Mutagenetix > Incidental Mutation

Incidental Mutation 'R2511:Kcnq5'

252817

Institutional Source

Beutler Lab

Gene Symbol

Kcnq5

Ensembl Gene

ENSMUSG00000028033

Gene Name

potassium voltage-gated channel, subfamily Q, member 5

Synonyms

9230107O05Rik, D1Mgi1

MMRRC Submission

040417-MU

Accession Numbers

Essential gene?

Possibly non essential (E-score: 0.313) question?

Stock #

R2511 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

21468627-22032166 bp(-) (GRCm39)

Type of Mutation

nonsense

DNA Base Change (assembly)

T to A at 21576006 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Arginine to Stop codon at position 233 (R233*)

Ref Sequence

ENSEMBL: ENSMUSP00000134076 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000029667] [ENSMUST00000115300] [ENSMUST00000173058] [ENSMUST00000173404] [ENSMUST00000174183]

AlphaFold

Q9JK45

Predicted Effect

probably null
Transcript: ENSMUST00000029667
AA Change: R233*

SMART Domains

Protein: ENSMUSP00000029667
Gene: ENSMUSG00000028033
AA Change: R233*

Domain	Start	End	E-Value	Type
low complexity region	6	36	N/A	INTRINSIC
low complexity region	52	82	N/A	INTRINSIC
transmembrane domain	128	150	N/A	INTRINSIC
Pfam:Ion_trans	163	347	1.7e-26	PFAM
Pfam:Ion_trans_2	272	352	5.3e-15	PFAM
Pfam:KCNQ_channel	446	648	3.6e-95	PFAM
low complexity region	848	858	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000115299

Predicted Effect

probably null
Transcript: ENSMUST00000115300
AA Change: R233*

SMART Domains

Protein: ENSMUSP00000110955
Gene: ENSMUSG00000028033
AA Change: R233*

Domain	Start	End	E-Value	Type
low complexity region	6	36	N/A	INTRINSIC
low complexity region	52	82	N/A	INTRINSIC
Pfam:Ion_trans	126	359	4.1e-28	PFAM
Pfam:Ion_trans_2	272	352	3.3e-16	PFAM
Pfam:KCNQ_channel	467	661	1.8e-98	PFAM
low complexity region	867	877	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000173058
AA Change: R233*

SMART Domains

Protein: ENSMUSP00000134166
Gene: ENSMUSG00000028033
AA Change: R233*

Domain	Start	End	E-Value	Type
low complexity region	6	36	N/A	INTRINSIC
low complexity region	52	82	N/A	INTRINSIC
transmembrane domain	128	150	N/A	INTRINSIC
Pfam:Ion_trans	163	347	2e-26	PFAM
Pfam:Ion_trans_2	272	352	3.1e-15	PFAM
Pfam:KCNQ_channel	405	538	8e-64	PFAM
low complexity region	738	748	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000173404
AA Change: R233*

SMART Domains

Protein: ENSMUSP00000134076
Gene: ENSMUSG00000028033
AA Change: R233*

Domain	Start	End	E-Value	Type
low complexity region	6	36	N/A	INTRINSIC
low complexity region	52	82	N/A	INTRINSIC
transmembrane domain	128	150	N/A	INTRINSIC
Pfam:Ion_trans	163	347	2.4e-26	PFAM
Pfam:Ion_trans_2	272	352	3.6e-15	PFAM
Pfam:KCNQ_channel	437	639	2e-95	PFAM
low complexity region	839	849	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000174183

SMART Domains

Protein: ENSMUSP00000134389
Gene: ENSMUSG00000028033

Domain	Start	End	E-Value	Type
low complexity region	6	36	N/A	INTRINSIC
low complexity region	52	82	N/A	INTRINSIC
transmembrane domain	126	148	N/A	INTRINSIC

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.2%
20x: 94.7%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene is a member of the KCNQ potassium channel gene family that is differentially expressed in subregions of the brain and in skeletal muscle. The protein encoded by this gene yields currents that activate slowly with depolarization and can form heteromeric channels with the protein encoded by the KCNQ3 gene. Currents expressed from this protein have voltage dependences and inhibitor sensitivities in common with M-currents. They are also inhibited by M1 muscarinic receptor activation. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, May 2009]
PHENOTYPE: Mice homozygous for a dominant negative knock-in mutation in this gene exhibit partial prenatal lethality and abnormal afterhyperpolarization in the in the CA3 area of hippocampus. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 103 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
9330159F19Rik	T	A	10: 29,097,902 (GRCm39)	C100S	probably damaging	Het
Abcc8	C	T	7: 45,800,204 (GRCm39)	R526H	probably damaging	Het
Acad10	G	A	5: 121,769,630 (GRCm39)	P609S	probably benign	Het
Acod1	A	T	14: 103,288,775 (GRCm39)	D95V	probably damaging	Het
Acsm5	A	T	7: 119,129,677 (GRCm39)	I130F	possibly damaging	Het
Ago4	A	T	4: 126,410,864 (GRCm39)	D208E	probably damaging	Het
Agrn	A	T	4: 156,250,881 (GRCm39)		probably null	Het
Ankar	A	T	1: 72,697,853 (GRCm39)	I791K	probably damaging	Het
Ano10	A	G	9: 122,088,011 (GRCm39)	V364A	probably damaging	Het
Arhgap9	T	C	10: 127,164,854 (GRCm39)		probably null	Het
Arsi	G	A	18: 61,049,666 (GRCm39)	C183Y	probably damaging	Het
Ascl2	T	G	7: 142,521,953 (GRCm39)	E97A	probably damaging	Het
Bcl2a1a	C	T	9: 88,839,506 (GRCm39)	R135W	probably damaging	Het
Bms1	C	T	6: 118,368,114 (GRCm39)		probably null	Het
Bysl	T	A	17: 47,915,260 (GRCm39)	T163S	probably benign	Het
Card10	A	G	15: 78,664,473 (GRCm39)	I821T	probably benign	Het
Cc2d2a	A	T	5: 43,892,737 (GRCm39)	Q1433L	probably damaging	Het
Cchcr1	T	C	17: 35,841,410 (GRCm39)	S809P	probably benign	Het
Ccz1	G	T	5: 143,949,815 (GRCm39)	T70K	probably damaging	Het
Cdc25c	G	C	18: 34,871,292 (GRCm39)	L275V	probably damaging	Het
Cep164	A	T	9: 45,686,547 (GRCm39)	L729Q	probably damaging	Het
Clcn6	A	G	4: 148,101,951 (GRCm39)		probably null	Het
Clcn7	T	A	17: 25,374,420 (GRCm39)	V507E	probably damaging	Het
Cracdl	T	C	1: 37,664,381 (GRCm39)	M506V	probably benign	Het
Ctso	A	C	3: 81,840,041 (GRCm39)	T24P	probably damaging	Het
Dis3l2	A	T	1: 86,917,980 (GRCm39)	N543I	probably benign	Het
Dnah12	A	T	14: 26,491,907 (GRCm39)	Y1114F	possibly damaging	Het
Emx1	A	G	6: 85,181,033 (GRCm39)	D250G	probably benign	Het
Epha4	G	A	1: 77,488,339 (GRCm39)	A47V	possibly damaging	Het
Fam149b	A	C	14: 20,428,524 (GRCm39)	N341T	probably damaging	Het
Fsip2	A	G	2: 82,782,001 (GRCm39)	K62R	probably damaging	Het
Fsip2	T	C	2: 82,816,782 (GRCm39)	S4172P	probably benign	Het
Gbp3	A	G	3: 142,276,343 (GRCm39)	R480G	probably benign	Het
Get3	A	G	8: 85,746,395 (GRCm39)	V151A	possibly damaging	Het
Gja8	T	G	3: 96,827,033 (GRCm39)	T210P	probably damaging	Het
Gm5431	T	A	11: 48,779,536 (GRCm39)	N740I	probably benign	Het
Gm9930	T	C	10: 9,410,446 (GRCm39)		noncoding transcript	Het
Gstt4	C	T	10: 75,650,959 (GRCm39)	C221Y	probably benign	Het
Gzmg	A	T	14: 56,395,832 (GRCm39)	D42E	probably benign	Het
Hoxd12	G	A	2: 74,505,815 (GRCm39)	A129T	possibly damaging	Het
Hs2st1	G	A	3: 144,275,691 (GRCm39)		probably benign	Het
Ifnlr1	G	T	4: 135,432,559 (GRCm39)	D332Y	probably damaging	Het
Igsf10	T	C	3: 59,239,287 (GRCm39)	D298G	probably damaging	Het
Irf1	T	C	11: 53,664,617 (GRCm39)	V108A	probably damaging	Het
Jsrp1	C	G	10: 80,648,140 (GRCm39)	S36T	probably benign	Het
Kif7	T	C	7: 79,352,012 (GRCm39)	K917E	probably damaging	Het
Krt7	A	C	15: 101,310,538 (GRCm39)	I62L	probably benign	Het
Lifr	A	G	15: 7,196,397 (GRCm39)	T194A	probably benign	Het
Ltbp2	T	C	12: 84,851,183 (GRCm39)		probably null	Het
Maco1	A	G	4: 134,531,699 (GRCm39)	S657P	probably damaging	Het
Man2c1	A	G	9: 57,048,672 (GRCm39)		probably null	Het
Met	T	C	6: 17,491,966 (GRCm39)	S243P	probably damaging	Het
Mllt10	C	A	2: 18,069,935 (GRCm39)	D30E	possibly damaging	Het
Mre11a	A	C	9: 14,707,065 (GRCm39)		probably null	Het
Mroh9	A	G	1: 162,866,514 (GRCm39)	S710P	probably benign	Het
Mvk	C	A	5: 114,588,459 (GRCm39)	Y116*	probably null	Het
Myh1	A	G	11: 67,096,423 (GRCm39)	I301V	probably benign	Het
Ncf1	T	C	5: 134,254,552 (GRCm39)	D184G	probably damaging	Het
Nxpe4	T	C	9: 48,304,533 (GRCm39)	F207L	probably damaging	Het
Or2ag18	G	T	7: 106,405,168 (GRCm39)	P167H	probably damaging	Het
Or2y1b	T	G	11: 49,209,048 (GRCm39)	L225R	probably damaging	Het
Or4k51	T	A	2: 111,584,661 (GRCm39)	N22K	probably benign	Het
Or52b1	A	T	7: 104,978,817 (GRCm39)	I194N	probably damaging	Het
Or5b24	T	A	19: 12,912,537 (GRCm39)	M145K	possibly damaging	Het
Or5w14	T	C	2: 87,541,392 (GRCm39)	N286S	probably damaging	Het
Pcdh1	G	A	18: 38,332,532 (GRCm39)	T296M	possibly damaging	Het
Pcdh15	A	G	10: 74,481,828 (GRCm39)	D391G	possibly damaging	Het
Pcdha7	C	A	18: 37,107,786 (GRCm39)	D270E	probably damaging	Het
Pgam1	C	A	19: 41,904,315 (GRCm39)	S137R	probably damaging	Het
Pitpnm2	T	C	5: 124,274,389 (GRCm39)	E240G	probably damaging	Het
Plce1	T	G	19: 38,748,498 (GRCm39)	I1729S	probably damaging	Het
Plppr4	G	T	3: 117,125,355 (GRCm39)	N161K	probably damaging	Het
Pramel27	G	A	4: 143,578,561 (GRCm39)	V274I	probably benign	Het
Prkce	T	A	17: 86,932,754 (GRCm39)	I578N	probably damaging	Het
Prss58	A	C	6: 40,874,734 (GRCm39)	S36A	probably damaging	Het
Ptprm	T	C	17: 67,000,773 (GRCm39)	H1128R	probably damaging	Het
Rgs9	T	C	11: 109,159,798 (GRCm39)	Y178C	probably benign	Het
Rubcn	T	C	16: 32,667,624 (GRCm39)	N179S	probably damaging	Het
Sh3bp1	C	T	15: 78,795,706 (GRCm39)	P612S	probably damaging	Het
Sh3bp5	G	A	14: 31,133,586 (GRCm39)	T82M	probably damaging	Het
Shank2	A	G	7: 143,965,314 (GRCm39)	Y974C	probably damaging	Het
Slc9c1	T	C	16: 45,365,099 (GRCm39)	I144T	possibly damaging	Het
Slf2	T	C	19: 44,930,045 (GRCm39)	I374T	possibly damaging	Het
Snx13	A	G	12: 35,188,080 (GRCm39)	D786G	probably benign	Het
Spcs3	A	G	8: 54,976,389 (GRCm39)	V151A	possibly damaging	Het
Sstr2	A	T	11: 113,515,749 (GRCm39)	I223F	probably damaging	Het
Stac3	T	C	10: 127,339,787 (GRCm39)		probably null	Het
Tas1r2	A	G	4: 139,387,162 (GRCm39)	N207S	probably damaging	Het
Tectb	C	G	19: 55,169,431 (GRCm39)		probably benign	Het
Tgm5	T	C	2: 120,907,429 (GRCm39)	E98G	possibly damaging	Het
Tktl2	A	G	8: 66,965,504 (GRCm39)	E354G	probably benign	Het
Tmem94	G	A	11: 115,682,787 (GRCm39)	R608H	probably damaging	Het
Tnrc6a	G	A	7: 122,770,315 (GRCm39)	V702I	probably damaging	Het
Trappc10	A	G	10: 78,047,357 (GRCm39)	S380P	possibly damaging	Het
Trim24	G	A	6: 37,880,587 (GRCm39)		probably null	Het
Ugt1a2	A	G	1: 88,128,846 (GRCm39)	Y163C	probably damaging	Het
Vmn1r215	A	G	13: 23,260,343 (GRCm39)	I128V	probably benign	Het
Vmn2r50	T	A	7: 9,781,640 (GRCm39)	E368D	possibly damaging	Het
Vmn2r59	T	C	7: 41,693,190 (GRCm39)	N470S	probably damaging	Het
Vps45	T	C	3: 95,948,757 (GRCm39)	T333A	probably benign	Het
Zbtb44	T	A	9: 30,965,539 (GRCm39)	D316E	probably damaging	Het
Zdhhc1	C	T	8: 106,210,190 (GRCm39)	V76M	probably benign	Het
Zfp235	T	C	7: 23,841,549 (GRCm39)	F656S	probably damaging	Het

Other mutations in Kcnq5

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00864:Kcnq5	APN	1	21,575,987 (GRCm39)	missense	probably damaging	1.00
IGL01603:Kcnq5	APN	1	21,575,564 (GRCm39)	missense	possibly damaging	0.94
IGL02326:Kcnq5	APN	1	21,472,816 (GRCm39)	missense	probably benign	0.17
IGL02624:Kcnq5	APN	1	21,472,654 (GRCm39)	missense	probably benign	0.27
IGL03151:Kcnq5	APN	1	21,605,293 (GRCm39)	missense	probably damaging	1.00
IGL03367:Kcnq5	APN	1	21,473,289 (GRCm39)	missense	probably damaging	1.00
PIT1430001:Kcnq5	UTSW	1	21,605,405 (GRCm39)	missense	probably damaging	1.00
R0705:Kcnq5	UTSW	1	21,605,401 (GRCm39)	missense	probably damaging	1.00
R0798:Kcnq5	UTSW	1	22,031,399 (GRCm39)	splice site	probably null
R1263:Kcnq5	UTSW	1	21,549,602 (GRCm39)	missense	probably damaging	1.00
R1445:Kcnq5	UTSW	1	21,475,248 (GRCm39)	missense	probably benign	0.01
R1465:Kcnq5	UTSW	1	21,539,692 (GRCm39)	critical splice donor site	probably null
R1465:Kcnq5	UTSW	1	21,539,692 (GRCm39)	critical splice donor site	probably null
R1497:Kcnq5	UTSW	1	21,472,610 (GRCm39)	missense	possibly damaging	0.82
R1515:Kcnq5	UTSW	1	21,472,905 (GRCm39)	missense	probably benign	0.01
R1610:Kcnq5	UTSW	1	21,527,685 (GRCm39)	missense	probably damaging	1.00
R1835:Kcnq5	UTSW	1	21,536,611 (GRCm39)	missense	probably benign	0.04
R1999:Kcnq5	UTSW	1	21,472,428 (GRCm39)	missense	probably null	0.18
R2060:Kcnq5	UTSW	1	21,531,821 (GRCm39)	missense	probably benign	0.06
R2145:Kcnq5	UTSW	1	21,575,573 (GRCm39)	missense	probably damaging	0.96
R2314:Kcnq5	UTSW	1	21,549,595 (GRCm39)	splice site	probably null
R2697:Kcnq5	UTSW	1	21,549,656 (GRCm39)	missense	probably damaging	1.00
R2886:Kcnq5	UTSW	1	21,539,771 (GRCm39)	nonsense	probably null
R2889:Kcnq5	UTSW	1	21,472,526 (GRCm39)	missense	probably damaging	0.98
R4176:Kcnq5	UTSW	1	21,605,392 (GRCm39)	missense	probably damaging	1.00
R4609:Kcnq5	UTSW	1	21,475,292 (GRCm39)	splice site	probably null
R4720:Kcnq5	UTSW	1	21,473,274 (GRCm39)	missense	probably damaging	0.96
R4904:Kcnq5	UTSW	1	21,494,324 (GRCm39)	missense	probably damaging	0.98
R5184:Kcnq5	UTSW	1	21,472,711 (GRCm39)	missense	probably damaging	1.00
R5268:Kcnq5	UTSW	1	21,575,949 (GRCm39)	missense	probably damaging	1.00
R5373:Kcnq5	UTSW	1	22,031,795 (GRCm39)	missense	unknown
R5397:Kcnq5	UTSW	1	21,476,080 (GRCm39)	missense	probably damaging	1.00
R5473:Kcnq5	UTSW	1	21,527,626 (GRCm39)	critical splice donor site	probably null
R5490:Kcnq5	UTSW	1	21,549,692 (GRCm39)	missense	probably damaging	1.00
R5946:Kcnq5	UTSW	1	21,575,931 (GRCm39)	missense	probably damaging	1.00
R6941:Kcnq5	UTSW	1	21,476,068 (GRCm39)	missense	probably damaging	1.00
R6962:Kcnq5	UTSW	1	21,576,017 (GRCm39)	missense	probably damaging	1.00
R7201:Kcnq5	UTSW	1	21,473,099 (GRCm39)	missense	possibly damaging	0.93
R7238:Kcnq5	UTSW	1	21,472,526 (GRCm39)	missense	probably benign	0.39
R7375:Kcnq5	UTSW	1	21,539,710 (GRCm39)	missense	possibly damaging	0.82
R7584:Kcnq5	UTSW	1	21,472,545 (GRCm39)	missense	probably benign
R7780:Kcnq5	UTSW	1	22,031,555 (GRCm39)	missense	probably benign	0.43
R8043:Kcnq5	UTSW	1	21,549,644 (GRCm39)	missense	probably damaging	1.00
R8103:Kcnq5	UTSW	1	21,549,620 (GRCm39)	missense	possibly damaging	0.89
R8267:Kcnq5	UTSW	1	21,575,609 (GRCm39)	missense	probably damaging	1.00
R8363:Kcnq5	UTSW	1	21,549,648 (GRCm39)	missense	probably damaging	1.00
R8364:Kcnq5	UTSW	1	21,549,648 (GRCm39)	missense	probably damaging	1.00
R8370:Kcnq5	UTSW	1	21,549,648 (GRCm39)	missense	probably damaging	1.00
R8371:Kcnq5	UTSW	1	21,549,648 (GRCm39)	missense	probably damaging	1.00
R8372:Kcnq5	UTSW	1	21,549,648 (GRCm39)	missense	probably damaging	1.00
R8374:Kcnq5	UTSW	1	21,549,648 (GRCm39)	missense	probably damaging	1.00
R8414:Kcnq5	UTSW	1	21,549,648 (GRCm39)	missense	probably damaging	1.00
R8528:Kcnq5	UTSW	1	21,549,648 (GRCm39)	missense	probably damaging	1.00
R8542:Kcnq5	UTSW	1	21,549,648 (GRCm39)	missense	probably damaging	1.00
R8669:Kcnq5	UTSW	1	21,476,050 (GRCm39)	missense	probably damaging	1.00
R8723:Kcnq5	UTSW	1	21,575,591 (GRCm39)	missense	probably damaging	1.00
R9000:Kcnq5	UTSW	1	21,557,483 (GRCm39)	missense	probably damaging	1.00
R9020:Kcnq5	UTSW	1	21,539,463 (GRCm39)	intron	probably benign
R9152:Kcnq5	UTSW	1	21,539,692 (GRCm39)	critical splice donor site	probably null
R9426:Kcnq5	UTSW	1	21,473,118 (GRCm39)	missense	probably benign
Z1088:Kcnq5	UTSW	1	21,527,753 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- ATCTGGAGCAACTGCCTGTG -3'
(R):5'- TTCTGGTAGGGGAAACTGAGC -3'

Sequencing Primer
(F):5'- AGCAACTGCCTGTGTCAAG -3'
(R):5'- GGAAACTGAGCACAGAGTTCTG -3'

Posted On

2014-12-04