Incidental Mutation 'R2936:Trav6n-6'
ID 256322
Institutional Source Beutler Lab
Gene Symbol Trav6n-6
Ensembl Gene ENSMUSG00000076802
Gene Name T cell receptor alpha variable 6N-6
Synonyms ENSMUSG00000063944, Gm10895
Accession Numbers
Essential gene? Not available question?
Stock # R2936 (G1)
Quality Score 225
Status Not validated
Chromosome 14
Chromosomal Location 53370157-53370594 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to G at 53370341 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Threonine to Alanine at position 31 (T31A)
Ref Sequence ENSEMBL: ENSMUSP00000137708 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000103613] [ENSMUST00000181793]
AlphaFold A0A075B623
Predicted Effect probably benign
Transcript: ENSMUST00000103613
AA Change: T12A

PolyPhen 2 Score 0.013 (Sensitivity: 0.96; Specificity: 0.78)
SMART Domains Protein: ENSMUSP00000100390
Gene: ENSMUSG00000076802
AA Change: T12A

DomainStartEndE-ValueType
Pfam:V-set 2 95 4.5e-14 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000181793
AA Change: T31A

PolyPhen 2 Score 0.190 (Sensitivity: 0.92; Specificity: 0.87)
SMART Domains Protein: ENSMUSP00000137708
Gene: ENSMUSG00000076802
AA Change: T31A

DomainStartEndE-ValueType
Pfam:V-set 20 114 1e-14 PFAM
Predicted Effect noncoding transcript
Transcript: ENSMUST00000200113
Coding Region Coverage
  • 1x: 99.2%
  • 3x: 98.6%
  • 10x: 97.3%
  • 20x: 95.1%
Validation Efficiency
Allele List at MGI
Other mutations in this stock
Total: 20 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
4930503L19Rik A T 18: 70,601,519 (GRCm39) M121K probably damaging Het
Cacybp A T 1: 160,035,947 (GRCm39) probably null Het
Cd6 T C 19: 10,773,686 (GRCm39) probably null Het
Cep162 T C 9: 87,109,467 (GRCm39) T379A probably benign Het
Gaa T C 11: 119,174,550 (GRCm39) V799A probably benign Het
Gm16503 A G 4: 147,625,704 (GRCm39) D66G unknown Het
Hspa9 T C 18: 35,081,067 (GRCm39) T205A probably damaging Het
Ihh A G 1: 74,985,705 (GRCm39) I260T probably damaging Het
Jcad T A 18: 4,675,153 (GRCm39) Y972N probably benign Het
Magi2 A AG 5: 20,807,459 (GRCm39) probably null Het
Mmp12 A G 9: 7,357,819 (GRCm39) Q341R probably benign Het
Nup155 T C 15: 8,172,533 (GRCm39) S840P possibly damaging Het
Or4l15 A T 14: 50,197,611 (GRCm39) V306E probably benign Het
Pde4b C T 4: 102,458,742 (GRCm39) A466V probably damaging Het
Pde5a A G 3: 122,587,968 (GRCm39) E378G probably damaging Het
Rad54l T C 4: 115,980,076 (GRCm39) probably benign Het
Stbd1 C T 5: 92,751,119 (GRCm39) P51L possibly damaging Het
Tent4a G A 13: 69,650,446 (GRCm39) T621I possibly damaging Het
Tnfaip3 A G 10: 18,887,357 (GRCm39) F56S probably damaging Het
Tnr A C 1: 159,715,932 (GRCm39) Y898S probably damaging Het
Other mutations in Trav6n-6
AlleleSourceChrCoordTypePredicted EffectPPH Score
R8192:Trav6n-6 UTSW 14 53,370,497 (GRCm39) missense probably damaging 1.00
Predicted Primers
Posted On 2014-12-31