Mutagenetix > Incidental Mutation

Incidental Mutation 'R2874:Noc4l'

260451

Institutional Source

Beutler Lab

Gene Symbol

Noc4l

Ensembl Gene

ENSMUSG00000033294

Gene Name

NOC4 like

Synonyms

MMRRC Submission

040462-MU

Accession Numbers

Essential gene?

Probably essential (E-score: 0.959) question?

Stock #

R2874 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

110796285-110801248 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 110796969 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Valine to Alanine at position 465 (V465A)

Ref Sequence

ENSEMBL: ENSMUSP00000038263 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000031478] [ENSMUST00000042147]

AlphaFold

Q8BHY2

Predicted Effect

probably benign
Transcript: ENSMUST00000031478

SMART Domains

Protein: ENSMUSP00000031478
Gene: ENSMUSG00000029504

Domain	Start	End	E-Value	Type
low complexity region	50	75	N/A	INTRINSIC
DEXDc	189	442	4.04e-40	SMART
HELICc	491	573	2.86e-22	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000042147
AA Change: V465A

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)

SMART Domains

Protein: ENSMUSP00000038263
Gene: ENSMUSG00000033294
AA Change: V465A

Domain	Start	End	E-Value	Type
Pfam:CBF	305	453	2.7e-43	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000123380

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000124612

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000136629

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000145712

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000150100

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000199795

Meta Mutation Damage Score

0.0819

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.4%
20x: 95.3%

Validation Efficiency

100% (57/57)

Allele List at MGI

Other mutations in this stock

Total: 48 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
A930029G22Rik	T	A	17: 69,725,106 (GRCm39)		noncoding transcript	Het
Ankrd42	T	C	7: 92,254,566 (GRCm39)	K348E	possibly damaging	Het
Arhgef10	T	C	8: 15,025,093 (GRCm39)		probably null	Het
Arhgef10	A	G	8: 15,025,666 (GRCm39)	I459V	probably benign	Het
Cd6	A	G	19: 10,771,990 (GRCm39)	I307T	possibly damaging	Het
Cebpz	A	T	17: 79,239,532 (GRCm39)		probably benign	Het
Clcn4	A	G	7: 7,293,520 (GRCm39)	I412T	probably benign	Het
Clstn3	T	A	6: 124,415,294 (GRCm39)	D690V	probably damaging	Het
Col12a1	A	T	9: 79,606,831 (GRCm39)	F531I	probably damaging	Het
Dennd2b	A	T	7: 109,156,637 (GRCm39)	Y38N	probably benign	Het
Dhx57	A	T	17: 80,558,805 (GRCm39)	D1051E	probably benign	Het
Ext2	A	G	2: 93,570,031 (GRCm39)	V460A	possibly damaging	Het
Frmpd4	A	T	X: 166,260,243 (GRCm39)	D1166E	probably benign	Het
Fscb	T	C	12: 64,520,210 (GRCm39)	K419E	probably benign	Het
Ftdc1	A	T	16: 58,434,342 (GRCm39)	I125K	probably benign	Het
Ggct	G	T	6: 54,969,759 (GRCm39)	A21D	probably damaging	Het
Gm10717	A	G	9: 3,025,532 (GRCm39)	Y39C	probably benign	Het
Grid2ip	C	A	5: 143,343,684 (GRCm39)	Q127K	probably benign	Het
Ighv2-2	G	A	12: 113,552,118 (GRCm39)	T40I	possibly damaging	Het
Itpr2	T	C	6: 146,327,996 (GRCm39)	K79R	possibly damaging	Het
Klf8	A	T	X: 152,165,678 (GRCm39)	E82D	probably damaging	Het
Kpna7	T	C	5: 144,930,745 (GRCm39)	T367A	probably benign	Het
Lactbl1	G	A	4: 136,354,097 (GRCm39)	C37Y	probably damaging	Het
Lrp1b	A	G	2: 40,741,705 (GRCm39)	L3188P	probably damaging	Het
Matcap1	A	G	8: 106,008,664 (GRCm39)	M451T	possibly damaging	Het
Myo9b	G	A	8: 71,786,981 (GRCm39)	R721Q	probably benign	Het
Notch1	A	G	2: 26,350,247 (GRCm39)	C2298R	possibly damaging	Het
Or10z1	T	C	1: 174,078,092 (GRCm39)	S134G	probably benign	Het
Parp1	A	G	1: 180,401,230 (GRCm39)	D45G	probably damaging	Het
Plxna3	T	A	X: 73,383,002 (GRCm39)		probably benign	Het
Prdx4	A	G	X: 154,123,460 (GRCm39)	V15A	probably benign	Het
Prps1	C	T	X: 139,372,743 (GRCm39)		probably benign	Het
Psmb8	T	C	17: 34,419,144 (GRCm39)	I146T	probably damaging	Het
Qng1	T	A	13: 58,530,384 (GRCm39)	I209F	probably damaging	Het
Ralgds	A	G	2: 28,438,781 (GRCm39)		probably null	Het
Rasl12	A	G	9: 65,315,605 (GRCm39)	N83S	probably benign	Het
Rnf6	T	C	5: 146,147,215 (GRCm39)	Y601C	probably benign	Het
Rreb1	T	C	13: 38,100,484 (GRCm39)	I205T	probably benign	Het
Sgk2	A	G	2: 162,836,449 (GRCm39)		probably benign	Het
Spsb4	G	T	9: 96,878,071 (GRCm39)	T84K	probably damaging	Het
St7	C	T	6: 17,819,276 (GRCm39)	P60L	probably damaging	Het
Stx3	A	T	19: 11,766,938 (GRCm39)	V91D	probably damaging	Het
Tbc1d8	A	G	1: 39,444,398 (GRCm39)	F187S	probably damaging	Het
Tep1	A	G	14: 51,088,107 (GRCm39)	I85T	possibly damaging	Het
Trpa1	A	G	1: 14,957,844 (GRCm39)	C705R	probably damaging	Het
Vmn2r68	A	C	7: 84,882,834 (GRCm39)	M306R	probably benign	Het
Vwa7	G	A	17: 35,240,218 (GRCm39)	M395I	probably damaging	Het
Zfp53	A	T	17: 21,728,340 (GRCm39)	E124D	probably benign	Het

Other mutations in Noc4l

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01483:Noc4l	APN	5	110,796,824 (GRCm39)	missense	probably damaging	0.99
IGL02249:Noc4l	APN	5	110,801,081 (GRCm39)	unclassified	probably benign
wood	UTSW	5	110,796,758 (GRCm39)	missense	possibly damaging	0.94
PIT4280001:Noc4l	UTSW	5	110,799,305 (GRCm39)	missense	probably benign	0.38
R0326:Noc4l	UTSW	5	110,800,241 (GRCm39)	nonsense	probably null
R0544:Noc4l	UTSW	5	110,798,989 (GRCm39)	missense	possibly damaging	0.71
R1196:Noc4l	UTSW	5	110,798,450 (GRCm39)	missense	probably damaging	0.97
R1496:Noc4l	UTSW	5	110,797,944 (GRCm39)	missense	probably damaging	1.00
R1587:Noc4l	UTSW	5	110,800,889 (GRCm39)	missense	probably benign
R1699:Noc4l	UTSW	5	110,797,713 (GRCm39)	nonsense	probably null
R2113:Noc4l	UTSW	5	110,798,425 (GRCm39)	missense	possibly damaging	0.88
R4080:Noc4l	UTSW	5	110,797,738 (GRCm39)	missense	probably benign	0.01
R5097:Noc4l	UTSW	5	110,799,212 (GRCm39)	missense	probably benign
R5875:Noc4l	UTSW	5	110,799,176 (GRCm39)	critical splice donor site	probably null
R6903:Noc4l	UTSW	5	110,797,461 (GRCm39)	missense	probably damaging	1.00
R7328:Noc4l	UTSW	5	110,796,789 (GRCm39)	missense	possibly damaging	0.89
R7816:Noc4l	UTSW	5	110,797,539 (GRCm39)	missense	probably benign	0.44
R8379:Noc4l	UTSW	5	110,798,828 (GRCm39)	missense	probably damaging	1.00
R8770:Noc4l	UTSW	5	110,796,758 (GRCm39)	missense	possibly damaging	0.94

Predicted Primers

PCR Primer
(F):5'- CTTTAGCGGGGATGAACTCCAG -3'
(R):5'- TGACTGTCCAGATTCTCCACCG -3'

Sequencing Primer
(F):5'- GATGAACTCCAGGGGCAC -3'
(R):5'- AGATTCTCCACCGTCATCTACAG -3'

Posted On

2015-01-23