Cfap65	UTSW	1	74,919,261 (GRCm38)	missense	probably benign	0.00
R4881:Cfap65	UTSW	1	74,907,613 (GRCm38)	missense	probably damaging	1.00
R4884:Cfap65	UTSW	1	74,903,124 (GRCm38)	missense	possibly damaging	0.47
R4950:Cfap65	UTSW	1	74,906,336 (GRCm38)	nonsense	probably null
R5074:Cfap65	UTSW	1	74,922,978 (GRCm38)	missense	probably benign	0.04
R5083:Cfap65	UTSW	1	74,906,441 (GRCm38)	missense	probably damaging	1.00
R5164:Cfap65	UTSW	1	74,926,516 (GRCm38)	missense	probably damaging	1.00
R5268:Cfap65	UTSW	1	74,924,902 (GRCm38)	missense	probably benign	0.07
R5333:Cfap65	UTSW	1	74,903,175 (GRCm38)	missense	probably benign	0.03
R5417:Cfap65	UTSW	1	74,925,100 (GRCm38)	missense	probably damaging	1.00
R5582:Cfap65	UTSW	1	74,907,518 (GRCm38)	intron	probably benign
R5669:Cfap65	UTSW	1	74,924,968 (GRCm38)	missense	probably damaging	0.99
R6010:Cfap65	UTSW	1	74,923,031 (GRCm38)	missense	probably damaging	1.00
R6084:Cfap65	UTSW	1	74,920,405 (GRCm38)	missense	probably damaging	1.00
R6112:Cfap65	UTSW	1	74,903,139 (GRCm38)	missense	probably benign	0.14
R6425:Cfap65	UTSW	1	74,927,709 (GRCm38)	missense	probably benign	0.00
R6677:Cfap65	UTSW	1	74,904,685 (GRCm38)	missense	probably damaging	1.00
R6693:Cfap65	UTSW	1	74,917,286 (GRCm38)	missense	probably benign	0.00
R6838:Cfap65	UTSW	1	74,932,021 (GRCm38)	missense	probably benign	0.06
R6861:Cfap65	UTSW	1	74,925,115 (GRCm38)	missense	probably damaging	1.00
R6958:Cfap65	UTSW	1	74,931,899 (GRCm38)	missense	possibly damaging	0.58
R7134:Cfap65	UTSW	1	74,926,633 (GRCm38)	missense	probably benign	0.01
R7320:Cfap65	UTSW	1	74,926,604 (GRCm38)	missense	probably damaging	0.99
R7340:Cfap65	UTSW	1	74,921,583 (GRCm38)	missense	probably benign	0.07
R7426:Cfap65	UTSW	1	74,920,426 (GRCm38)	missense	possibly damaging	0.92
R7529:Cfap65	UTSW	1	74,926,610 (GRCm38)	missense	probably damaging	1.00
R7634:Cfap65	UTSW	1	74,902,434 (GRCm38)	missense	probably damaging	1.00
R7654:Cfap65	UTSW	1	74,933,144 (GRCm38)	missense	probably benign	0.44
R7704:Cfap65	UTSW	1	74,928,368 (GRCm38)	missense	probably benign	0.19
R7727:Cfap65	UTSW	1	74,926,625 (GRCm38)	missense	probably benign	0.00
R7895:Cfap65	UTSW	1	74,933,162 (GRCm38)	missense	probably benign	0.05
R8215:Cfap65	UTSW	1	74,910,743 (GRCm38)	missense	probably damaging	1.00
R8344:Cfap65	UTSW	1	74,928,044 (GRCm38)	missense	probably benign	0.01
R8345:Cfap65	UTSW	1	74,928,044 (GRCm38)	missense	probably benign	0.01
R8413:Cfap65	UTSW	1	74,917,169 (GRCm38)	nonsense	probably null
R8431:Cfap65	UTSW	1	74,928,044 (GRCm38)	missense	probably benign	0.01
R8432:Cfap65	UTSW	1	74,928,044 (GRCm38)	missense	probably benign	0.01
R8528:Cfap65	UTSW	1	74,905,937 (GRCm38)	missense	possibly damaging	0.88
R8809:Cfap65	UTSW	1	74,903,223 (GRCm38)	missense	probably benign	0.43
R8996:Cfap65	UTSW	1	74,902,188 (GRCm38)	missense	probably benign	0.11
R9020:Cfap65	UTSW	1	74,920,393 (GRCm38)	missense	probably damaging	1.00
R9043:Cfap65	UTSW	1	74,904,688 (GRCm38)	missense	possibly damaging	0.88
R9127:Cfap65	UTSW	1	74,919,351 (GRCm38)	splice site	probably benign
R9187:Cfap65	UTSW	1	74,917,358 (GRCm38)	missense	probably benign	0.00
R9210:Cfap65	UTSW	1	74,920,408 (GRCm38)	missense	probably benign
R9212:Cfap65	UTSW	1	74,920,408 (GRCm38)	missense	probably benign
R9273:Cfap65	UTSW	1	74,921,610 (GRCm38)	missense	probably benign	0.00
R9454:Cfap65	UTSW	1	74,905,051 (GRCm38)	missense	probably damaging	1.00
R9514:Cfap65	UTSW	1	74,906,309 (GRCm38)	critical splice donor site	probably null
R9595:Cfap65	UTSW	1	74,907,378 (GRCm38)	missense	probably damaging	1.00
R9721:Cfap65	UTSW	1	74,919,342 (GRCm38)	missense	probably benign	0.16
R9742:Cfap65	UTSW	1	74,904,681 (GRCm38)	missense	probably benign	0.08
RF009:Cfap65	UTSW	1	74,905,647 (GRCm38)	missense	probably damaging	1.00
Z1176:Cfap65	UTSW	1	74,910,747 (GRCm38)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- GCCTGCCACAGAAAGTGATAGAACC -3'
(R):5'- AGTGTGCCTGGCCTATCTATGTCC -3'

Sequencing Primer
(F):5'- TAGTAGACCTGGTCTGACCCAAG -3'
(R):5'- GTCCTTATGACTGGGCAGCTAC -3'

Posted On

2013-04-16