Incidental Mutation 'ANU74:Rrn3'
ID 262725
Institutional Source Beutler Lab
Gene Symbol Rrn3
Ensembl Gene ENSMUSG00000022682
Gene Name RRN3 RNA polymerase I transcription factor homolog (yeast)
Synonyms TIF-1A, E130302O19Rik
Accession Numbers
Essential gene? Essential (E-score: 1.000) question?
Stock # ANU74
Quality Score 225
Status Not validated
Chromosome 16
Chromosomal Location 13598572-13632703 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) T to C at 13629397 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Phenylalanine to Serine at position 571 (F571S)
Ref Sequence ENSEMBL: ENSMUSP00000023363 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000023363]
AlphaFold B2RS91
Predicted Effect possibly damaging
Transcript: ENSMUST00000023363
AA Change: F571S

PolyPhen 2 Score 0.655 (Sensitivity: 0.87; Specificity: 0.91)
SMART Domains Protein: ENSMUSP00000023363
Gene: ENSMUSG00000022682
AA Change: F571S

DomainStartEndE-ValueType
low complexity region 15 27 N/A INTRINSIC
Pfam:RRN3 46 584 7.5e-138 PFAM
low complexity region 597 605 N/A INTRINSIC
low complexity region 631 641 N/A INTRINSIC
Coding Region Coverage
  • 1x: 99.3%
  • 3x: 98.7%
  • 10x: 97.2%
  • 20x: 95.3%
Validation Efficiency
MGI Phenotype PHENOTYPE: Homozygous null mice display embryonic lethality during organogenesis, failure to undergo embryonic turning, delayed embryonic development, markedly reduced embryo size, and increased apoptosis. [provided by MGI curators]
Allele List at MGI

All alleles(38) : Targeted, knock-out(1) Targeted, other(1) Gene trapped(36)

Other mutations in this stock
Total: 49 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Adgra3 G A 5: 50,118,380 (GRCm39) S1056L probably benign Het
Ankrd26 A T 6: 118,529,736 (GRCm39) D236E probably benign Het
Capn15 C T 17: 26,184,460 (GRCm39) W7* probably null Het
Celsr2 G A 3: 108,319,815 (GRCm39) T999M probably damaging Het
Chrd T A 16: 20,560,069 (GRCm39) M912K possibly damaging Het
Col9a1 A G 1: 24,224,409 (GRCm39) D197G unknown Het
Csf1r A G 18: 61,250,463 (GRCm39) E431G probably benign Het
Eloc A G 1: 16,713,574 (GRCm39) F115L possibly damaging Het
Fap T C 2: 62,378,113 (GRCm39) D193G probably damaging Het
Fscn2 T C 11: 120,253,162 (GRCm39) Y210H probably damaging Het
Fut9 G C 4: 25,620,802 (GRCm39) T4R probably benign Het
Grb2 A T 11: 115,536,733 (GRCm39) D131E probably benign Het
Hecw2 T C 1: 53,964,853 (GRCm39) T658A probably benign Het
Helz2 T C 2: 180,876,627 (GRCm39) E1289G probably benign Het
Hyou1 A G 9: 44,292,560 (GRCm39) N92D possibly damaging Het
Irf8 A C 8: 121,466,608 (GRCm39) I18L possibly damaging Het
Kif12 GGGGC GGGGCCTCCACCCGGCGGGC 4: 63,089,660 (GRCm39) probably benign Het
Kif12 GC "GCCTCCACCCGGCGGTC,GCC" 4: 63,089,663 (GRCm39) probably null Het
Lamc2 A C 1: 153,007,581 (GRCm39) D864E probably benign Het
Map3k4 A G 17: 12,451,863 (GRCm39) V1475A probably damaging Het
Mapk8ip3 A C 17: 25,119,551 (GRCm39) M1030R possibly damaging Het
Mat1a A G 14: 40,833,099 (GRCm39) D94G probably benign Het
Myh15 T A 16: 48,993,295 (GRCm39) D1643E possibly damaging Het
Myo15b T C 11: 115,769,239 (GRCm39) F55L probably damaging Het
Nhlh2 A T 3: 101,919,970 (GRCm39) M1L probably benign Het
Nup214 T C 2: 31,924,978 (GRCm39) S1836P probably damaging Het
Olr1 G A 6: 129,477,032 (GRCm39) R78C possibly damaging Het
Or5m9 T A 2: 85,877,655 (GRCm39) Y276* probably null Het
Pam16 C A 16: 4,434,497 (GRCm39) V98F probably damaging Het
Pelp1 C T 11: 70,285,913 (GRCm39) V652I probably damaging Het
Pole A G 5: 110,437,236 (GRCm39) H67R probably benign Het
Rbms1 G T 2: 60,628,060 (GRCm39) A60E probably damaging Het
Recql4 A T 15: 76,589,957 (GRCm39) M789K possibly damaging Het
Ryr3 T C 2: 112,661,575 (GRCm39) probably null Het
Sec61b C A 4: 47,474,922 (GRCm39) N26K possibly damaging Het
Serinc1 T C 10: 57,395,938 (GRCm39) E284G probably benign Het
Slc30a9 G A 5: 67,507,195 (GRCm39) D496N probably damaging Het
Slc44a4 G A 17: 35,140,554 (GRCm39) R249H probably damaging Het
Slc6a13 A C 6: 121,311,835 (GRCm39) D404A probably benign Het
Spata18 A G 5: 73,828,456 (GRCm39) E225G probably damaging Het
Sspo G A 6: 48,437,893 (GRCm39) G1351S probably damaging Het
Tgm3 T C 2: 129,890,310 (GRCm39) V691A probably damaging Het
Tns3 C T 11: 8,442,149 (GRCm39) R738Q probably benign Het
Tyk2 A T 9: 21,027,454 (GRCm39) I506N probably damaging Het
Ube2v1 G A 2: 167,452,264 (GRCm39) T113I probably damaging Het
Vmn1r177 A G 7: 23,565,645 (GRCm39) V77A possibly damaging Het
Vmn2r14 A T 5: 109,366,910 (GRCm39) S437T probably benign Het
Vmn2r78 G C 7: 86,570,273 (GRCm39) V264L possibly damaging Het
Zfp956 T G 6: 47,940,507 (GRCm39) Y289D probably benign Het
Other mutations in Rrn3
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01085:Rrn3 APN 16 13,626,926 (GRCm39) missense probably damaging 1.00
IGL02507:Rrn3 APN 16 13,606,721 (GRCm39) missense probably benign
IGL02607:Rrn3 APN 16 13,624,427 (GRCm39) missense possibly damaging 0.65
IGL02648:Rrn3 APN 16 13,629,453 (GRCm39) missense probably benign
IGL03217:Rrn3 APN 16 13,626,875 (GRCm39) missense possibly damaging 0.83
IGL03403:Rrn3 APN 16 13,617,809 (GRCm39) nonsense probably null
11287:Rrn3 UTSW 16 13,617,883 (GRCm39) splice site probably null
R0013:Rrn3 UTSW 16 13,630,977 (GRCm39) missense possibly damaging 0.92
R0013:Rrn3 UTSW 16 13,630,977 (GRCm39) missense possibly damaging 0.92
R0308:Rrn3 UTSW 16 13,617,746 (GRCm39) splice site probably benign
R1970:Rrn3 UTSW 16 13,606,938 (GRCm39) missense probably damaging 1.00
R3712:Rrn3 UTSW 16 13,601,959 (GRCm39) nonsense probably null
R3959:Rrn3 UTSW 16 13,599,964 (GRCm39) critical splice donor site probably null
R4343:Rrn3 UTSW 16 13,601,986 (GRCm39) missense probably benign 0.01
R4678:Rrn3 UTSW 16 13,613,940 (GRCm39) missense probably damaging 1.00
R4920:Rrn3 UTSW 16 13,608,503 (GRCm39) missense probably benign 0.01
R4925:Rrn3 UTSW 16 13,617,836 (GRCm39) missense probably damaging 1.00
R5225:Rrn3 UTSW 16 13,610,798 (GRCm39) splice site probably null
R5469:Rrn3 UTSW 16 13,630,964 (GRCm39) missense probably benign 0.01
R5702:Rrn3 UTSW 16 13,631,130 (GRCm39) nonsense probably null
R6059:Rrn3 UTSW 16 13,624,468 (GRCm39) missense probably benign
R6425:Rrn3 UTSW 16 13,629,465 (GRCm39) missense probably benign 0.00
R7582:Rrn3 UTSW 16 13,628,375 (GRCm39) nonsense probably null
R7814:Rrn3 UTSW 16 13,629,453 (GRCm39) missense probably benign
R8332:Rrn3 UTSW 16 13,616,484 (GRCm39) missense possibly damaging 0.61
R9315:Rrn3 UTSW 16 13,606,690 (GRCm39) missense probably benign 0.00
R9752:Rrn3 UTSW 16 13,631,095 (GRCm39) missense probably benign
R9757:Rrn3 UTSW 16 13,628,433 (GRCm39) missense probably damaging 0.96
Z1176:Rrn3 UTSW 16 13,631,020 (GRCm39) missense probably damaging 1.00
Z1177:Rrn3 UTSW 16 13,606,710 (GRCm39) missense possibly damaging 0.93
Predicted Primers PCR Primer
(F):5'- GTTGCCTGGTCCCTAAGTCTTGAC -3'
(R):5'- ACTGTGACCTGTATGCCCACTGTG -3'

Sequencing Primer
(F):5'- AGTGGGTCAGAAACAGTTTCTC -3'
(R):5'- TGGCCCATGACTACAGGAG -3'
Posted On 2015-02-04