Mutagenetix > Incidental Mutation

Incidental Mutation 'R3005:Nlrp4c'

257415

Institutional Source

Beutler Lab

Gene Symbol

Nlrp4c

Ensembl Gene

ENSMUSG00000034690

Gene Name

NLR family, pyrin domain containing 4C

Synonyms

Nalp-alpha, Rnh2, Nalp4c

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.067) question?

Stock #

R3005 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

6045161-6105150 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

G to A at 6065525 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Valine to Methionine at position 142 (V142M)

Ref Sequence

ENSEMBL: ENSMUSP00000146613 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000037728] [ENSMUST00000121583] [ENSMUST00000208360]

AlphaFold

Q3TKR3

Predicted Effect

probably benign
Transcript: ENSMUST00000037728
AA Change: V142M

PolyPhen 2 Score 0.285 (Sensitivity: 0.91; Specificity: 0.88)

SMART Domains

Protein: ENSMUSP00000046503
Gene: ENSMUSG00000034690
AA Change: V142M

Domain	Start	End	E-Value	Type
PYRIN	6	89	1.41e-34	SMART
Pfam:NACHT	148	317	4.5e-40	PFAM
LRR	689	716	2.91e0	SMART
LRR	718	745	1.49e1	SMART
LRR	746	772	2.5e1	SMART
LRR	774	801	6.24e1	SMART
LRR	802	829	3.07e-1	SMART
LRR	831	858	4.11e-1	SMART
LRR	859	886	3.31e-6	SMART
LRR	888	915	6.16e0	SMART
LRR	916	943	9.24e1	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000121583
AA Change: V142M

PolyPhen 2 Score 0.285 (Sensitivity: 0.91; Specificity: 0.88)

SMART Domains

Protein: ENSMUSP00000113824
Gene: ENSMUSG00000034690
AA Change: V142M

Domain	Start	End	E-Value	Type
PYRIN	6	89	1.41e-34	SMART
Pfam:NACHT	148	317	1.7e-39	PFAM
LRR	689	716	2.91e0	SMART
LRR	718	745	1.49e1	SMART
LRR	746	772	2.5e1	SMART
LRR	774	801	6.24e1	SMART
LRR	802	829	3.07e-1	SMART
LRR	831	858	4.11e-1	SMART
LRR	859	886	3.31e-6	SMART
LRR	888	915	6.16e0	SMART
LRR	916	943	9.24e1	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000207267

Predicted Effect

probably benign
Transcript: ENSMUST00000208360
AA Change: V142M

PolyPhen 2 Score 0.285 (Sensitivity: 0.91; Specificity: 0.88)

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.3%
20x: 95.1%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 19 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
0610009O20Rik	T	A	18: 38,259,959 (GRCm38)	N405K	possibly damaging	Het
4931406P16Rik	T	C	7: 34,284,784 (GRCm38)	E138G	probably damaging	Het
Cep162	C	A	9: 87,232,060 (GRCm38)	V320L	probably benign	Het
Cnga1	T	A	5: 72,605,107 (GRCm38)	I355F	probably damaging	Het
Csnk1e	T	C	15: 79,438,805 (GRCm38)	I15V	probably benign	Het
Exosc8	T	C	3: 54,732,147 (GRCm38)		probably null	Het
Gstm3	G	T	3: 107,967,607 (GRCm38)	Q110K	probably benign	Het
Hace1	G	A	10: 45,648,863 (GRCm38)	G242R	probably damaging	Het
Lcn6	T	A	2: 25,677,249 (GRCm38)		probably null	Het
Msh6	A	G	17: 87,988,285 (GRCm38)	E1088G	probably benign	Het
Nup50	G	A	15: 84,929,460 (GRCm38)		probably null	Het
Olfr577	C	T	7: 102,973,258 (GRCm38)	V245I	possibly damaging	Het
Ppp2r5a	A	T	1: 191,358,976 (GRCm38)	F218Y	probably damaging	Het
Ptov1	T	C	7: 44,864,462 (GRCm38)	N52S	probably damaging	Het
Rif1	G	A	2: 52,082,764 (GRCm38)	A303T	probably damaging	Het
Ror1	T	A	4: 100,441,764 (GRCm38)	V778E	probably damaging	Het
Tcaf3	A	T	6: 42,594,044 (GRCm38)	L258H	probably damaging	Het
Utp20	C	A	10: 88,777,455 (GRCm38)	K1321N	probably damaging	Het
Vmn2r54	T	A	7: 12,615,294 (GRCm38)	Q787L	probably benign	Het

Other mutations in Nlrp4c

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00727:Nlrp4c	APN	7	6,066,702 (GRCm38)	missense	possibly damaging	0.80
IGL01458:Nlrp4c	APN	7	6,100,784 (GRCm38)	missense	possibly damaging	0.94
IGL01464:Nlrp4c	APN	7	6,100,784 (GRCm38)	missense	possibly damaging	0.94
IGL01470:Nlrp4c	APN	7	6,100,784 (GRCm38)	missense	possibly damaging	0.94
IGL01481:Nlrp4c	APN	7	6,100,784 (GRCm38)	missense	possibly damaging	0.94
IGL01531:Nlrp4c	APN	7	6,060,656 (GRCm38)	missense	probably damaging	1.00
IGL01595:Nlrp4c	APN	7	6,066,112 (GRCm38)	nonsense	probably null
IGL02087:Nlrp4c	APN	7	6,092,583 (GRCm38)	missense	probably damaging	1.00
IGL02226:Nlrp4c	APN	7	6,066,829 (GRCm38)	missense	possibly damaging	0.78
IGL02588:Nlrp4c	APN	7	6,084,648 (GRCm38)	missense	probably benign	0.25
IGL02822:Nlrp4c	APN	7	6,065,727 (GRCm38)	missense	probably damaging	1.00
IGL02884:Nlrp4c	APN	7	6,098,952 (GRCm38)	missense	probably damaging	1.00
IGL02943:Nlrp4c	APN	7	6,065,975 (GRCm38)	missense	probably damaging	0.96
IGL03017:Nlrp4c	APN	7	6,084,680 (GRCm38)	missense	probably benign	0.23
R0347:Nlrp4c	UTSW	7	6,066,416 (GRCm38)	missense	possibly damaging	0.69
R0579:Nlrp4c	UTSW	7	6,060,845 (GRCm38)	missense	probably benign	0.05
R1051:Nlrp4c	UTSW	7	6,065,943 (GRCm38)	missense	probably benign	0.01
R1596:Nlrp4c	UTSW	7	6,066,778 (GRCm38)	missense	probably benign
R1636:Nlrp4c	UTSW	7	6,066,738 (GRCm38)	missense	possibly damaging	0.64
R1739:Nlrp4c	UTSW	7	6,073,222 (GRCm38)	missense	probably damaging	1.00
R1766:Nlrp4c	UTSW	7	6,073,114 (GRCm38)	missense	probably benign	0.00
R1824:Nlrp4c	UTSW	7	6,066,956 (GRCm38)	splice site	probably null
R1827:Nlrp4c	UTSW	7	6,065,766 (GRCm38)	missense	probably damaging	1.00
R1858:Nlrp4c	UTSW	7	6,084,656 (GRCm38)	missense	probably benign	0.02
R1902:Nlrp4c	UTSW	7	6,065,819 (GRCm38)	missense	probably damaging	0.98
R2217:Nlrp4c	UTSW	7	6,073,114 (GRCm38)	missense	probably benign
R2415:Nlrp4c	UTSW	7	6,066,048 (GRCm38)	missense	probably damaging	1.00
R3004:Nlrp4c	UTSW	7	6,065,525 (GRCm38)	missense	probably benign	0.28
R3410:Nlrp4c	UTSW	7	6,092,570 (GRCm38)	missense	possibly damaging	0.69
R3411:Nlrp4c	UTSW	7	6,092,570 (GRCm38)	missense	possibly damaging	0.69
R3710:Nlrp4c	UTSW	7	6,065,628 (GRCm38)	missense	probably damaging	0.99
R4072:Nlrp4c	UTSW	7	6,072,710 (GRCm38)	missense	probably benign	0.00
R4073:Nlrp4c	UTSW	7	6,072,710 (GRCm38)	missense	probably benign	0.00
R4075:Nlrp4c	UTSW	7	6,072,710 (GRCm38)	missense	probably benign	0.00
R4076:Nlrp4c	UTSW	7	6,072,710 (GRCm38)	missense	probably benign	0.00
R4542:Nlrp4c	UTSW	7	6,100,827 (GRCm38)	nonsense	probably null
R4709:Nlrp4c	UTSW	7	6,065,425 (GRCm38)	missense	probably benign	0.31
R4776:Nlrp4c	UTSW	7	6,066,126 (GRCm38)	missense	probably benign	0.41
R5043:Nlrp4c	UTSW	7	6,066,825 (GRCm38)	missense	probably benign	0.01
R5258:Nlrp4c	UTSW	7	6,066,623 (GRCm38)	missense	probably benign	0.06
R6164:Nlrp4c	UTSW	7	6,092,508 (GRCm38)	missense	probably damaging	1.00
R6383:Nlrp4c	UTSW	7	6,066,053 (GRCm38)	missense	probably benign
R6650:Nlrp4c	UTSW	7	6,065,949 (GRCm38)	missense	probably damaging	0.99
R6810:Nlrp4c	UTSW	7	6,066,755 (GRCm38)	missense	probably damaging	1.00
R7095:Nlrp4c	UTSW	7	6,060,793 (GRCm38)	missense	probably damaging	0.97
R7102:Nlrp4c	UTSW	7	6,065,709 (GRCm38)	nonsense	probably null
R7104:Nlrp4c	UTSW	7	6,065,709 (GRCm38)	nonsense	probably null
R7232:Nlrp4c	UTSW	7	6,065,709 (GRCm38)	nonsense	probably null
R7444:Nlrp4c	UTSW	7	6,092,596 (GRCm38)	nonsense	probably null
R7705:Nlrp4c	UTSW	7	6,072,636 (GRCm38)	missense	probably damaging	0.97
R7966:Nlrp4c	UTSW	7	6,066,323 (GRCm38)	missense	probably damaging	0.99
R8506:Nlrp4c	UTSW	7	6,100,776 (GRCm38)	missense	possibly damaging	0.47
R8677:Nlrp4c	UTSW	7	6,072,645 (GRCm38)	missense	probably damaging	0.99
R8708:Nlrp4c	UTSW	7	6,065,604 (GRCm38)	missense	probably damaging	1.00
R8838:Nlrp4c	UTSW	7	6,066,338 (GRCm38)	missense
R9031:Nlrp4c	UTSW	7	6,104,609 (GRCm38)	makesense	probably null
R9193:Nlrp4c	UTSW	7	6,092,622 (GRCm38)	missense	probably benign
R9329:Nlrp4c	UTSW	7	6,065,499 (GRCm38)	missense	probably benign
R9388:Nlrp4c	UTSW	7	6,066,875 (GRCm38)	nonsense	probably null
R9474:Nlrp4c	UTSW	7	6,065,627 (GRCm38)	missense	possibly damaging	0.83
R9567:Nlrp4c	UTSW	7	6,060,625 (GRCm38)	missense	probably benign	0.17
R9702:Nlrp4c	UTSW	7	6,065,802 (GRCm38)	missense	probably benign	0.00
X0060:Nlrp4c	UTSW	7	6,065,918 (GRCm38)	missense	probably damaging	1.00
Z1088:Nlrp4c	UTSW	7	6,066,636 (GRCm38)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- TAGGTCAGACTATGTGGATGAATG -3'
(R):5'- CAATTCTGCCAGGCTTGCTC -3'

Sequencing Primer
(F):5'- GTGGATGAATGTTTAACTTAACGTTG -3'
(R):5'- GCCAGGCTTGCTCTCTTCATC -3'

Posted On

2015-01-11