Incidental Mutation 'R2571:H2-T5'
ID 252606
Institutional Source Beutler Lab
Gene Symbol H2-T5
Ensembl Gene
Gene Name histocompatibility 2, T region locus 5
Synonyms Gm8909, H2-T26, H-2T5
MMRRC Submission 040429-MU
Accession Numbers
Essential gene? Not available question?
Stock # R2571 (G1)
Quality Score 225
Status Not validated
Chromosome 17
Chromosomal Location 36475335-36479429 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) C to T at 36478553 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Glycine to Arginine at position 132 (G132R)
Ref Sequence ENSEMBL: ENSMUSP00000036092 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000040467] [ENSMUST00000097335] [ENSMUST00000173353]
AlphaFold no structure available at present
Predicted Effect possibly damaging
Transcript: ENSMUST00000040467
AA Change: G132R

PolyPhen 2 Score 0.664 (Sensitivity: 0.86; Specificity: 0.91)
SMART Domains Protein: ENSMUSP00000036092
Gene: ENSMUSG00000073402
AA Change: G132R

DomainStartEndE-ValueType
signal peptide 1 21 N/A INTRINSIC
Pfam:MHC_I 26 204 5.9e-96 PFAM
IGc1 223 294 8.23e-23 SMART
transmembrane domain 310 332 N/A INTRINSIC
Predicted Effect noncoding transcript
Transcript: ENSMUST00000090537
SMART Domains Protein: ENSMUSP00000088025
Gene: ENSMUSG00000038311

DomainStartEndE-ValueType
SCOP:d2sqca2 105 173 2e-3 SMART
Predicted Effect possibly damaging
Transcript: ENSMUST00000097335
AA Change: G160R

PolyPhen 2 Score 0.569 (Sensitivity: 0.88; Specificity: 0.91)
SMART Domains Protein: ENSMUSP00000094947
Gene: ENSMUSG00000073402
AA Change: G160R

DomainStartEndE-ValueType
signal peptide 1 21 N/A INTRINSIC
Pfam:MHC_I 54 232 7.3e-96 PFAM
IGc1 251 322 8.23e-23 SMART
transmembrane domain 338 360 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000173353
AA Change: G160R

PolyPhen 2 Score 0.387 (Sensitivity: 0.90; Specificity: 0.89)
SMART Domains Protein: ENSMUSP00000133663
Gene: ENSMUSG00000073402
AA Change: G160R

DomainStartEndE-ValueType
signal peptide 1 21 N/A INTRINSIC
Pfam:MHC_I 54 232 3.9e-93 PFAM
IGc1 251 322 8.23e-23 SMART
transmembrane domain 338 360 N/A INTRINSIC
Predicted Effect noncoding transcript
Transcript: ENSMUST00000173625
Predicted Effect noncoding transcript
Transcript: ENSMUST00000173648
Predicted Effect noncoding transcript
Transcript: ENSMUST00000174693
Coding Region Coverage
  • 1x: 99.2%
  • 3x: 98.6%
  • 10x: 97.3%
  • 20x: 95.2%
Validation Efficiency
Allele List at MGI
Other mutations in this stock
Total: 71 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abca12 T C 1: 71,289,044 (GRCm39) N2438S probably benign Het
Ago3 G A 4: 126,257,604 (GRCm39) R476W probably damaging Het
Akap8 T C 17: 32,534,429 (GRCm39) E339G probably damaging Het
Apba2 T C 7: 64,395,498 (GRCm39) V658A probably damaging Het
Bcl3 T C 7: 19,543,452 (GRCm39) D338G probably damaging Het
Bpnt2 C T 4: 4,778,192 (GRCm39) probably null Het
Ccdc138 T C 10: 58,349,044 (GRCm39) Y197H probably benign Het
Ccdc162 T A 10: 41,428,393 (GRCm39) Q499L probably damaging Het
Ccser1 G A 6: 61,399,944 (GRCm39) C21Y probably damaging Het
Chil6 A T 3: 106,297,709 (GRCm39) Y229* probably null Het
Cntnap5a C T 1: 116,112,092 (GRCm39) R461C probably damaging Het
Col19a1 T A 1: 24,413,712 (GRCm39) R407S unknown Het
Crlf3 A T 11: 79,938,339 (GRCm39) F433I probably benign Het
Csmd3 CCTTTGCGCTT CCTT 15: 47,604,632 (GRCm39) probably null Het
Dnah10 A T 5: 124,852,542 (GRCm39) R1867W probably damaging Het
Dsg3 T C 18: 20,673,062 (GRCm39) V911A probably benign Het
Dzip3 T C 16: 48,792,581 (GRCm39) probably null Het
Evpl T C 11: 116,128,795 (GRCm39) Q10R unknown Het
Glra3 C T 8: 56,563,516 (GRCm39) A337V probably benign Het
Hcfc2 T C 10: 82,544,857 (GRCm39) F163S probably damaging Het
Hells T C 19: 38,948,177 (GRCm39) V701A possibly damaging Het
Helz A G 11: 107,504,778 (GRCm39) T422A probably benign Het
Hhat G A 1: 192,235,330 (GRCm39) T442I probably damaging Het
Hmces A T 6: 87,913,202 (GRCm39) Q319L possibly damaging Het
Ighv1-62-1 T A 12: 115,350,377 (GRCm39) T97S probably damaging Het
Kcne2 C T 16: 92,093,800 (GRCm39) T109I probably damaging Het
Kcnq1 T G 7: 142,661,433 (GRCm39) L113R probably benign Het
Kdm5d T C Y: 940,932 (GRCm39) S1106P probably benign Het
Kel C A 6: 41,665,001 (GRCm39) A588S possibly damaging Het
Kmt2e T A 5: 23,706,885 (GRCm39) F1483I probably benign Het
Krt4 T A 15: 101,829,692 (GRCm39) N279Y probably damaging Het
Lama4 T A 10: 38,918,671 (GRCm39) M384K possibly damaging Het
Lepr C T 4: 101,625,369 (GRCm39) T508I possibly damaging Het
Lypd10 A G 7: 24,412,819 (GRCm39) I76V probably benign Het
Map1lc3b T A 8: 122,320,213 (GRCm39) probably null Het
Me1 T C 9: 86,536,751 (GRCm39) H108R probably damaging Het
Mindy4 T C 6: 55,261,770 (GRCm39) S560P probably damaging Het
Mmp3 T A 9: 7,451,844 (GRCm39) I394N possibly damaging Het
Mmrn2 T C 14: 34,124,896 (GRCm39) S826P probably damaging Het
Or13n4 T A 7: 106,422,933 (GRCm39) M267L probably benign Het
Osbpl7 T C 11: 96,945,667 (GRCm39) L138P probably damaging Het
Pcdhga11 G A 18: 37,889,921 (GRCm39) E310K probably damaging Het
Pcif1 A G 2: 164,726,131 (GRCm39) D39G probably damaging Het
Ppp1r21 C T 17: 88,852,810 (GRCm39) T63I probably benign Het
Prickle2 T C 6: 92,682,381 (GRCm39) Q25R probably benign Het
Ptk2 A G 15: 73,103,768 (GRCm39) L94P probably damaging Het
Ptprg T C 14: 12,122,135 (GRCm38) F333S probably benign Het
Rag2 T A 2: 101,460,312 (GRCm39) H207Q probably damaging Het
Rps6ka1 G T 4: 133,587,923 (GRCm39) probably null Het
Rps6ka4 G T 19: 6,815,471 (GRCm39) H174Q probably damaging Het
Rreb1 C A 13: 38,083,613 (GRCm39) T92K probably damaging Het
Ryr1 A T 7: 28,708,987 (GRCm39) M4793K unknown Het
Ryr1 T A 7: 28,735,551 (GRCm39) M4076L possibly damaging Het
Sec16a A C 2: 26,329,343 (GRCm39) S891A probably benign Het
Sgsh A G 11: 119,241,340 (GRCm39) Y132H probably damaging Het
Sos2 T A 12: 69,682,492 (GRCm39) E242V possibly damaging Het
Spata31d1c G T 13: 65,184,198 (GRCm39) R580L probably damaging Het
Spata9 C A 13: 76,115,880 (GRCm39) probably benign Het
Tead2 T A 7: 44,875,194 (GRCm39) V202E probably damaging Het
Thada T C 17: 84,762,068 (GRCm39) K168E probably damaging Het
Tmem64 T C 4: 15,266,718 (GRCm39) I256T probably damaging Het
Tra2a G T 6: 49,229,421 (GRCm39) probably benign Het
Trim30a T A 7: 104,078,533 (GRCm39) N181I possibly damaging Het
Ttc13 A C 8: 125,410,538 (GRCm39) Y372D probably damaging Het
Vit T C 17: 78,894,174 (GRCm39) V192A probably benign Het
Vmn2r69 T C 7: 85,064,764 (GRCm39) T41A probably benign Het
Vps13d C A 4: 144,875,706 (GRCm39) K1600N probably benign Het
Xpnpep3 A T 15: 81,335,127 (GRCm39) H420L probably damaging Het
Zfp322a A G 13: 23,540,614 (GRCm39) L376P probably damaging Het
Zfp619 T C 7: 39,186,595 (GRCm39) L875P probably damaging Het
Zic5 T A 14: 122,696,890 (GRCm39) Q575L unknown Het
Other mutations in H2-T5
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00157:H2-T5 APN 17 36,476,246 (GRCm39) critical splice donor site probably null
IGL00534:H2-T5 APN 17 36,479,021 (GRCm39) missense probably damaging 1.00
IGL02312:H2-T5 APN 17 36,476,299 (GRCm39) missense probably benign 0.01
IGL03346:H2-T5 APN 17 36,479,001 (GRCm39) missense probably damaging 1.00
H8441:H2-T5 UTSW 17 36,478,874 (GRCm39) missense possibly damaging 0.84
R0005:H2-T5 UTSW 17 36,473,084 (GRCm39) unclassified probably benign
R0078:H2-T5 UTSW 17 36,476,353 (GRCm39) missense possibly damaging 0.95
R0211:H2-T5 UTSW 17 36,478,899 (GRCm39) missense probably damaging 1.00
R0211:H2-T5 UTSW 17 36,478,899 (GRCm39) missense probably damaging 1.00
R0233:H2-T5 UTSW 17 36,478,361 (GRCm39) missense probably benign 0.42
R0233:H2-T5 UTSW 17 36,478,361 (GRCm39) missense probably benign 0.42
R0553:H2-T5 UTSW 17 36,478,949 (GRCm39) missense probably damaging 1.00
R0670:H2-T5 UTSW 17 36,478,990 (GRCm39) missense possibly damaging 0.74
R1718:H2-T5 UTSW 17 36,472,676 (GRCm39) unclassified probably benign
R1937:H2-T5 UTSW 17 36,478,899 (GRCm39) missense probably damaging 1.00
R4393:H2-T5 UTSW 17 36,472,861 (GRCm39) unclassified probably benign
R4396:H2-T5 UTSW 17 36,472,861 (GRCm39) unclassified probably benign
R4409:H2-T5 UTSW 17 36,476,742 (GRCm39) missense possibly damaging 0.53
R4505:H2-T5 UTSW 17 36,472,372 (GRCm39) unclassified probably benign
R4506:H2-T5 UTSW 17 36,472,372 (GRCm39) unclassified probably benign
R4507:H2-T5 UTSW 17 36,472,372 (GRCm39) unclassified probably benign
R4579:H2-T5 UTSW 17 36,472,649 (GRCm39) unclassified probably benign
R4684:H2-T5 UTSW 17 36,476,750 (GRCm39) missense possibly damaging 0.90
R4740:H2-T5 UTSW 17 36,478,448 (GRCm39) missense probably damaging 1.00
R5087:H2-T5 UTSW 17 36,476,308 (GRCm39) nonsense probably null
R5103:H2-T5 UTSW 17 36,472,577 (GRCm39) unclassified probably benign
R5275:H2-T5 UTSW 17 36,472,567 (GRCm39) splice site probably null
R5425:H2-T5 UTSW 17 36,479,377 (GRCm39) missense probably damaging 1.00
R6155:H2-T5 UTSW 17 36,478,399 (GRCm39) missense possibly damaging 0.93
R6727:H2-T5 UTSW 17 36,476,622 (GRCm39) missense probably damaging 1.00
R6852:H2-T5 UTSW 17 36,478,965 (GRCm39) missense possibly damaging 0.52
R7985:H2-T5 UTSW 17 36,478,445 (GRCm39) missense probably damaging 1.00
R8316:H2-T5 UTSW 17 36,479,154 (GRCm39) missense unknown
R8872:H2-T5 UTSW 17 36,476,293 (GRCm39) missense probably benign 0.00
R9046:H2-T5 UTSW 17 36,476,035 (GRCm39) critical splice donor site probably null
R9296:H2-T5 UTSW 17 36,479,169 (GRCm39) missense unknown
Z1177:H2-T5 UTSW 17 36,476,604 (GRCm39) missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- TCTTCTTCCCCAGGACTGAG -3'
(R):5'- AAGTCTAGGTTCGGGAGCAG -3'

Sequencing Primer
(F):5'- TCCCGAGCTCCAGGTATCTG -3'
(R):5'- GTTCGGGAGCAGAACCAACC -3'
Posted On 2014-12-04