Incidental Mutation 'ANU18:Mindy1'
ID |
262527 |
Institutional Source |
Beutler Lab
|
Gene Symbol |
Mindy1
|
Ensembl Gene |
ENSMUSG00000038712 |
Gene Name |
MINDY lysine 48 deubiquitinase 1 |
Synonyms |
NF-E2 inducible protein, cI-40, Fam63a, 1810005H09Rik, 4930504E06Rik |
Accession Numbers |
|
Essential gene? |
Non essential
(E-score: 0.000)
|
Stock # |
ANU18
|
Quality Score |
225 |
Status
|
Not validated
|
Chromosome |
3 |
Chromosomal Location |
95189237-95203477 bp(+) (GRCm39) |
Type of Mutation |
missense |
DNA Base Change (assembly) |
T to C
at 95195701 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Leucine to Proline
at position 148
(L148P)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000127839
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000039537]
[ENSMUST00000107187]
[ENSMUST00000143498]
[ENSMUST00000168223]
|
AlphaFold |
Q76LS9 |
Predicted Effect |
probably damaging
Transcript: ENSMUST00000039537
AA Change: L148P
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
SMART Domains |
Protein: ENSMUSP00000043910 Gene: ENSMUSG00000038712 AA Change: L148P
Domain | Start | End | E-Value | Type |
low complexity region
|
35 |
54 |
N/A |
INTRINSIC |
low complexity region
|
67 |
86 |
N/A |
INTRINSIC |
Pfam:DUF544
|
143 |
268 |
7.7e-51 |
PFAM |
low complexity region
|
369 |
382 |
N/A |
INTRINSIC |
low complexity region
|
386 |
397 |
N/A |
INTRINSIC |
low complexity region
|
405 |
423 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably damaging
Transcript: ENSMUST00000107187
AA Change: L148P
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
SMART Domains |
Protein: ENSMUSP00000102805 Gene: ENSMUSG00000038712 AA Change: L148P
Domain | Start | End | E-Value | Type |
low complexity region
|
35 |
54 |
N/A |
INTRINSIC |
low complexity region
|
67 |
86 |
N/A |
INTRINSIC |
Pfam:DUF544
|
143 |
266 |
7e-42 |
PFAM |
low complexity region
|
369 |
382 |
N/A |
INTRINSIC |
low complexity region
|
400 |
406 |
N/A |
INTRINSIC |
low complexity region
|
414 |
432 |
N/A |
INTRINSIC |
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000133762
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000135249
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000135264
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000137743
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000143498
|
Predicted Effect |
probably damaging
Transcript: ENSMUST00000168223
AA Change: L148P
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
SMART Domains |
Protein: ENSMUSP00000127839 Gene: ENSMUSG00000038712 AA Change: L148P
Domain | Start | End | E-Value | Type |
low complexity region
|
35 |
54 |
N/A |
INTRINSIC |
low complexity region
|
67 |
86 |
N/A |
INTRINSIC |
Pfam:DUF544
|
143 |
268 |
7.7e-51 |
PFAM |
low complexity region
|
369 |
382 |
N/A |
INTRINSIC |
low complexity region
|
386 |
397 |
N/A |
INTRINSIC |
low complexity region
|
405 |
423 |
N/A |
INTRINSIC |
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000149568
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000152640
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000153928
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000147963
|
Coding Region Coverage |
- 1x: 99.1%
- 3x: 98.5%
- 10x: 96.8%
- 20x: 94.4%
|
Validation Efficiency |
|
Allele List at MGI |
|
Other mutations in this stock |
Total: 40 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
1600012H06Rik |
C |
T |
17: 15,164,181 (GRCm39) |
|
probably null |
Het |
Acacb |
A |
T |
5: 114,384,559 (GRCm39) |
I2238L |
probably benign |
Het |
Aldh1l2 |
T |
C |
10: 83,358,710 (GRCm39) |
Y95C |
probably damaging |
Het |
Asxl2 |
A |
G |
12: 3,551,425 (GRCm39) |
T1056A |
probably damaging |
Het |
B4galnt1 |
A |
G |
10: 127,005,648 (GRCm39) |
T250A |
possibly damaging |
Het |
Cela3b |
A |
T |
4: 137,151,154 (GRCm39) |
|
probably null |
Het |
Chst3 |
T |
C |
10: 60,021,654 (GRCm39) |
T398A |
probably damaging |
Het |
Cngb3 |
A |
G |
4: 19,425,625 (GRCm39) |
T478A |
probably damaging |
Het |
Cyp4a10 |
T |
C |
4: 115,375,652 (GRCm39) |
L45P |
probably damaging |
Het |
D630003M21Rik |
A |
G |
2: 158,059,568 (GRCm39) |
S111P |
probably benign |
Het |
Defb21 |
A |
G |
2: 152,416,671 (GRCm39) |
E49G |
possibly damaging |
Het |
Dnajc1 |
T |
C |
2: 18,313,645 (GRCm39) |
T159A |
probably damaging |
Het |
Dnmbp |
A |
G |
19: 43,890,793 (GRCm39) |
S325P |
probably benign |
Het |
Fam91a1 |
T |
C |
15: 58,314,720 (GRCm39) |
F534L |
probably damaging |
Het |
Fermt2 |
T |
C |
14: 45,702,320 (GRCm39) |
E488G |
probably damaging |
Het |
Filip1 |
T |
C |
9: 79,726,462 (GRCm39) |
D719G |
possibly damaging |
Het |
Gad1-ps |
A |
G |
10: 99,281,013 (GRCm39) |
|
noncoding transcript |
Het |
Glra3 |
C |
A |
8: 56,393,997 (GRCm39) |
A36E |
probably benign |
Het |
Hnrnpm |
C |
T |
17: 33,888,142 (GRCm39) |
|
probably null |
Het |
Lct |
T |
A |
1: 128,235,784 (GRCm39) |
R408* |
probably null |
Het |
Lrrk2 |
T |
A |
15: 91,651,542 (GRCm39) |
Y1733N |
probably damaging |
Het |
Mkrn2 |
C |
A |
6: 115,588,750 (GRCm39) |
Y164* |
probably null |
Het |
Msra |
T |
C |
14: 64,447,884 (GRCm39) |
Y135C |
probably damaging |
Het |
Ndst3 |
C |
T |
3: 123,342,565 (GRCm39) |
A749T |
probably damaging |
Het |
Ngdn |
G |
T |
14: 55,254,571 (GRCm39) |
A41S |
probably benign |
Het |
Nlrp12 |
A |
T |
7: 3,288,722 (GRCm39) |
S597T |
probably damaging |
Het |
Or5b99 |
A |
T |
19: 12,976,781 (GRCm39) |
I144F |
probably damaging |
Het |
Pabpc6 |
A |
G |
17: 9,886,899 (GRCm39) |
S551P |
probably benign |
Het |
Plekhg5 |
C |
T |
4: 152,197,010 (GRCm39) |
A752V |
probably benign |
Het |
Prpf4b |
T |
C |
13: 35,068,274 (GRCm39) |
S368P |
probably benign |
Het |
Pus7 |
A |
G |
5: 23,951,422 (GRCm39) |
|
probably null |
Het |
Rab40b |
C |
G |
11: 121,248,788 (GRCm39) |
V156L |
probably benign |
Het |
Slc9a9 |
T |
A |
9: 94,937,512 (GRCm39) |
S455T |
probably benign |
Het |
Tmem26 |
A |
T |
10: 68,614,436 (GRCm39) |
N284Y |
probably damaging |
Het |
Tmem87a |
T |
C |
2: 120,211,250 (GRCm39) |
I232V |
probably benign |
Het |
Trpm2 |
A |
G |
10: 77,759,818 (GRCm39) |
L1106P |
probably damaging |
Het |
Tshz1 |
A |
G |
18: 84,032,786 (GRCm39) |
Y541H |
probably damaging |
Het |
Zfp213 |
G |
T |
17: 23,780,391 (GRCm39) |
A43D |
probably benign |
Het |
Zfp365 |
A |
G |
10: 67,745,184 (GRCm39) |
V198A |
probably damaging |
Het |
Zfp618 |
G |
A |
4: 63,051,063 (GRCm39) |
V615M |
probably damaging |
Het |
|
Other mutations in Mindy1 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL01301:Mindy1
|
APN |
3 |
95,195,701 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL03380:Mindy1
|
APN |
3 |
95,198,329 (GRCm39) |
splice site |
probably benign |
|
PIT4576001:Mindy1
|
UTSW |
3 |
95,195,380 (GRCm39) |
missense |
probably benign |
0.12 |
R4647:Mindy1
|
UTSW |
3 |
95,190,054 (GRCm39) |
unclassified |
probably benign |
|
R5076:Mindy1
|
UTSW |
3 |
95,202,710 (GRCm39) |
missense |
probably benign |
0.01 |
R5875:Mindy1
|
UTSW |
3 |
95,202,125 (GRCm39) |
missense |
probably damaging |
0.98 |
R5938:Mindy1
|
UTSW |
3 |
95,201,067 (GRCm39) |
missense |
probably benign |
0.18 |
R8112:Mindy1
|
UTSW |
3 |
95,202,122 (GRCm39) |
missense |
probably damaging |
1.00 |
R8318:Mindy1
|
UTSW |
3 |
95,199,936 (GRCm39) |
missense |
probably damaging |
0.98 |
R8692:Mindy1
|
UTSW |
3 |
95,199,587 (GRCm39) |
missense |
probably damaging |
1.00 |
R9356:Mindy1
|
UTSW |
3 |
95,202,590 (GRCm39) |
missense |
probably benign |
0.20 |
R9357:Mindy1
|
UTSW |
3 |
95,202,590 (GRCm39) |
missense |
probably benign |
0.20 |
R9358:Mindy1
|
UTSW |
3 |
95,202,590 (GRCm39) |
missense |
probably benign |
0.20 |
R9683:Mindy1
|
UTSW |
3 |
95,202,176 (GRCm39) |
missense |
probably benign |
0.21 |
X0028:Mindy1
|
UTSW |
3 |
95,202,206 (GRCm39) |
missense |
probably damaging |
1.00 |
|
Predicted Primers |
|
Posted On |
2015-02-04 |