Incidental Mutation 'R0329:Gbf1'
ID 25972
Institutional Source Beutler Lab
Gene Symbol Gbf1
Ensembl Gene ENSMUSG00000025224
Gene Name golgi-specific brefeldin A-resistance factor 1
Synonyms 1700083E03Rik
MMRRC Submission 038538-MU
Accession Numbers
Essential gene? Essential (E-score: 1.000) question?
Stock # R0329 (G1)
Quality Score 225
Status Validated
Chromosome 19
Chromosomal Location 46140948-46274949 bp(+) (GRCm39)
Type of Mutation critical splice donor site (1 bp from exon)
DNA Base Change (assembly) G to A at 46260709 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change
Ref Sequence ENSEMBL: ENSMUSP00000135062 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000026254] [ENSMUST00000176992]
AlphaFold Q6DFZ1
Predicted Effect probably null
Transcript: ENSMUST00000026254
SMART Domains Protein: ENSMUSP00000026254
Gene: ENSMUSG00000025224

DomainStartEndE-ValueType
low complexity region 270 288 N/A INTRINSIC
Pfam:Sec7_N 400 551 3.4e-29 PFAM
Sec7 696 884 8.55e-91 SMART
low complexity region 1198 1216 N/A INTRINSIC
low complexity region 1281 1296 N/A INTRINSIC
low complexity region 1773 1793 N/A INTRINSIC
low complexity region 1802 1820 N/A INTRINSIC
Predicted Effect noncoding transcript
Transcript: ENSMUST00000130184
Predicted Effect noncoding transcript
Transcript: ENSMUST00000176422
Predicted Effect noncoding transcript
Transcript: ENSMUST00000176853
Predicted Effect probably null
Transcript: ENSMUST00000176992
SMART Domains Protein: ENSMUSP00000135062
Gene: ENSMUSG00000025224

DomainStartEndE-ValueType
low complexity region 216 234 N/A INTRINSIC
Pfam:Sec7_N 343 498 1.5e-35 PFAM
Sec7 642 830 8.55e-91 SMART
low complexity region 1144 1162 N/A INTRINSIC
low complexity region 1227 1242 N/A INTRINSIC
low complexity region 1715 1735 N/A INTRINSIC
low complexity region 1744 1762 N/A INTRINSIC
Predicted Effect noncoding transcript
Transcript: ENSMUST00000177406
Predicted Effect probably benign
Transcript: ENSMUST00000177512
Meta Mutation Damage Score 0.9589 question?
Coding Region Coverage
  • 1x: 98.9%
  • 3x: 97.8%
  • 10x: 95.0%
  • 20x: 89.0%
Validation Efficiency 99% (107/108)
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the Sec7 domain family. The encoded protein is a guanine nucleotide exchange factor that regulates the recruitment of proteins to membranes by mediating GDP to GTP exchange. The encoded protein is localized to the Golgi apparatus and plays a role in vesicular trafficking by activating ADP ribosylation factor 1. The encoded protein has also been identified as an important host factor for viral replication. Multiple transcript variants have been observed for this gene. [provided by RefSeq, Dec 2010]
Allele List at MGI
Other mutations in this stock
Total: 107 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abca13 A T 11: 9,349,430 (GRCm39) H3668L probably damaging Het
Acsbg3 A T 17: 57,190,631 (GRCm39) I400F probably benign Het
Acvr1c T C 2: 58,174,850 (GRCm39) T313A probably damaging Het
Adam28 T C 14: 68,855,188 (GRCm39) K651R probably damaging Het
Adamtsl3 A T 7: 82,171,198 (GRCm39) D417V probably damaging Het
Adgrf4 A T 17: 42,978,204 (GRCm39) C380S probably damaging Het
AI597479 T G 1: 43,150,277 (GRCm39) L129R probably benign Het
Anpep C T 7: 79,488,004 (GRCm39) E518K probably benign Het
Anxa7 A C 14: 20,519,566 (GRCm39) probably null Het
Arb2a T A 13: 77,910,070 (GRCm39) probably benign Het
Arhgap22 A G 14: 33,091,374 (GRCm39) R650G possibly damaging Het
Atp8a1 T A 5: 67,969,416 (GRCm39) probably benign Het
Bcr C T 10: 75,017,466 (GRCm39) T1209I possibly damaging Het
Bmpr1a C T 14: 34,151,734 (GRCm39) S185N probably benign Het
Calcoco1 A T 15: 102,624,198 (GRCm39) M246K probably benign Het
Casp12 T A 9: 5,345,534 (GRCm39) probably benign Het
Ccno T A 13: 113,126,530 (GRCm39) L333Q probably damaging Het
Cdhr2 T A 13: 54,882,614 (GRCm39) probably benign Het
Cftr T A 6: 18,226,096 (GRCm39) M318K probably null Het
Ckmt2 T A 13: 92,011,322 (GRCm39) D96V possibly damaging Het
Cnnm1 C T 19: 43,430,349 (GRCm39) P489L probably damaging Het
Cntnap1 A T 11: 101,079,135 (GRCm39) D1175V probably damaging Het
Cpne5 A T 17: 29,430,634 (GRCm39) L92H probably damaging Het
Crcp C A 5: 130,071,083 (GRCm39) Q61K possibly damaging Het
Crppa C T 12: 36,431,837 (GRCm39) A22V possibly damaging Het
Dcaf8 T A 1: 172,014,978 (GRCm39) D414E probably benign Het
Ddx28 T C 8: 106,736,877 (GRCm39) T394A probably benign Het
Ddx55 T C 5: 124,697,210 (GRCm39) F191L probably benign Het
Dnaaf1 T C 8: 120,322,756 (GRCm39) probably benign Het
Dnaaf2 C A 12: 69,244,518 (GRCm39) R181L probably damaging Het
Elac2 A G 11: 64,870,136 (GRCm39) Y67C probably damaging Het
Elf5 A G 2: 103,260,765 (GRCm39) probably benign Het
Emcn T A 3: 137,122,575 (GRCm39) probably benign Het
Erbb4 T C 1: 68,337,439 (GRCm39) probably benign Het
Erbin C A 13: 104,005,373 (GRCm39) C114F probably damaging Het
Etfdh T C 3: 79,517,151 (GRCm39) I353V probably benign Het
Fads2b T A 2: 85,348,895 (GRCm39) R72S probably benign Het
Fbxl12 C T 9: 20,549,776 (GRCm39) G316D probably damaging Het
Gbp2b T G 3: 142,313,937 (GRCm39) S406A probably benign Het
Gli3 T G 13: 15,898,143 (GRCm39) L741R probably damaging Het
Gmip G T 8: 70,263,468 (GRCm39) S70I probably benign Het
Gnptab T C 10: 88,276,171 (GRCm39) S1153P probably damaging Het
Gp1ba A G 11: 70,531,235 (GRCm39) probably benign Het
Gramd1a T C 7: 30,837,679 (GRCm39) D360G possibly damaging Het
Hectd4 T C 5: 121,397,927 (GRCm39) I285T probably benign Het
Hrh4 A G 18: 13,140,302 (GRCm39) probably benign Het
Hsp90b1 T C 10: 86,530,019 (GRCm39) E226G probably damaging Het
Hspa13 A T 16: 75,562,018 (GRCm39) D60E probably damaging Het
Htt T A 5: 34,974,478 (GRCm39) probably benign Het
Iqca1l T C 5: 24,750,783 (GRCm39) probably null Het
Kif14 G C 1: 136,423,764 (GRCm39) probably benign Het
Kit T G 5: 75,813,489 (GRCm39) V888G probably damaging Het
Lpin3 T C 2: 160,747,225 (GRCm39) V827A probably benign Het
Lrriq4 T C 3: 30,709,873 (GRCm39) S406P probably benign Het
Man2c1 T C 9: 57,048,467 (GRCm39) V777A probably benign Het
Mcm8 A G 2: 132,661,914 (GRCm39) K83E possibly damaging Het
Mep1a A G 17: 43,808,789 (GRCm39) probably null Het
Mtor T A 4: 148,568,837 (GRCm39) V1119E probably benign Het
Mybpc2 C T 7: 44,158,453 (GRCm39) A710T possibly damaging Het
Myo9a C G 9: 59,830,960 (GRCm39) T2368S probably damaging Het
Nbeal1 A G 1: 60,307,222 (GRCm39) Y1684C probably damaging Het
Npm3 A G 19: 45,737,965 (GRCm39) F11L probably benign Het
Nutf2 T A 8: 106,602,995 (GRCm39) S37T probably damaging Het
Obscn T A 11: 58,931,267 (GRCm39) I5790F probably damaging Het
Obscn A T 11: 58,943,332 (GRCm39) D4833E probably damaging Het
Or2g1 A T 17: 38,106,880 (GRCm39) M182L probably benign Het
Or7d9 T A 9: 20,197,153 (GRCm39) S61T possibly damaging Het
Or8g35 T C 9: 39,381,852 (GRCm39) T57A possibly damaging Het
Or9g4b T A 2: 85,616,147 (GRCm39) C97* probably null Het
Pcdhb1 A G 18: 37,400,077 (GRCm39) D676G possibly damaging Het
Pcif1 G T 2: 164,731,364 (GRCm39) R466L probably damaging Het
Pdk1 T C 2: 71,726,018 (GRCm39) probably benign Het
Phxr2 T C 10: 98,961,979 (GRCm39) probably benign Het
Pidd1 A T 7: 141,019,474 (GRCm39) probably benign Het
Plec A G 15: 76,075,618 (GRCm39) probably null Het
Polr1a T A 6: 71,943,400 (GRCm39) C1212S possibly damaging Het
Pot1a A G 6: 25,778,830 (GRCm39) probably benign Het
Prdm5 T C 6: 65,839,887 (GRCm39) probably benign Het
Primpol A T 8: 47,063,496 (GRCm39) N53K probably damaging Het
Pyroxd1 A G 6: 142,307,702 (GRCm39) I491V probably benign Het
Serpinb3b G T 1: 107,087,433 (GRCm39) N25K probably damaging Het
Slc9b1 C T 3: 135,078,996 (GRCm39) R218* probably null Het
Ssbp2 T A 13: 91,828,698 (GRCm39) probably null Het
Stat4 A G 1: 52,130,029 (GRCm39) probably benign Het
Steap4 T C 5: 8,025,829 (GRCm39) V130A possibly damaging Het
Stoml2 A G 4: 43,030,238 (GRCm39) probably null Het
Syne2 G T 12: 76,013,727 (GRCm39) G2974C probably benign Het
Tfdp2 T G 9: 96,188,946 (GRCm39) F200V probably damaging Het
Tgm4 T C 9: 122,877,622 (GRCm39) probably null Het
Tie1 C A 4: 118,341,924 (GRCm39) R175L probably benign Het
Tmem145 A G 7: 25,008,099 (GRCm39) probably benign Het
Tsacc A G 3: 88,190,169 (GRCm39) S94P possibly damaging Het
Tshz3 T A 7: 36,469,458 (GRCm39) D482E probably benign Het
Tspan33 T C 6: 29,711,091 (GRCm39) probably null Het
Ugt2b35 A G 5: 87,151,264 (GRCm39) K290R probably null Het
Unc80 T C 1: 66,713,246 (GRCm39) L2788P possibly damaging Het
Usp10 T A 8: 120,663,296 (GRCm39) C39* probably null Het
Utp20 T A 10: 88,653,841 (GRCm39) T260S probably benign Het
Vmn2r118 G T 17: 55,917,717 (GRCm39) T265K probably damaging Het
Vmn2r7 C A 3: 64,598,439 (GRCm39) C797F probably damaging Het
Vmn2r98 A C 17: 19,286,609 (GRCm39) H369P probably benign Het
Vps39 A T 2: 120,169,268 (GRCm39) Y245N possibly damaging Het
Wdr27 A G 17: 15,154,721 (GRCm39) probably benign Het
Ythdc2 A G 18: 44,998,127 (GRCm39) probably benign Het
Zcwpw2 C A 9: 117,843,123 (GRCm39) noncoding transcript Het
Zdhhc1 C A 8: 106,210,175 (GRCm39) A81S probably benign Het
Zfp729a G T 13: 67,768,473 (GRCm39) H585Q probably damaging Het
Other mutations in Gbf1
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00585:Gbf1 APN 19 46,272,688 (GRCm39) critical splice acceptor site probably null
IGL00988:Gbf1 APN 19 46,272,559 (GRCm39) critical splice donor site probably null
IGL01352:Gbf1 APN 19 46,253,654 (GRCm39) missense probably damaging 1.00
IGL01432:Gbf1 APN 19 46,268,434 (GRCm39) missense probably damaging 1.00
IGL01469:Gbf1 APN 19 46,267,803 (GRCm39) missense probably damaging 1.00
IGL01870:Gbf1 APN 19 46,274,108 (GRCm39) missense probably benign 0.00
IGL02019:Gbf1 APN 19 46,267,731 (GRCm39) missense possibly damaging 0.93
IGL02061:Gbf1 APN 19 46,267,697 (GRCm39) missense possibly damaging 0.65
IGL02126:Gbf1 APN 19 46,240,556 (GRCm39) missense probably damaging 0.97
IGL02272:Gbf1 APN 19 46,258,242 (GRCm39) missense probably damaging 1.00
IGL02346:Gbf1 APN 19 46,274,369 (GRCm39) missense probably damaging 1.00
IGL02491:Gbf1 APN 19 46,250,979 (GRCm39) unclassified probably benign
IGL03003:Gbf1 APN 19 46,244,094 (GRCm39) missense probably damaging 1.00
IGL03130:Gbf1 APN 19 46,255,787 (GRCm39) missense possibly damaging 0.82
IGL03376:Gbf1 APN 19 46,250,960 (GRCm39) missense possibly damaging 0.94
PIT4651001:Gbf1 UTSW 19 46,151,982 (GRCm39) missense probably benign
R0107:Gbf1 UTSW 19 46,273,267 (GRCm39) missense probably benign
R0139:Gbf1 UTSW 19 46,250,231 (GRCm39) missense probably damaging 1.00
R0180:Gbf1 UTSW 19 46,274,161 (GRCm39) missense probably benign
R0255:Gbf1 UTSW 19 46,242,549 (GRCm39) splice site probably benign
R0317:Gbf1 UTSW 19 46,242,459 (GRCm39) missense probably benign
R0372:Gbf1 UTSW 19 46,274,143 (GRCm39) missense probably benign
R0666:Gbf1 UTSW 19 46,250,983 (GRCm39) unclassified probably benign
R1463:Gbf1 UTSW 19 46,259,984 (GRCm39) unclassified probably benign
R1701:Gbf1 UTSW 19 46,250,114 (GRCm39) missense probably damaging 1.00
R1848:Gbf1 UTSW 19 46,260,476 (GRCm39) missense possibly damaging 0.90
R1962:Gbf1 UTSW 19 46,255,658 (GRCm39) missense probably damaging 1.00
R1965:Gbf1 UTSW 19 46,260,003 (GRCm39) missense probably damaging 1.00
R1966:Gbf1 UTSW 19 46,260,003 (GRCm39) missense probably damaging 1.00
R2177:Gbf1 UTSW 19 46,254,109 (GRCm39) missense probably benign
R2238:Gbf1 UTSW 19 46,152,057 (GRCm39) missense probably benign
R2239:Gbf1 UTSW 19 46,152,057 (GRCm39) missense probably benign
R2520:Gbf1 UTSW 19 46,253,806 (GRCm39) missense probably benign
R3821:Gbf1 UTSW 19 46,253,246 (GRCm39) missense probably damaging 0.99
R4681:Gbf1 UTSW 19 46,268,989 (GRCm39) missense probably benign 0.41
R4695:Gbf1 UTSW 19 46,247,606 (GRCm39) nonsense probably null
R4785:Gbf1 UTSW 19 46,256,834 (GRCm39) missense possibly damaging 0.89
R5202:Gbf1 UTSW 19 46,256,893 (GRCm39) missense probably benign 0.13
R5359:Gbf1 UTSW 19 46,272,164 (GRCm39) critical splice donor site probably null
R5468:Gbf1 UTSW 19 46,272,735 (GRCm39) missense possibly damaging 0.92
R5593:Gbf1 UTSW 19 46,260,963 (GRCm39) missense possibly damaging 0.91
R5595:Gbf1 UTSW 19 46,272,861 (GRCm39) missense possibly damaging 0.74
R5796:Gbf1 UTSW 19 46,272,782 (GRCm39) missense probably benign 0.08
R5938:Gbf1 UTSW 19 46,256,891 (GRCm39) missense probably damaging 1.00
R5957:Gbf1 UTSW 19 46,234,660 (GRCm39) critical splice donor site probably null
R6059:Gbf1 UTSW 19 46,253,687 (GRCm39) missense probably damaging 1.00
R6120:Gbf1 UTSW 19 46,267,760 (GRCm39) missense possibly damaging 0.83
R6239:Gbf1 UTSW 19 46,248,135 (GRCm39) missense probably benign 0.00
R6252:Gbf1 UTSW 19 46,259,995 (GRCm39) missense probably benign 0.33
R6310:Gbf1 UTSW 19 46,268,444 (GRCm39) missense probably damaging 0.96
R6787:Gbf1 UTSW 19 46,260,211 (GRCm39) missense probably benign
R6805:Gbf1 UTSW 19 46,250,946 (GRCm39) missense probably damaging 1.00
R6855:Gbf1 UTSW 19 46,268,380 (GRCm39) missense probably benign 0.00
R7313:Gbf1 UTSW 19 46,268,793 (GRCm39) missense possibly damaging 0.94
R7414:Gbf1 UTSW 19 46,271,797 (GRCm39) nonsense probably null
R7646:Gbf1 UTSW 19 46,272,111 (GRCm39) missense probably damaging 1.00
R7650:Gbf1 UTSW 19 46,260,978 (GRCm39) missense probably damaging 1.00
R7789:Gbf1 UTSW 19 46,242,441 (GRCm39) missense probably damaging 1.00
R7801:Gbf1 UTSW 19 46,261,082 (GRCm39) missense probably benign 0.03
R8241:Gbf1 UTSW 19 46,234,576 (GRCm39) missense probably damaging 1.00
R8716:Gbf1 UTSW 19 46,272,460 (GRCm39) missense probably damaging 1.00
R8851:Gbf1 UTSW 19 46,256,922 (GRCm39) missense probably damaging 1.00
R9424:Gbf1 UTSW 19 46,248,122 (GRCm39) missense probably benign 0.00
R9435:Gbf1 UTSW 19 46,268,432 (GRCm39) missense probably benign 0.42
R9500:Gbf1 UTSW 19 46,258,389 (GRCm39) missense probably benign 0.01
R9567:Gbf1 UTSW 19 46,260,046 (GRCm39) missense
R9576:Gbf1 UTSW 19 46,248,122 (GRCm39) missense probably benign 0.00
R9642:Gbf1 UTSW 19 46,258,707 (GRCm39) missense probably benign 0.00
R9680:Gbf1 UTSW 19 46,271,837 (GRCm39) missense probably damaging 0.96
R9760:Gbf1 UTSW 19 46,244,137 (GRCm39) missense probably benign 0.02
Z1177:Gbf1 UTSW 19 46,247,581 (GRCm39) missense probably damaging 0.98
Predicted Primers PCR Primer
(F):5'- TGTGTCCCCTCTAGCAATGTGACC -3'
(R):5'- AGGACAGTCTCAACTGGAGAAGCC -3'

Sequencing Primer
(F):5'- TGATCACAGAAAGCAAGTTCCTC -3'
(R):5'- CACTGAGGCAGCAGTCTG -3'
Posted On 2013-04-16