Mutagenetix > Incidental Mutation

Incidental Mutation 'R2920:Lin7b'

255470

Institutional Source

Beutler Lab

Gene Symbol

Lin7b

Ensembl Gene

ENSMUSG00000003872

Gene Name

lin-7 homolog B, crumbs cell polarity complex component

Synonyms

Veli2, LIN-7B, MALS-2

MMRRC Submission

040505-MU

Accession Numbers

Essential gene?

Possibly non essential (E-score: 0.498) question?

Stock #

R2920 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

45017315-45019988 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 45017821 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Valine to Alanine at position 170 (V170A)

Ref Sequence

ENSEMBL: ENSMUSP00000003971 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000003961] [ENSMUST00000003971] [ENSMUST00000211067] [ENSMUST00000210865]

AlphaFold

O88951

PDB Structure

Solution Structure of mLin-2/mLin-7 L27 Domain Complex [SOLUTION NMR]

Predicted Effect

probably benign
Transcript: ENSMUST00000003961

SMART Domains

Protein: ENSMUSP00000003961
Gene: ENSMUSG00000003863

Domain	Start	End	E-Value	Type
coiled coil region	27	129	N/A	INTRINSIC
coiled coil region	167	426	N/A	INTRINSIC
coiled coil region	448	500	N/A	INTRINSIC
low complexity region	534	550	N/A	INTRINSIC
coiled coil region	597	642	N/A	INTRINSIC
low complexity region	651	672	N/A	INTRINSIC
low complexity region	707	719	N/A	INTRINSIC
SAM	835	904	1.46e-10	SMART
SAM	950	1017	8.22e-5	SMART
SAM	1038	1110	3.58e-5	SMART
low complexity region	1156	1169	N/A	INTRINSIC

Predicted Effect

possibly damaging
Transcript: ENSMUST00000003971
AA Change: V170A

PolyPhen 2 Score 0.479 (Sensitivity: 0.89; Specificity: 0.90)

SMART Domains

Protein: ENSMUSP00000003971
Gene: ENSMUSG00000003872
AA Change: V170A

Domain	Start	End	E-Value	Type
L27	13	68	1.96e-12	SMART
low complexity region	71	84	N/A	INTRINSIC
PDZ	101	175	6.16e-24	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000058665

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000124128
AA Change: V69A

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000209226

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000209424

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000209756

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000210216

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000210360

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000211463

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000211416

Predicted Effect

probably benign
Transcript: ENSMUST00000211067

Predicted Effect

probably benign
Transcript: ENSMUST00000210865

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000210586

Meta Mutation Damage Score

0.3085

Coding Region Coverage

1x: 99.1%
3x: 98.6%
10x: 97.3%
20x: 95.0%

Validation Efficiency

96% (48/50)

MGI Phenotype

PHENOTYPE: Mice homozygous for disruptions in this gene display a normal phenotype. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 47 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adgb	A	G	10: 10,265,987 (GRCm39)	Y1025H	probably damaging	Het
Adgrv1	C	T	13: 81,596,984 (GRCm39)	A4122T	probably benign	Het
Aloxe3	C	T	11: 69,033,749 (GRCm39)	T621I	probably damaging	Het
Atp2b3	A	C	X: 72,577,526 (GRCm39)	T318P	probably benign	Het
Atrx	A	T	X: 104,874,474 (GRCm39)	V1962D	probably benign	Het
Chl1	C	A	6: 103,672,304 (GRCm39)	T531K	probably damaging	Het
Clca3b	T	A	3: 144,543,614 (GRCm39)	D405V	probably benign	Het
Clca3b	C	T	3: 144,552,692 (GRCm39)	D115N	probably benign	Het
Comtd1	A	G	14: 21,897,686 (GRCm39)	L149P	possibly damaging	Het
Cops7a	A	G	6: 124,939,325 (GRCm39)	V108A	probably benign	Het
Crebbp	A	G	16: 3,936,946 (GRCm39)	V343A	probably damaging	Het
Edrf1	T	A	7: 133,269,301 (GRCm39)	D1109E	probably benign	Het
Elmo3	A	G	8: 106,034,691 (GRCm39)	E359G	possibly damaging	Het
Ep400	C	A	5: 110,903,780 (GRCm39)	G273V	probably damaging	Het
Fgfr3	A	G	5: 33,891,284 (GRCm39)	N516S	probably damaging	Het
Glb1l	T	A	1: 75,185,834 (GRCm39)	E31D	probably benign	Het
Hdac1-ps	A	G	17: 78,800,275 (GRCm39)	D422G	probably damaging	Het
Il12rb2	C	T	6: 67,337,552 (GRCm39)	V110I	probably damaging	Het
Ints3	T	C	3: 90,300,469 (GRCm39)	E884G	probably benign	Het
Lrch2	A	T	X: 146,256,026 (GRCm39)	V750E	probably damaging	Het
Mepe	C	T	5: 104,486,113 (GRCm39)	R418C	probably damaging	Het
Mettl25	A	T	10: 105,601,038 (GRCm39)		probably null	Het
Mphosph9	G	A	5: 124,399,069 (GRCm39)	T982I	probably benign	Het
Mslnl	G	A	17: 25,961,908 (GRCm39)	V128M	probably damaging	Het
Myo10	G	T	15: 25,801,226 (GRCm39)	V1472L	probably damaging	Het
Myo9b	A	G	8: 71,778,501 (GRCm39)	K445R	probably damaging	Het
Ntng2	T	C	2: 29,094,223 (GRCm39)	M383V	probably benign	Het
Or13n4	C	T	7: 106,423,571 (GRCm39)	R54Q	probably benign	Het
Or2z2	T	C	11: 58,346,403 (GRCm39)	Y124C	probably damaging	Het
Or7a37	A	C	10: 78,805,846 (GRCm39)	D121A	probably damaging	Het
Pak6	A	T	2: 118,524,488 (GRCm39)		probably benign	Het
Pcdh8	G	T	14: 80,006,154 (GRCm39)	P803Q	possibly damaging	Het
Pfkfb3	C	T	2: 11,489,138 (GRCm39)	V286I	probably benign	Het
Rbp3	C	T	14: 33,677,975 (GRCm39)	T641M	probably damaging	Het
Rint1	A	G	5: 24,010,400 (GRCm39)	E203G	probably benign	Het
Sdf2	G	C	11: 78,145,680 (GRCm39)	V126L	probably damaging	Het
Slc13a5	T	C	11: 72,138,617 (GRCm39)	E442G	possibly damaging	Het
Slc14a2	G	T	18: 78,201,512 (GRCm39)	S669*	probably null	Het
Slc38a7	A	G	8: 96,572,571 (GRCm39)	I157T	possibly damaging	Het
Slc4a5	T	C	6: 83,241,369 (GRCm39)	L215P	probably damaging	Het
Tbc1d9	T	C	8: 83,937,098 (GRCm39)	V60A	probably benign	Het
Tcerg1l	T	C	7: 137,850,108 (GRCm39)	R422G	probably damaging	Het
Tmem107	T	C	11: 68,962,247 (GRCm39)	L68P	probably damaging	Het
Ugt2b5	A	G	5: 87,273,266 (GRCm39)	F467L	possibly damaging	Het
Vmn1r19	A	T	6: 57,381,909 (GRCm39)	N154I	probably benign	Het
Vmn2r69	T	A	7: 85,060,973 (GRCm39)	I204L	probably benign	Het
Zbtb1	T	A	12: 76,432,619 (GRCm39)	S202T	possibly damaging	Het

Other mutations in Lin7b

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01448:Lin7b	APN	7	45,018,624 (GRCm39)	missense	probably damaging	1.00
R0539:Lin7b	UTSW	7	45,019,326 (GRCm39)	unclassified	probably benign
R1730:Lin7b	UTSW	7	45,019,351 (GRCm39)	missense	probably benign
R1783:Lin7b	UTSW	7	45,019,351 (GRCm39)	missense	probably benign
R2330:Lin7b	UTSW	7	45,019,337 (GRCm39)	critical splice donor site	probably null
R5646:Lin7b	UTSW	7	45,018,617 (GRCm39)	missense	probably damaging	0.96
R7155:Lin7b	UTSW	7	45,019,651 (GRCm39)	missense	probably damaging	0.99
R7487:Lin7b	UTSW	7	45,019,364 (GRCm39)	missense	possibly damaging	0.81
R7576:Lin7b	UTSW	7	45,018,649 (GRCm39)	nonsense	probably null
R7603:Lin7b	UTSW	7	45,017,856 (GRCm39)	unclassified	probably benign

Predicted Primers

PCR Primer
(F):5'- AAATGTTGAAGGCCGCTGTG -3'
(R):5'- TGCCTAAAGTTGGTGATCCAC -3'

Sequencing Primer
(F):5'- GCTCACTGGCCTGATTTGG -3'
(R):5'- TGCCTAAAGTTGGTGATCCACTAGAG -3'

Posted On

2014-12-29