Mutagenetix > Incidental Mutation

Incidental Mutation 'R2518:Bivm'

254014

Institutional Source

Beutler Lab

Gene Symbol

Bivm

Ensembl Gene

ENSMUSG00000041684

Gene Name

basic, immunoglobulin-like variable motif containing

Synonyms

MMRRC Submission

040422-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.091) question?

Stock #

R2518 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

44158117-44183930 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 44168775 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Valine to Alanine at position 279 (V279A)

Ref Sequence

ENSEMBL: ENSMUSP00000110357 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000035991] [ENSMUST00000114709] [ENSMUST00000129068] [ENSMUST00000155917]

AlphaFold

Q8CBX9

Predicted Effect

probably damaging
Transcript: ENSMUST00000035991
AA Change: V279A

PolyPhen 2 Score 0.962 (Sensitivity: 0.78; Specificity: 0.95)

SMART Domains

Protein: ENSMUSP00000041964
Gene: ENSMUSG00000041684
AA Change: V279A

Domain	Start	End	E-Value	Type
low complexity region	117	129	N/A	INTRINSIC
low complexity region	162	174	N/A	INTRINSIC
Blast:XPGN	456	501	3e-11	BLAST

Predicted Effect

probably damaging
Transcript: ENSMUST00000114709
AA Change: V279A

PolyPhen 2 Score 0.962 (Sensitivity: 0.78; Specificity: 0.95)

SMART Domains

Protein: ENSMUSP00000110357
Gene: ENSMUSG00000041684
AA Change: V279A

Domain	Start	End	E-Value	Type
low complexity region	117	129	N/A	INTRINSIC
low complexity region	162	174	N/A	INTRINSIC
Blast:XPGN	456	501	3e-11	BLAST

Predicted Effect

probably benign
Transcript: ENSMUST00000129068

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000138521

Predicted Effect

probably benign
Transcript: ENSMUST00000155917

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000186280

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.2%
20x: 94.7%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 63 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adam18	A	G	8: 25,127,157 (GRCm39)	C480R	probably damaging	Het
Aftph	G	T	11: 20,675,797 (GRCm39)	T604K	probably damaging	Het
C2cd2	G	A	16: 97,723,286 (GRCm39)	T77I	probably benign	Het
Ccdc146	T	C	5: 21,510,526 (GRCm39)	H527R	probably benign	Het
Cd226	A	G	18: 89,225,451 (GRCm39)	N116S	probably benign	Het
Cit	A	G	5: 116,125,105 (GRCm39)	K1612E	probably damaging	Het
Cmtr1	T	A	17: 29,900,954 (GRCm39)	Y663*	probably null	Het
Col3a1	T	A	1: 45,376,672 (GRCm39)		probably benign	Het
Copa	A	G	1: 171,947,468 (GRCm39)	N1095D	probably benign	Het
Cpne1	G	T	2: 155,915,891 (GRCm39)	A433E	probably damaging	Het
Cyfip1	C	T	7: 55,578,032 (GRCm39)	L1181F	probably damaging	Het
Dnajc6	T	A	4: 101,470,127 (GRCm39)	I220N	probably damaging	Het
Duxbl1	G	C	14: 25,988,172 (GRCm39)		probably benign	Het
Fam135b	C	T	15: 71,335,760 (GRCm39)	R478H	probably benign	Het
Fam91a1	T	A	15: 58,322,449 (GRCm39)	S734T	possibly damaging	Het
Fut10	T	G	8: 31,726,495 (GRCm39)	S417A	probably benign	Het
Gm9945	C	T	11: 53,371,163 (GRCm39)		probably benign	Het
Golga4	A	G	9: 118,385,680 (GRCm39)	E934G	probably damaging	Het
Gpat2	G	A	2: 127,270,211 (GRCm39)	V75M	probably damaging	Het
Hdac5	A	G	11: 102,087,962 (GRCm39)	V949A	probably damaging	Het
Hdgfl1	G	T	13: 26,953,732 (GRCm39)	L114I	probably benign	Het
Ifi27l2b	T	A	12: 103,422,083 (GRCm39)	M94L	unknown	Het
Irs2	C	A	8: 11,055,352 (GRCm39)	A1027S	probably benign	Het
Itga2	A	T	13: 115,017,578 (GRCm39)	C111S	probably damaging	Het
Khdrbs1	T	C	4: 129,614,540 (GRCm39)	T338A	probably benign	Het
Klk1	T	C	7: 43,870,161 (GRCm39)		probably null	Het
Kmt2b	T	C	7: 30,275,493 (GRCm39)	N1822S	probably benign	Het
Lrig3	T	C	10: 125,830,310 (GRCm39)	I136T	probably benign	Het
Lyar	T	A	5: 38,385,276 (GRCm39)	D105E	probably benign	Het
Mat1a	T	A	14: 40,844,469 (GRCm39)	D366E	probably benign	Het
Mrc2	G	A	11: 105,239,257 (GRCm39)		probably null	Het
Naip1	A	T	13: 100,559,727 (GRCm39)	D1092E	probably benign	Het
Neb	T	A	2: 52,139,523 (GRCm39)	K95*	probably null	Het
Nectin4	A	G	1: 171,207,776 (GRCm39)	D56G	probably benign	Het
Nup58	A	T	14: 60,470,109 (GRCm39)	F334Y	probably damaging	Het
Or14a256	A	T	7: 86,265,395 (GRCm39)	F153I	probably benign	Het
Or9i1	A	G	19: 13,839,673 (GRCm39)	N172S	probably damaging	Het
Pde8a	C	A	7: 80,967,170 (GRCm39)	T437K	probably benign	Het
Ppp1r3a	A	T	6: 14,719,377 (GRCm39)	N512K	possibly damaging	Het
Pramel12	A	G	4: 143,144,473 (GRCm39)	Q273R	possibly damaging	Het
Rad51ap2	A	G	12: 11,507,068 (GRCm39)	D330G	probably damaging	Het
Ren1	G	A	1: 133,287,862 (GRCm39)	A399T	probably damaging	Het
Rnft2	G	T	5: 118,332,670 (GRCm39)		probably benign	Het
Septin14	A	T	5: 129,776,099 (GRCm39)	S27T	probably benign	Het
Shld1	T	A	2: 132,592,447 (GRCm39)	S165T	probably damaging	Het
Shox2	T	C	3: 66,885,692 (GRCm39)	K128E	possibly damaging	Het
Skint1	T	C	4: 111,882,678 (GRCm39)	W241R	probably benign	Het
Slc24a4	T	A	12: 102,188,310 (GRCm39)	H134Q	probably benign	Het
Slc25a36	A	T	9: 96,961,124 (GRCm39)	L165Q	possibly damaging	Het
Slc35f1	A	G	10: 52,949,630 (GRCm39)	I240V	probably benign	Het
Slc66a1	A	G	4: 139,029,810 (GRCm39)	F74L	probably damaging	Het
Tab2	G	A	10: 7,783,245 (GRCm39)	P679L	probably damaging	Het
Tarbp2	A	G	15: 102,426,992 (GRCm39)	E3G	possibly damaging	Het
Tas2r130	A	T	6: 131,607,036 (GRCm39)	I253K	probably damaging	Het
Timm44	A	C	8: 4,316,588 (GRCm39)	C319G	probably null	Het
Tjap1	A	T	17: 46,571,021 (GRCm39)	N165K	probably damaging	Het
Tmem63b	A	G	17: 45,977,080 (GRCm39)	I429T	probably benign	Het
Trabd2b	A	T	4: 114,457,100 (GRCm39)	D339V	probably damaging	Het
Tst	T	C	15: 78,290,033 (GRCm39)	M1V	probably null	Het
Ube4a	A	T	9: 44,859,435 (GRCm39)	N335K	probably benign	Het
Vps54	C	T	11: 21,256,394 (GRCm39)	T633M	probably benign	Het
Zfhx4	C	T	3: 5,468,418 (GRCm39)	P2859S	probably benign	Het
Zfp953	A	G	13: 67,496,003 (GRCm39)	Y13H	probably damaging	Het

Other mutations in Bivm

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01090:Bivm	APN	1	44,168,451 (GRCm39)	missense	probably damaging	1.00
IGL01384:Bivm	APN	1	44,165,907 (GRCm39)	missense	possibly damaging	0.86
IGL01552:Bivm	APN	1	44,165,933 (GRCm39)	missense	probably benign	0.40
IGL01736:Bivm	APN	1	44,180,973 (GRCm39)	missense	probably damaging	1.00
IGL02332:Bivm	APN	1	44,167,880 (GRCm39)	unclassified	probably benign
IGL02704:Bivm	APN	1	44,165,606 (GRCm39)	missense	probably benign
IGL02859:Bivm	APN	1	44,176,159 (GRCm39)	nonsense	probably null
IGL02939:Bivm	APN	1	44,182,120 (GRCm39)	missense	probably benign	0.03
IGL03265:Bivm	APN	1	44,181,005 (GRCm39)	missense	probably damaging	1.00
R0456:Bivm	UTSW	1	44,165,969 (GRCm39)	missense	probably damaging	1.00
R1172:Bivm	UTSW	1	44,165,942 (GRCm39)	missense	probably benign	0.04
R1173:Bivm	UTSW	1	44,165,942 (GRCm39)	missense	probably benign	0.04
R1174:Bivm	UTSW	1	44,165,942 (GRCm39)	missense	probably benign	0.04
R1177:Bivm	UTSW	1	44,182,123 (GRCm39)	missense	probably benign	0.28
R1350:Bivm	UTSW	1	44,165,863 (GRCm39)	missense	possibly damaging	0.88
R1611:Bivm	UTSW	1	44,165,907 (GRCm39)	missense	possibly damaging	0.92
R3735:Bivm	UTSW	1	44,165,594 (GRCm39)	missense	probably benign	0.07
R4290:Bivm	UTSW	1	44,177,793 (GRCm39)	missense	probably damaging	1.00
R4292:Bivm	UTSW	1	44,177,793 (GRCm39)	missense	probably damaging	1.00
R4293:Bivm	UTSW	1	44,177,793 (GRCm39)	missense	probably damaging	1.00
R4294:Bivm	UTSW	1	44,177,793 (GRCm39)	missense	probably damaging	1.00
R4849:Bivm	UTSW	1	44,182,033 (GRCm39)	missense	possibly damaging	0.70
R5204:Bivm	UTSW	1	44,177,738 (GRCm39)	missense	probably damaging	0.96
R5912:Bivm	UTSW	1	44,165,573 (GRCm39)	nonsense	probably null
R6045:Bivm	UTSW	1	44,158,233 (GRCm39)	start gained	probably benign
R6216:Bivm	UTSW	1	44,166,028 (GRCm39)	critical splice donor site	probably null
R6836:Bivm	UTSW	1	44,182,296 (GRCm39)	missense	possibly damaging	0.88
R7120:Bivm	UTSW	1	44,165,606 (GRCm39)	missense	probably benign
R7817:Bivm	UTSW	1	44,165,561 (GRCm39)	missense	probably benign	0.01
R8893:Bivm	UTSW	1	44,158,439 (GRCm39)	intron	probably benign
R9110:Bivm	UTSW	1	44,168,526 (GRCm39)	critical splice donor site	probably null
R9128:Bivm	UTSW	1	44,167,949 (GRCm39)	missense	probably null	1.00
R9511:Bivm	UTSW	1	44,182,250 (GRCm39)	missense	possibly damaging	0.88

Predicted Primers

PCR Primer
(F):5'- ACGCCTTCCTTTAATTCTGTGAAG -3'
(R):5'- AACGTGGCCAATTTCTGCG -3'

Sequencing Primer
(F):5'- TTGGGGACGGTACAAGATAGACTTTG -3'
(R):5'- CGATGTACTCAACCTGAAAGTTTGGG -3'

Posted On

2014-12-04