Incidental Mutation 'R2870:Ccdc59'
ID 253606
Institutional Source Beutler Lab
Gene Symbol Ccdc59
Ensembl Gene ENSMUSG00000019897
Gene Name coiled-coil domain containing 59
Synonyms 2300004H16Rik, D10Ertd718e
MMRRC Submission 040458-MU
Accession Numbers
Essential gene? Essential (E-score: 1.000) question?
Stock # R2870 (G1)
Quality Score 225
Status Not validated
Chromosome 10
Chromosomal Location 105677340-105683371 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to T at 105677388 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Lysine to Methionine at position 9 (K9M)
Ref Sequence ENSEMBL: ENSMUSP00000020049 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000020049] [ENSMUST00000046638] [ENSMUST00000176040] [ENSMUST00000176924]
AlphaFold Q8R2N0
Predicted Effect possibly damaging
Transcript: ENSMUST00000020049
AA Change: K9M

PolyPhen 2 Score 0.878 (Sensitivity: 0.82; Specificity: 0.94)
SMART Domains Protein: ENSMUSP00000020049
Gene: ENSMUSG00000019897
AA Change: K9M

DomainStartEndE-ValueType
Pfam:rRNA_processing 48 239 2.5e-12 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000046638
SMART Domains Protein: ENSMUSP00000038665
Gene: ENSMUSG00000036009

DomainStartEndE-ValueType
Pfam:Methyltransf_32 149 413 1.9e-30 PFAM
Predicted Effect noncoding transcript
Transcript: ENSMUST00000133538
Predicted Effect noncoding transcript
Transcript: ENSMUST00000155406
Predicted Effect probably benign
Transcript: ENSMUST00000176040
Predicted Effect noncoding transcript
Transcript: ENSMUST00000176830
Predicted Effect probably benign
Transcript: ENSMUST00000176924
Meta Mutation Damage Score 0.0967 question?
Coding Region Coverage
  • 1x: 99.6%
  • 3x: 98.5%
  • 10x: 94.1%
  • 20x: 79.0%
Validation Efficiency
Allele List at MGI
Other mutations in this stock
Total: 76 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Actrt3 A G 3: 30,653,847 (GRCm39) V51A probably damaging Het
Adgb C T 10: 10,307,025 (GRCm39) probably null Het
Als2 A G 1: 59,250,296 (GRCm39) S483P probably damaging Het
Ankrd10 C T 8: 11,665,682 (GRCm39) R306H probably damaging Het
Arhgef10 T C 8: 15,025,093 (GRCm39) probably null Het
Arhgef10 A G 8: 15,025,666 (GRCm39) I459V probably benign Het
Armc2 C T 10: 41,842,696 (GRCm39) probably null Het
Atp12a A G 14: 56,624,407 (GRCm39) R952G possibly damaging Het
Atp6v1g1 A G 4: 63,468,258 (GRCm39) Y87C probably benign Het
Cacna2d1 G A 5: 16,517,566 (GRCm39) C404Y probably damaging Het
Cd6 A G 19: 10,771,990 (GRCm39) I307T possibly damaging Het
Cimap1d G A 10: 79,481,487 (GRCm39) T14I probably benign Het
Clasrp C A 7: 19,319,165 (GRCm39) probably benign Het
Csmd2 T C 4: 128,451,511 (GRCm39) F113S unknown Het
Csmd3 C T 15: 47,721,320 (GRCm39) G1437D probably damaging Het
Cyp4a14 C A 4: 115,344,498 (GRCm39) G456W probably damaging Het
Cyp4a30b A G 4: 115,315,559 (GRCm39) H260R possibly damaging Het
Dcp1b C T 6: 119,191,735 (GRCm39) S217L probably benign Het
Dennd2b A T 7: 109,156,637 (GRCm39) Y38N probably benign Het
Dhx57 A T 17: 80,558,805 (GRCm39) D1051E probably benign Het
Dmp1 A G 5: 104,359,974 (GRCm39) S217G probably benign Het
Eef2 GCCC GCCCC 10: 81,014,601 (GRCm39) probably null Het
Eif4enif1 C T 11: 3,192,586 (GRCm39) P805S probably damaging Het
Eral1 A G 11: 77,967,104 (GRCm39) I164T possibly damaging Het
Esr1 G A 10: 4,947,890 (GRCm39) R481H probably damaging Het
Fan1 A G 7: 64,012,938 (GRCm39) I668T probably benign Het
Gbp11 C T 5: 105,478,866 (GRCm39) D191N probably benign Het
Gria2 G A 3: 80,609,799 (GRCm39) T670I probably damaging Het
Gria4 T A 9: 4,503,614 (GRCm39) N334I probably damaging Het
Grm5 T C 7: 87,251,930 (GRCm39) V60A possibly damaging Het
Hjurp GT GTT 1: 88,194,246 (GRCm39) probably null Het
Ift172 C T 5: 31,415,205 (GRCm39) V1335I probably benign Het
Ino80d C T 1: 63,100,198 (GRCm39) probably null Het
Kif1c A G 11: 70,614,907 (GRCm39) E567G probably damaging Het
Krt31 T G 11: 99,938,699 (GRCm39) N298T possibly damaging Het
Matr3 T A 18: 35,705,349 (GRCm39) S91R probably benign Het
Mdm1 A G 10: 117,986,847 (GRCm39) T267A probably benign Het
Mlxip A G 5: 123,590,730 (GRCm39) M878V probably benign Het
Mmp1b A T 9: 7,386,875 (GRCm39) silent Het
Mroh2a GCCC GC 1: 88,159,979 (GRCm39) probably null Het
Mtor T A 4: 148,624,487 (GRCm39) M2089K probably benign Het
Mylk2 A G 2: 152,761,268 (GRCm39) K457R probably damaging Het
Nomo1 C A 7: 45,696,361 (GRCm39) T293N probably damaging Het
Or10g1 T G 14: 52,648,318 (GRCm39) T4P probably benign Het
Or6c211 A T 10: 129,505,628 (GRCm39) C253* probably null Het
Or8k33 T C 2: 86,383,928 (GRCm39) D180G possibly damaging Het
Ostc T C 3: 130,497,157 (GRCm39) N80S probably damaging Het
Otud4 T A 8: 80,387,702 (GRCm39) N300K possibly damaging Het
Palmd T C 3: 116,717,400 (GRCm39) R366G possibly damaging Het
Pcdhb20 A T 18: 37,638,833 (GRCm39) Q453L possibly damaging Het
Pcdhga9 T A 18: 37,870,524 (GRCm39) Y118N possibly damaging Het
Pes1 C A 11: 3,926,834 (GRCm39) T372K probably benign Het
Plcl1 A T 1: 55,736,309 (GRCm39) D550V probably benign Het
Plekhg5 T A 4: 152,191,960 (GRCm39) C433S probably benign Het
Plin2 A G 4: 86,586,915 (GRCm39) M1T probably null Het
Ppp1r7 T A 1: 93,285,585 (GRCm39) probably null Het
Psmb8 T C 17: 34,419,144 (GRCm39) I146T probably damaging Het
Pzp A T 6: 128,462,519 (GRCm39) probably null Het
Rel T C 11: 23,711,129 (GRCm39) I13V probably benign Het
Reln C T 5: 22,254,789 (GRCm39) V527I possibly damaging Het
Retnla A G 16: 48,663,975 (GRCm39) R90G probably benign Het
Semp2l2b A T 10: 21,943,278 (GRCm39) I234N probably benign Het
Shoc1 A C 4: 59,093,850 (GRCm39) L226R probably damaging Het
Slc39a8 T A 3: 135,592,554 (GRCm39) probably null Het
Slc5a8 A G 10: 88,740,825 (GRCm39) I247V probably benign Het
Spcs2 T C 7: 99,488,968 (GRCm39) D240G probably damaging Het
Stx3 A T 19: 11,766,938 (GRCm39) V91D probably damaging Het
Tafa2 A T 10: 123,540,270 (GRCm39) H42L possibly damaging Het
Tbc1d8 A G 1: 39,444,398 (GRCm39) F187S probably damaging Het
Thbs1 C G 2: 117,949,859 (GRCm39) N611K probably damaging Het
Tipin A C 9: 64,211,609 (GRCm39) S232R probably benign Het
Tmem132b A G 5: 125,715,332 (GRCm39) D347G probably benign Het
Vmn2r68 A C 7: 84,882,834 (GRCm39) M306R probably benign Het
Vwa7 G A 17: 35,240,218 (GRCm39) M395I probably damaging Het
Ybx3 G A 6: 131,347,376 (GRCm39) A253V probably damaging Het
Zfp53 A T 17: 21,728,340 (GRCm39) E124D probably benign Het
Other mutations in Ccdc59
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00466:Ccdc59 APN 10 105,683,034 (GRCm39) missense probably benign 0.01
IGL00466:Ccdc59 APN 10 105,683,035 (GRCm39) missense probably benign 0.00
R2173:Ccdc59 UTSW 10 105,677,388 (GRCm39) missense possibly damaging 0.88
R2174:Ccdc59 UTSW 10 105,677,388 (GRCm39) missense possibly damaging 0.88
R2870:Ccdc59 UTSW 10 105,677,388 (GRCm39) missense possibly damaging 0.88
R2873:Ccdc59 UTSW 10 105,677,388 (GRCm39) missense possibly damaging 0.88
R2937:Ccdc59 UTSW 10 105,677,388 (GRCm39) missense possibly damaging 0.88
R2938:Ccdc59 UTSW 10 105,677,388 (GRCm39) missense possibly damaging 0.88
R4796:Ccdc59 UTSW 10 105,677,429 (GRCm39) missense probably benign 0.05
R5495:Ccdc59 UTSW 10 105,681,239 (GRCm39) missense probably damaging 1.00
R7938:Ccdc59 UTSW 10 105,677,455 (GRCm39) missense probably benign 0.03
R9022:Ccdc59 UTSW 10 105,683,007 (GRCm39) missense probably damaging 0.99
Predicted Primers PCR Primer
(F):5'- CTCAGCAAGCCCTGTAACTTGTC -3'
(R):5'- GTTAAATCACTGAAGCTGACCGC -3'

Sequencing Primer
(F):5'- GTTGGGCGATTGATTGCTTC -3'
(R):5'- CGTCCGGTTCTCAGTCAAAG -3'
Posted On 2014-12-04