Mutagenetix > Incidental Mutation

Incidental Mutation 'R2937:Or52r1c'

255067

Institutional Source

Beutler Lab

Gene Symbol

Or52r1c

Ensembl Gene

ENSMUSG00000073959

Gene Name

olfactory receptor family 52 subfamily R member 1C

Synonyms

MOR30-2, Olfr584, GA_x6K02T2PBJ9-5796876-5797820

MMRRC Submission

040514-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.065) question?

Stock #

R2937 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

102734727-102735686 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 102735548 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Histidine to Glutamine at position 269 (H269Q)

Ref Sequence

ENSEMBL: ENSMUSP00000151043 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000098210] [ENSMUST00000211036] [ENSMUST00000214215]

AlphaFold

Q8VGW0

Predicted Effect

probably benign
Transcript: ENSMUST00000098210
AA Change: H274Q

PolyPhen 2 Score 0.006 (Sensitivity: 0.97; Specificity: 0.75)

SMART Domains

Protein: ENSMUSP00000095811
Gene: ENSMUSG00000073959
AA Change: H274Q

Domain	Start	End	E-Value	Type
Pfam:7tm_4	38	317	1.4e-110	PFAM
Pfam:7TM_GPCR_Srsx	42	234	2.1e-9	PFAM
Pfam:7tm_1	48	299	4.6e-19	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000211036
AA Change: H269Q

Predicted Effect

probably benign
Transcript: ENSMUST00000214215
AA Change: H269Q

PolyPhen 2 Score 0.006 (Sensitivity: 0.97; Specificity: 0.75)

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.4%
20x: 95.6%

Validation Efficiency

100% (73/73)

MGI Phenotype

FUNCTION: Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]

Allele List at MGI

Other mutations in this stock

Total: 73 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Acsm1	A	G	7: 119,258,350 (GRCm39)	E481G	probably damaging	Het
Anks1b	C	T	10: 89,912,928 (GRCm39)	T351M	probably damaging	Het
Arhgap45	T	A	10: 79,864,836 (GRCm39)	M933K	probably damaging	Het
Asph	A	C	4: 9,542,314 (GRCm39)		probably benign	Het
Bace2	T	C	16: 97,213,388 (GRCm39)		probably null	Het
Cacna1b	A	G	2: 24,496,540 (GRCm39)	V125A	probably benign	Het
Cbarp	T	C	10: 79,967,603 (GRCm39)	D539G	probably damaging	Het
Ccdc59	A	T	10: 105,677,388 (GRCm39)	K9M	possibly damaging	Het
Cdh15	G	A	8: 123,588,763 (GRCm39)	R279Q	probably damaging	Het
Cdr1	T	G	X: 60,228,968 (GRCm39)	D66A	unknown	Het
Cela3b	A	G	4: 137,150,574 (GRCm39)	I208T	probably benign	Het
Cfap91	A	T	16: 38,131,400 (GRCm39)	I471N	possibly damaging	Het
Clca3a2	T	A	3: 144,519,679 (GRCm39)	T232S	probably benign	Het
Col1a2	G	A	6: 4,519,882 (GRCm39)		probably benign	Het
Col1a2	A	T	6: 4,520,788 (GRCm39)	Q375L	possibly damaging	Het
Cpd	T	C	11: 76,702,685 (GRCm39)	N561S	probably damaging	Het
Csn1s1	A	T	5: 87,824,995 (GRCm39)	Q221L	possibly damaging	Het
Depdc5	G	A	5: 33,058,965 (GRCm39)		probably null	Het
Dnah10	T	C	5: 124,896,476 (GRCm39)		probably null	Het
Dsg2	T	C	18: 20,712,185 (GRCm39)	F107S	probably damaging	Het
Dthd1	A	G	5: 63,000,300 (GRCm39)	I541V	probably benign	Het
Eml6	G	A	11: 29,783,049 (GRCm39)		probably benign	Het
Fermt2	A	C	14: 45,741,948 (GRCm39)		probably null	Het
Gimap8	A	T	6: 48,635,730 (GRCm39)	R498S	possibly damaging	Het
Glis1	A	G	4: 107,489,488 (GRCm39)	N692D	possibly damaging	Het
Grtp1	G	A	8: 13,239,755 (GRCm39)		probably benign	Het
Hecw1	G	T	13: 14,420,421 (GRCm39)	Q1001K	possibly damaging	Het
Hydin	T	C	8: 111,130,927 (GRCm39)	V606A	possibly damaging	Het
Krt33b	T	A	11: 99,914,835 (GRCm39)	N388I	probably benign	Het
Lipf	T	C	19: 33,950,438 (GRCm39)	Y277H	probably damaging	Het
Lmod1	A	G	1: 135,291,654 (GRCm39)	K170E	probably benign	Het
Lrrtm1	A	T	6: 77,220,635 (GRCm39)	M31L	probably benign	Het
Man1c1	A	G	4: 134,430,263 (GRCm39)	I173T	possibly damaging	Het
Med17	T	C	9: 15,187,187 (GRCm39)	K196E	probably damaging	Het
Mmp25	T	A	17: 23,863,765 (GRCm39)	I22F	probably benign	Het
Nrg3	T	A	14: 38,092,965 (GRCm39)	N540I	possibly damaging	Het
Nsun5	C	T	5: 135,404,317 (GRCm39)	Q375*	probably null	Het
Or52ad1	T	C	7: 102,995,272 (GRCm39)	M288V	probably benign	Het
Pcdh1	G	T	18: 38,322,815 (GRCm39)	A1006E	probably benign	Het
Pdss1	T	A	2: 22,796,799 (GRCm39)		probably null	Het
Plaa	G	A	4: 94,457,696 (GRCm39)	A758V	probably damaging	Het
Prl6a1	T	A	13: 27,499,303 (GRCm39)	W24R	probably damaging	Het
Ptk7	T	C	17: 46,883,476 (GRCm39)	H863R	probably damaging	Het
Rbm10	T	C	X: 20,513,934 (GRCm39)	L429P	possibly damaging	Het
Rhou	T	C	8: 124,387,880 (GRCm39)	I204T	possibly damaging	Het
Serpind1	G	T	16: 17,154,972 (GRCm39)	M266I	probably benign	Het
Sgcg	A	T	14: 61,467,074 (GRCm39)	F175L	probably damaging	Het
Slc2a2	T	G	3: 28,772,920 (GRCm39)	C238G	probably damaging	Het
Slc39a8	A	G	3: 135,592,584 (GRCm39)	M420V	probably benign	Het
Slc7a9	C	A	7: 35,163,167 (GRCm39)	Y457*	probably null	Het
Smpd3	C	T	8: 106,991,452 (GRCm39)	R367H	probably damaging	Het
Sntb2	T	C	8: 107,662,729 (GRCm39)	V99A	probably benign	Het
Specc1l	T	G	10: 75,094,965 (GRCm39)	I796R	probably damaging	Het
Stfa2l1	G	T	16: 35,980,316 (GRCm39)	V29F	probably damaging	Het
Synrg	T	C	11: 83,885,180 (GRCm39)	F455S	probably damaging	Het
Tap2	T	C	17: 34,431,328 (GRCm39)	V422A	possibly damaging	Het
Tcf7	A	T	11: 52,173,610 (GRCm39)		probably null	Het
Tcp10a	A	G	17: 7,597,173 (GRCm39)	Y110C	probably damaging	Het
Thoc1	T	A	18: 9,959,255 (GRCm39)	S43R	probably damaging	Het
Tlr1	A	G	5: 65,083,251 (GRCm39)	V442A	probably damaging	Het
Tmub1	A	G	5: 24,650,922 (GRCm39)	*261Q	probably null	Het
Trpc3	G	A	3: 36,688,532 (GRCm39)	R836*	probably null	Het
Tsbp1	A	T	17: 34,640,836 (GRCm39)	H57L	possibly damaging	Het
Ube2u	T	C	4: 100,381,495 (GRCm39)	S185P	possibly damaging	Het
Vamp5	A	G	6: 72,346,323 (GRCm39)	V91A	probably benign	Het
Vcp	A	G	4: 42,980,846 (GRCm39)	Y755H	probably damaging	Het
Vmn1r35	A	T	6: 66,655,950 (GRCm39)	M73K	possibly damaging	Het
Vmn2r12	C	T	5: 109,239,397 (GRCm39)	E389K	probably damaging	Het
Wdfy3	A	T	5: 102,091,988 (GRCm39)	F450L	probably benign	Het
Xpo4	G	T	14: 57,841,897 (GRCm39)	Q473K	probably benign	Het
Xpo7	A	G	14: 70,909,130 (GRCm39)	I797T	probably damaging	Het
Xylt1	C	A	7: 117,234,011 (GRCm39)	Q513K	probably benign	Het
Zfp229	T	C	17: 21,964,484 (GRCm39)	F238S	probably damaging	Het

Other mutations in Or52r1c

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01618:Or52r1c	APN	7	102,735,582 (GRCm39)	missense	probably benign	0.00
IGL02113:Or52r1c	APN	7	102,735,057 (GRCm39)	missense	possibly damaging	0.95
IGL02398:Or52r1c	APN	7	102,735,313 (GRCm39)	missense	probably damaging	1.00
IGL02718:Or52r1c	APN	7	102,734,790 (GRCm39)	missense	probably benign	0.01
IGL02941:Or52r1c	APN	7	102,735,528 (GRCm39)	missense	probably benign	0.05
IGL02942:Or52r1c	APN	7	102,735,405 (GRCm39)	missense	probably benign	0.07
R0496:Or52r1c	UTSW	7	102,734,797 (GRCm39)	missense	probably damaging	1.00
R0511:Or52r1c	UTSW	7	102,735,058 (GRCm39)	missense	probably damaging	1.00
R0646:Or52r1c	UTSW	7	102,735,358 (GRCm39)	missense	probably damaging	0.99
R1652:Or52r1c	UTSW	7	102,735,013 (GRCm39)	missense	probably benign	0.04
R2312:Or52r1c	UTSW	7	102,735,633 (GRCm39)	missense	probably damaging	0.99
R2849:Or52r1c	UTSW	7	102,735,319 (GRCm39)	missense	probably damaging	1.00
R3176:Or52r1c	UTSW	7	102,734,957 (GRCm39)	missense	probably damaging	1.00
R3276:Or52r1c	UTSW	7	102,734,957 (GRCm39)	missense	probably damaging	1.00
R3708:Or52r1c	UTSW	7	102,735,501 (GRCm39)	missense	probably damaging	1.00
R4737:Or52r1c	UTSW	7	102,735,121 (GRCm39)	missense	probably damaging	1.00
R5045:Or52r1c	UTSW	7	102,735,664 (GRCm39)	missense	probably benign	0.00
R5172:Or52r1c	UTSW	7	102,734,884 (GRCm39)	missense	probably damaging	1.00
R5849:Or52r1c	UTSW	7	102,734,728 (GRCm39)	start codon destroyed	probably null	0.02
R6294:Or52r1c	UTSW	7	102,734,874 (GRCm39)	missense	probably benign	0.01
R6846:Or52r1c	UTSW	7	102,735,265 (GRCm39)	missense	possibly damaging	0.88
R6869:Or52r1c	UTSW	7	102,735,075 (GRCm39)	missense	possibly damaging	0.47
R6936:Or52r1c	UTSW	7	102,735,021 (GRCm39)	missense	probably damaging	0.97
R7133:Or52r1c	UTSW	7	102,735,205 (GRCm39)	missense	probably damaging	0.99
R7724:Or52r1c	UTSW	7	102,735,470 (GRCm39)	nonsense	probably null
R7772:Or52r1c	UTSW	7	102,735,388 (GRCm39)	missense	probably benign	0.23
R9341:Or52r1c	UTSW	7	102,735,324 (GRCm39)	nonsense	probably null
R9343:Or52r1c	UTSW	7	102,735,324 (GRCm39)	nonsense	probably null
R9718:Or52r1c	UTSW	7	102,735,196 (GRCm39)	missense	probably benign	0.00
R9752:Or52r1c	UTSW	7	102,735,669 (GRCm39)	missense	probably benign	0.03

Predicted Primers

PCR Primer
(F):5'- ACCAGAGTCAATCGTGGATATGG -3'
(R):5'- CTGACCTGTGGTGATGTCAG -3'

Sequencing Primer
(F):5'- CAATCGTGGATATGGACTCTTTG -3'
(R):5'- TGTCAGTGTGGGTAAATCAAGAC -3'

Posted On

2014-12-29