Mutagenetix > Incidental Mutation

Incidental Mutation 'R2871:Rnf6'

253718

Institutional Source

Beutler Lab

Gene Symbol

Rnf6

Ensembl Gene

ENSMUSG00000029634

Gene Name

ring finger protein (C3H2C3 type) 6

Synonyms

5730419H05Rik, 1200013I08Rik

MMRRC Submission

040459-MU

Accession Numbers

Essential gene?

Probably essential (E-score: 0.808) question?

Stock #

R2871 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

146209192-146221555 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 146210405 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Tyrosine to Cysteine at position 601 (Y601C)

Ref Sequence

ENSEMBL: ENSMUSP00000128774 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000067837] [ENSMUST00000159074] [ENSMUST00000161331] [ENSMUST00000161574] [ENSMUST00000161859] [ENSMUST00000169407]

AlphaFold

Q9DBU5

Predicted Effect

probably benign
Transcript: ENSMUST00000067837
AA Change: Y601C

PolyPhen 2 Score 0.069 (Sensitivity: 0.94; Specificity: 0.84)

SMART Domains

Protein: ENSMUSP00000067559
Gene: ENSMUSG00000029634
AA Change: Y601C

Domain	Start	End	E-Value	Type
low complexity region	4	16	N/A	INTRINSIC
low complexity region	79	95	N/A	INTRINSIC
low complexity region	187	215	N/A	INTRINSIC
low complexity region	513	530	N/A	INTRINSIC
RING	614	654	6.68e-6	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000159074

SMART Domains

Protein: ENSMUSP00000123926
Gene: ENSMUSG00000029634

Domain	Start	End	E-Value	Type
low complexity region	15	27	N/A	INTRINSIC
low complexity region	90	106	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000161331

SMART Domains

Protein: ENSMUSP00000125611
Gene: ENSMUSG00000029634

Domain	Start	End	E-Value	Type
low complexity region	4	16	N/A	INTRINSIC
low complexity region	79	95	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000161574

SMART Domains

Protein: ENSMUSP00000123730
Gene: ENSMUSG00000029634

Domain	Start	End	E-Value	Type
low complexity region	15	27	N/A	INTRINSIC
low complexity region	90	106	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000161859
AA Change: Y601C

PolyPhen 2 Score 0.069 (Sensitivity: 0.94; Specificity: 0.84)

SMART Domains

Protein: ENSMUSP00000124293
Gene: ENSMUSG00000029634
AA Change: Y601C

Domain	Start	End	E-Value	Type
low complexity region	4	16	N/A	INTRINSIC
low complexity region	79	95	N/A	INTRINSIC
low complexity region	187	215	N/A	INTRINSIC
low complexity region	513	530	N/A	INTRINSIC
RING	614	654	6.68e-6	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000162219

SMART Domains

Protein: ENSMUSP00000123708
Gene: ENSMUSG00000029634

Domain	Start	End	E-Value	Type
low complexity region	49	65	N/A	INTRINSIC
low complexity region	157	185	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000169407
AA Change: Y601C

PolyPhen 2 Score 0.069 (Sensitivity: 0.94; Specificity: 0.84)

SMART Domains

Protein: ENSMUSP00000128774
Gene: ENSMUSG00000029634
AA Change: Y601C

Domain	Start	End	E-Value	Type
low complexity region	4	16	N/A	INTRINSIC
low complexity region	79	95	N/A	INTRINSIC
low complexity region	187	215	N/A	INTRINSIC
low complexity region	513	530	N/A	INTRINSIC
RING	614	654	6.68e-6	SMART

Meta Mutation Damage Score

0.3478

Coding Region Coverage

1x: 99.5%
3x: 98.2%
10x: 92.4%
20x: 72.0%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene contains a RING-H2 finger motif. Deletions and mutations in this gene were detected in esophageal squamous cell carcinoma (ESCC), suggesting that this protein may be a potential tumor suppressor. Studies of the mouse counterpart suggested a role of this protein in the transcription regulation that controls germinal differentiation. Multiple alternatively spliced transcript variants encoding the same protein are observed. [provided by RefSeq, Jul 2008]

Allele List at MGI

Other mutations in this stock

Total: 72 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca8b	A	G	11: 109,955,176	C811R	possibly damaging	Het
AI481877	A	C	4: 59,093,850	L226R	probably damaging	Het
Akap8l	G	A	17: 32,338,442	T65I	possibly damaging	Het
Arid4a	T	A	12: 71,022,260		probably null	Het
Armc2	C	T	10: 41,966,700		probably null	Het
Atp6v1g1	A	G	4: 63,550,021	Y87C	probably benign	Het
Cfap54	A	T	10: 92,921,419	F273I	possibly damaging	Het
Clasrp	C	A	7: 19,585,240		probably benign	Het
Csmd2	T	C	4: 128,557,718	F113S	unknown	Het
Cyp4a14	C	A	4: 115,487,301	G456W	probably damaging	Het
Cyp4a30b	A	G	4: 115,458,362	H260R	possibly damaging	Het
Ddrgk1	T	A	2: 130,664,644		probably benign	Het
Dhx57	A	T	17: 80,251,376	D1051E	probably benign	Het
Eef2	GCCC	GCCCC	10: 81,178,767		probably null	Het
Eif4enif1	C	T	11: 3,242,586	P805S	probably damaging	Het
Eml5	C	T	12: 98,865,401	D433N	probably damaging	Het
Fan1	A	G	7: 64,363,190	I668T	probably benign	Het
Frmpd4	A	T	X: 167,477,247	D1166E	probably benign	Het
Gm813	A	T	16: 58,613,979	I125K	probably benign	Het
Gria2	G	A	3: 80,702,492	T670I	probably damaging	Het
Grid2ip	C	A	5: 143,357,929	Q127K	probably benign	Het
Hdhd2	T	C	18: 76,955,006	F44L	probably damaging	Het
Hjurp	GT	GTT	1: 88,266,524		probably null	Het
Hmcn1	A	T	1: 150,738,716	V1313D	possibly damaging	Het
Ift172	C	T	5: 31,257,861	V1335I	probably benign	Het
Ighv2-2	G	A	12: 113,588,498	T40I	possibly damaging	Het
Kcnk10	T	A	12: 98,434,813	R520S	probably benign	Het
Kif1c	A	G	11: 70,724,081	E567G	probably damaging	Het
Klf8	A	T	X: 153,382,682	E82D	probably damaging	Het
Kpna7	T	C	5: 144,993,935	T367A	probably benign	Het
Lpo	A	G	11: 87,816,524	I221T	possibly damaging	Het
Lrrn3	T	C	12: 41,452,723	I532V	probably benign	Het
Matr3	T	A	18: 35,572,296	S91R	probably benign	Het
Mki67	G	A	7: 135,708,149	P191L	probably benign	Het
Mlxip	A	G	5: 123,452,667	M878V	probably benign	Het
Mpp7	G	A	18: 7,461,678	P65L	possibly damaging	Het
Mroh2a	C	A	1: 88,255,565	L1292I	probably damaging	Het
Msh2	C	A	17: 87,685,584	Q314K	possibly damaging	Het
Mtor	T	A	4: 148,540,030	M2089K	probably benign	Het
Myo9b	G	A	8: 71,334,337	R721Q	probably benign	Het
Nlrp4b	C	T	7: 10,710,243	Q40*	probably null	Het
Nomo1	C	A	7: 46,046,937	T293N	probably damaging	Het
Notum	A	G	11: 120,660,196	V48A	probably benign	Het
Npas3	C	T	12: 54,068,013	R542*	probably null	Het
Olfr1101	A	T	2: 86,988,848	C109*	probably null	Het
Olfr419	T	C	1: 174,250,526	S134G	probably benign	Het
Olfr45	A	G	7: 140,691,285	I127V	possibly damaging	Het
Olfr71	C	A	4: 43,706,458	V37L	probably benign	Het
Ostc	T	C	3: 130,703,508	N80S	probably damaging	Het
Palmd	T	C	3: 116,923,751	R366G	possibly damaging	Het
Parp1	A	G	1: 180,573,665	D45G	probably damaging	Het
Pcdhga9	T	A	18: 37,737,471	Y118N	possibly damaging	Het
Pes1	C	A	11: 3,976,834	T372K	probably benign	Het
Pkp4	C	A	2: 59,308,156	T250K	probably benign	Het
Plekhg5	T	A	4: 152,107,503	C433S	probably benign	Het
Plin2	A	G	4: 86,668,678	M1T	probably null	Het
Prdx4	A	G	X: 155,340,464	V15A	probably benign	Het
Psmb8	T	C	17: 34,200,170	I146T	probably damaging	Het
Psmd13	A	T	7: 140,887,055	T116S	probably damaging	Het
Rel	T	C	11: 23,761,129	I13V	probably benign	Het
Reln	C	T	5: 22,049,791	V527I	possibly damaging	Het
Rps6kc1	T	C	1: 190,899,569	I48M	probably damaging	Het
Sfi1	CCTCTC	CCTCTCTC	11: 3,177,419		probably benign	Het
Slc39a8	T	A	3: 135,886,793		probably null	Het
Sppl2c	C	T	11: 104,187,315	P314S	probably benign	Het
St5	A	T	7: 109,557,430	Y38N	probably benign	Het
Tnni3k	C	T	3: 154,938,750		probably null	Het
Ugt1a1	AT	A	1: 88,212,371		probably null	Het
Vmn2r68	A	C	7: 85,233,626	M306R	probably benign	Het
Vmn2r70	T	A	7: 85,559,019	Y750F	probably damaging	Het
Vwa7	G	A	17: 35,021,242	M395I	probably damaging	Het
Zfp53	A	T	17: 21,508,078	E124D	probably benign	Het

Other mutations in Rnf6

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00706:Rnf6	APN	5	146211905	missense	possibly damaging	0.86
IGL01432:Rnf6	APN	5	146216121	missense	possibly damaging	0.61
IGL01722:Rnf6	APN	5	146210226	missense	probably benign
IGL01866:Rnf6	APN	5	146210907	missense	probably damaging	0.99
R0141:Rnf6	UTSW	5	146211835	missense	possibly damaging	0.95
R0551:Rnf6	UTSW	5	146211395	missense	possibly damaging	0.65
R0619:Rnf6	UTSW	5	146210721	missense	possibly damaging	0.58
R0685:Rnf6	UTSW	5	146211658	missense	probably damaging	0.99
R1363:Rnf6	UTSW	5	146211559	missense	probably benign
R1387:Rnf6	UTSW	5	146211245	missense	probably benign	0.00
R1671:Rnf6	UTSW	5	146211188	nonsense	probably null
R2047:Rnf6	UTSW	5	146211864	missense	probably damaging	0.99
R2074:Rnf6	UTSW	5	146210906	missense	probably damaging	0.98
R2107:Rnf6	UTSW	5	146211281	missense	probably damaging	0.99
R2871:Rnf6	UTSW	5	146210405	missense	probably benign	0.07
R2873:Rnf6	UTSW	5	146210405	missense	probably benign	0.07
R2874:Rnf6	UTSW	5	146210405	missense	probably benign	0.07
R4361:Rnf6	UTSW	5	146211279	missense	probably damaging	1.00
R5421:Rnf6	UTSW	5	146210529	missense	probably benign	0.06
R5437:Rnf6	UTSW	5	146210280	missense	probably damaging	1.00
R5614:Rnf6	UTSW	5	146218100	splice site	probably null
R5848:Rnf6	UTSW	5	146211149	missense	probably benign	0.25
R7515:Rnf6	UTSW	5	146211792	missense	probably damaging	1.00
R7589:Rnf6	UTSW	5	146211429	missense	possibly damaging	0.92
R7767:Rnf6	UTSW	5	146211176	missense	probably damaging	0.98
R7767:Rnf6	UTSW	5	146211177	nonsense	probably null
R8155:Rnf6	UTSW	5	146211005	missense	probably damaging	0.96
R8205:Rnf6	UTSW	5	146210904	missense	probably damaging	0.98
R8302:Rnf6	UTSW	5	146211524	missense	probably benign
R8433:Rnf6	UTSW	5	146211278	missense	probably damaging	0.96
R9561:Rnf6	UTSW	5	146211126	missense	probably benign	0.00
R9732:Rnf6	UTSW	5	146216121	missense	probably benign	0.01

Predicted Primers

PCR Primer
(F):5'- GGCTCCGAATTCTAAGACAGG -3'
(R):5'- TGAAATGCTAGCTGTGAGGG -3'

Sequencing Primer
(F):5'- GAATTCTAAGACAGGCCGCCG -3'
(R):5'- TAGCTGTGAGGGAGCCC -3'

Posted On

2014-12-04