Mutagenetix > Incidental Mutation

Incidental Mutation 'R2937:Gimap8'

255060

Institutional Source

Beutler Lab

Gene Symbol

Gimap8

Ensembl Gene

ENSMUSG00000064262

Gene Name

GTPase, IMAP family member 8

Synonyms

LOC243374, IAN9

MMRRC Submission

040514-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R2937 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

48624168-48637809 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 48635730 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Arginine to Serine at position 498 (R498S)

Ref Sequence

ENSEMBL: ENSMUSP00000145255 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000078223] [ENSMUST00000203083] [ENSMUST00000203509]

AlphaFold

Q75N62

Predicted Effect

unknown
Transcript: ENSMUST00000078223
AA Change: I336F

SMART Domains

Protein: ENSMUSP00000077350
Gene: ENSMUSG00000064262
AA Change: I336F

Domain	Start	End	E-Value	Type
low complexity region	2	15	N/A	INTRINSIC
Pfam:AIG1	49	251	1.5e-55	PFAM
Pfam:MMR_HSR1	50	173	4.7e-7	PFAM
Pfam:AIG1	285	473	7.7e-51	PFAM
Pfam:AIG1	476	682	4.2e-67	PFAM
Pfam:MMR_HSR1	477	603	3e-7	PFAM

Predicted Effect

possibly damaging
Transcript: ENSMUST00000203083
AA Change: R498S

PolyPhen 2 Score 0.546 (Sensitivity: 0.88; Specificity: 0.91)

SMART Domains

Protein: ENSMUSP00000145286
Gene: ENSMUSG00000064262
AA Change: R498S

Domain	Start	End	E-Value	Type
low complexity region	2	15	N/A	INTRINSIC
Pfam:AIG1	49	251	1.5e-55	PFAM
Pfam:MMR_HSR1	50	173	4.7e-7	PFAM
Pfam:AIG1	285	473	7.7e-51	PFAM
Pfam:AIG1	476	682	4.2e-67	PFAM
Pfam:MMR_HSR1	477	603	3e-7	PFAM

Predicted Effect

possibly damaging
Transcript: ENSMUST00000203509
AA Change: R498S

PolyPhen 2 Score 0.546 (Sensitivity: 0.88; Specificity: 0.91)

SMART Domains

Protein: ENSMUSP00000145255
Gene: ENSMUSG00000064262
AA Change: R498S

Domain	Start	End	E-Value	Type
low complexity region	2	15	N/A	INTRINSIC
Pfam:AIG1	49	251	1.5e-55	PFAM
Pfam:MMR_HSR1	50	173	4.7e-7	PFAM
Pfam:AIG1	285	473	7.7e-51	PFAM
Pfam:AIG1	476	682	4.2e-67	PFAM
Pfam:MMR_HSR1	477	603	3e-7	PFAM

Meta Mutation Damage Score

0.1795

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.4%
20x: 95.6%

Validation Efficiency

100% (73/73)

MGI Phenotype

FUNCTION: This gene encodes a protein belonging to the GTP-binding superfamily and to the immuno-associated nucleotide (IAN) subfamily of nucleotide-binding proteins. The encoded protein is larger than the other gene family members and includes three AIG1 domains (corresponding to the AIG1 protein from Arabidopsis thaliana) whereas other family members have one AIG1 domain. In humans, the IAN subfamily genes are located in a cluster at 7q36.1. [provided by RefSeq, Jul 2008]

Allele List at MGI

Other mutations in this stock

Total: 73 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Acsm1	A	G	7: 119,258,350 (GRCm39)	E481G	probably damaging	Het
Anks1b	C	T	10: 89,912,928 (GRCm39)	T351M	probably damaging	Het
Arhgap45	T	A	10: 79,864,836 (GRCm39)	M933K	probably damaging	Het
Asph	A	C	4: 9,542,314 (GRCm39)		probably benign	Het
Bace2	T	C	16: 97,213,388 (GRCm39)		probably null	Het
Cacna1b	A	G	2: 24,496,540 (GRCm39)	V125A	probably benign	Het
Cbarp	T	C	10: 79,967,603 (GRCm39)	D539G	probably damaging	Het
Ccdc59	A	T	10: 105,677,388 (GRCm39)	K9M	possibly damaging	Het
Cdh15	G	A	8: 123,588,763 (GRCm39)	R279Q	probably damaging	Het
Cdr1	T	G	X: 60,228,968 (GRCm39)	D66A	unknown	Het
Cela3b	A	G	4: 137,150,574 (GRCm39)	I208T	probably benign	Het
Cfap91	A	T	16: 38,131,400 (GRCm39)	I471N	possibly damaging	Het
Clca3a2	T	A	3: 144,519,679 (GRCm39)	T232S	probably benign	Het
Col1a2	G	A	6: 4,519,882 (GRCm39)		probably benign	Het
Col1a2	A	T	6: 4,520,788 (GRCm39)	Q375L	possibly damaging	Het
Cpd	T	C	11: 76,702,685 (GRCm39)	N561S	probably damaging	Het
Csn1s1	A	T	5: 87,824,995 (GRCm39)	Q221L	possibly damaging	Het
Depdc5	G	A	5: 33,058,965 (GRCm39)		probably null	Het
Dnah10	T	C	5: 124,896,476 (GRCm39)		probably null	Het
Dsg2	T	C	18: 20,712,185 (GRCm39)	F107S	probably damaging	Het
Dthd1	A	G	5: 63,000,300 (GRCm39)	I541V	probably benign	Het
Eml6	G	A	11: 29,783,049 (GRCm39)		probably benign	Het
Fermt2	A	C	14: 45,741,948 (GRCm39)		probably null	Het
Glis1	A	G	4: 107,489,488 (GRCm39)	N692D	possibly damaging	Het
Grtp1	G	A	8: 13,239,755 (GRCm39)		probably benign	Het
Hecw1	G	T	13: 14,420,421 (GRCm39)	Q1001K	possibly damaging	Het
Hydin	T	C	8: 111,130,927 (GRCm39)	V606A	possibly damaging	Het
Krt33b	T	A	11: 99,914,835 (GRCm39)	N388I	probably benign	Het
Lipf	T	C	19: 33,950,438 (GRCm39)	Y277H	probably damaging	Het
Lmod1	A	G	1: 135,291,654 (GRCm39)	K170E	probably benign	Het
Lrrtm1	A	T	6: 77,220,635 (GRCm39)	M31L	probably benign	Het
Man1c1	A	G	4: 134,430,263 (GRCm39)	I173T	possibly damaging	Het
Med17	T	C	9: 15,187,187 (GRCm39)	K196E	probably damaging	Het
Mmp25	T	A	17: 23,863,765 (GRCm39)	I22F	probably benign	Het
Nrg3	T	A	14: 38,092,965 (GRCm39)	N540I	possibly damaging	Het
Nsun5	C	T	5: 135,404,317 (GRCm39)	Q375*	probably null	Het
Or52ad1	T	C	7: 102,995,272 (GRCm39)	M288V	probably benign	Het
Or52r1c	T	A	7: 102,735,548 (GRCm39)	H269Q	probably benign	Het
Pcdh1	G	T	18: 38,322,815 (GRCm39)	A1006E	probably benign	Het
Pdss1	T	A	2: 22,796,799 (GRCm39)		probably null	Het
Plaa	G	A	4: 94,457,696 (GRCm39)	A758V	probably damaging	Het
Prl6a1	T	A	13: 27,499,303 (GRCm39)	W24R	probably damaging	Het
Ptk7	T	C	17: 46,883,476 (GRCm39)	H863R	probably damaging	Het
Rbm10	T	C	X: 20,513,934 (GRCm39)	L429P	possibly damaging	Het
Rhou	T	C	8: 124,387,880 (GRCm39)	I204T	possibly damaging	Het
Serpind1	G	T	16: 17,154,972 (GRCm39)	M266I	probably benign	Het
Sgcg	A	T	14: 61,467,074 (GRCm39)	F175L	probably damaging	Het
Slc2a2	T	G	3: 28,772,920 (GRCm39)	C238G	probably damaging	Het
Slc39a8	A	G	3: 135,592,584 (GRCm39)	M420V	probably benign	Het
Slc7a9	C	A	7: 35,163,167 (GRCm39)	Y457*	probably null	Het
Smpd3	C	T	8: 106,991,452 (GRCm39)	R367H	probably damaging	Het
Sntb2	T	C	8: 107,662,729 (GRCm39)	V99A	probably benign	Het
Specc1l	T	G	10: 75,094,965 (GRCm39)	I796R	probably damaging	Het
Stfa2l1	G	T	16: 35,980,316 (GRCm39)	V29F	probably damaging	Het
Synrg	T	C	11: 83,885,180 (GRCm39)	F455S	probably damaging	Het
Tap2	T	C	17: 34,431,328 (GRCm39)	V422A	possibly damaging	Het
Tcf7	A	T	11: 52,173,610 (GRCm39)		probably null	Het
Tcp10a	A	G	17: 7,597,173 (GRCm39)	Y110C	probably damaging	Het
Thoc1	T	A	18: 9,959,255 (GRCm39)	S43R	probably damaging	Het
Tlr1	A	G	5: 65,083,251 (GRCm39)	V442A	probably damaging	Het
Tmub1	A	G	5: 24,650,922 (GRCm39)	*261Q	probably null	Het
Trpc3	G	A	3: 36,688,532 (GRCm39)	R836*	probably null	Het
Tsbp1	A	T	17: 34,640,836 (GRCm39)	H57L	possibly damaging	Het
Ube2u	T	C	4: 100,381,495 (GRCm39)	S185P	possibly damaging	Het
Vamp5	A	G	6: 72,346,323 (GRCm39)	V91A	probably benign	Het
Vcp	A	G	4: 42,980,846 (GRCm39)	Y755H	probably damaging	Het
Vmn1r35	A	T	6: 66,655,950 (GRCm39)	M73K	possibly damaging	Het
Vmn2r12	C	T	5: 109,239,397 (GRCm39)	E389K	probably damaging	Het
Wdfy3	A	T	5: 102,091,988 (GRCm39)	F450L	probably benign	Het
Xpo4	G	T	14: 57,841,897 (GRCm39)	Q473K	probably benign	Het
Xpo7	A	G	14: 70,909,130 (GRCm39)	I797T	probably damaging	Het
Xylt1	C	A	7: 117,234,011 (GRCm39)	Q513K	probably benign	Het
Zfp229	T	C	17: 21,964,484 (GRCm39)	F238S	probably damaging	Het

Other mutations in Gimap8

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01341:Gimap8	APN	6	48,635,701 (GRCm39)	missense	probably damaging	1.00
IGL02830:Gimap8	APN	6	48,633,239 (GRCm39)	missense	probably benign	0.01
Kangchenjunga	UTSW	6	48,636,097 (GRCm39)	missense	probably damaging	1.00
lhotse	UTSW	6	48,635,888 (GRCm39)	missense	possibly damaging	0.74
Makalu	UTSW	6	48,633,122 (GRCm39)	missense	probably damaging	1.00
R1224:Gimap8	UTSW	6	48,627,629 (GRCm39)	missense	probably benign	0.04
R1386:Gimap8	UTSW	6	48,633,587 (GRCm39)	missense	probably benign	0.04
R1503:Gimap8	UTSW	6	48,624,463 (GRCm39)	critical splice donor site	probably null
R1560:Gimap8	UTSW	6	48,633,068 (GRCm39)	missense	probably damaging	1.00
R1681:Gimap8	UTSW	6	48,633,345 (GRCm39)	missense	probably benign	0.01
R2012:Gimap8	UTSW	6	48,633,287 (GRCm39)	missense	probably damaging	0.98
R2094:Gimap8	UTSW	6	48,627,502 (GRCm39)	missense	probably benign	0.00
R2938:Gimap8	UTSW	6	48,635,730 (GRCm39)	missense	possibly damaging	0.55
R3147:Gimap8	UTSW	6	48,627,440 (GRCm39)	missense	probably damaging	1.00
R4276:Gimap8	UTSW	6	48,636,017 (GRCm39)	missense	probably benign	0.35
R4281:Gimap8	UTSW	6	48,635,754 (GRCm39)	missense	probably benign	0.37
R4294:Gimap8	UTSW	6	48,635,891 (GRCm39)	missense	probably benign	0.00
R4713:Gimap8	UTSW	6	48,635,920 (GRCm39)	missense	probably benign	0.23
R4750:Gimap8	UTSW	6	48,627,361 (GRCm39)	missense	probably benign	0.01
R4896:Gimap8	UTSW	6	48,636,281 (GRCm39)	missense	possibly damaging	0.85
R4936:Gimap8	UTSW	6	48,633,068 (GRCm39)	missense	probably damaging	1.00
R5041:Gimap8	UTSW	6	48,636,097 (GRCm39)	missense	probably damaging	1.00
R5091:Gimap8	UTSW	6	48,633,581 (GRCm39)	missense	possibly damaging	0.91
R5215:Gimap8	UTSW	6	48,628,017 (GRCm39)	missense	possibly damaging	0.88
R5360:Gimap8	UTSW	6	48,633,236 (GRCm39)	missense	probably damaging	1.00
R6119:Gimap8	UTSW	6	48,635,888 (GRCm39)	missense	possibly damaging	0.74
R6221:Gimap8	UTSW	6	48,635,876 (GRCm39)	missense	probably damaging	1.00
R6450:Gimap8	UTSW	6	48,633,385 (GRCm39)	missense	probably benign	0.03
R7137:Gimap8	UTSW	6	48,627,187 (GRCm39)	missense	probably damaging	0.99
R7154:Gimap8	UTSW	6	48,633,122 (GRCm39)	missense	probably damaging	1.00
R7666:Gimap8	UTSW	6	48,636,089 (GRCm39)	missense	probably damaging	1.00
R7686:Gimap8	UTSW	6	48,633,006 (GRCm39)	missense	probably damaging	0.99
R7912:Gimap8	UTSW	6	48,627,999 (GRCm39)	missense	probably benign	0.09
R8467:Gimap8	UTSW	6	48,627,269 (GRCm39)	missense	probably benign	0.02
R8773:Gimap8	UTSW	6	48,633,545 (GRCm39)	missense	probably benign	0.01
R9202:Gimap8	UTSW	6	48,633,403 (GRCm39)	missense	probably benign	0.00
R9773:Gimap8	UTSW	6	48,633,568 (GRCm39)	missense	unknown

Predicted Primers

PCR Primer
(F):5'- CTAGACCACATGAGCTGGGAAG -3'
(R):5'- TCAAACAGTGATGGATCTCCTCC -3'

Sequencing Primer
(F):5'- ACAGACCTGCTCAGTGATGTCTG -3'
(R):5'- TCCTTTAACCTGGAGGGATCC -3'

Posted On

2014-12-29