Incidental Mutation 'R3106:Hnf4g'
ID 263038
Institutional Source Beutler Lab
Gene Symbol Hnf4g
Ensembl Gene ENSMUSG00000017688
Gene Name hepatocyte nuclear factor 4, gamma
Synonyms NR2A2
MMRRC Submission 040580-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.200) question?
Stock # R3106 (G1)
Quality Score 225
Status Validated
Chromosome 3
Chromosomal Location 3573090-3724863 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) T to G at 3717916 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Serine to Arginine at position 388 (S388R)
Ref Sequence ENSEMBL: ENSMUSP00000104031 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000108393] [ENSMUST00000108394]
AlphaFold no structure available at present
Predicted Effect probably benign
Transcript: ENSMUST00000108393
AA Change: S344R

PolyPhen 2 Score 0.168 (Sensitivity: 0.92; Specificity: 0.87)
SMART Domains Protein: ENSMUSP00000104030
Gene: ENSMUSG00000017688
AA Change: S344R

DomainStartEndE-ValueType
ZnF_C4 9 80 6.51e-35 SMART
low complexity region 118 125 N/A INTRINSIC
HOLI 141 299 7.29e-47 SMART
low complexity region 334 345 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000108394
AA Change: S388R

PolyPhen 2 Score 0.423 (Sensitivity: 0.89; Specificity: 0.90)
SMART Domains Protein: ENSMUSP00000104031
Gene: ENSMUSG00000017688
AA Change: S388R

DomainStartEndE-ValueType
ZnF_C4 63 134 6.51e-35 SMART
low complexity region 172 179 N/A INTRINSIC
HOLI 195 353 7.29e-47 SMART
low complexity region 388 399 N/A INTRINSIC
Meta Mutation Damage Score 0.0621 question?
Coding Region Coverage
  • 1x: 99.2%
  • 3x: 98.6%
  • 10x: 97.4%
  • 20x: 95.7%
Validation Efficiency 100% (53/53)
MGI Phenotype PHENOTYPE: Mice homozygous for a knock-out allele are less inclined to build nests, spend more time in a passive state during the forced swim test, and display a reduction in energy expenditure and night time activity that results in increased body weight despite adecreased intake of food and water. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 53 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abca15 A T 7: 119,995,856 (GRCm39) E1331V possibly damaging Het
Adam22 A G 5: 8,167,583 (GRCm39) probably null Het
Adamts17 T A 7: 66,774,820 (GRCm39) S980T probably damaging Het
Adarb1 C A 10: 77,157,591 (GRCm39) K285N probably damaging Het
Atp5f1c A G 2: 10,068,276 (GRCm39) S160P probably benign Het
Baz2a AGCGGCGGTACTTGCGGG AG 10: 127,960,946 (GRCm39) probably null Het
Btf3 T G 13: 98,447,496 (GRCm39) E145D probably benign Het
Ccdc184 G T 15: 98,066,482 (GRCm39) A96S probably damaging Het
Ccdc191 T C 16: 43,751,573 (GRCm39) F301S probably damaging Het
Ceacam5 T C 7: 17,481,248 (GRCm39) Y332H probably benign Het
Clip2 T C 5: 134,551,918 (GRCm39) K68R probably benign Het
Cntln C T 4: 84,875,406 (GRCm39) T280M possibly damaging Het
Col6a3 T C 1: 90,744,024 (GRCm39) R515G probably damaging Het
Ctnnal1 G A 4: 56,813,246 (GRCm39) L662F probably benign Het
Dennd3 C A 15: 73,436,973 (GRCm39) S118* probably null Het
Dgkg T A 16: 22,394,091 (GRCm39) T321S probably damaging Het
Dzip1l A T 9: 99,524,625 (GRCm39) K249* probably null Het
Dzip1l A G 9: 99,529,174 (GRCm39) E301G probably benign Het
Emc10 G A 7: 44,142,616 (GRCm39) R109W probably damaging Het
Ezh1 A C 11: 101,086,468 (GRCm39) C575W probably damaging Het
Fam187b A G 7: 30,676,665 (GRCm39) D58G probably benign Het
Galnt4 T C 10: 98,945,243 (GRCm39) Y323H probably benign Het
Grm1 A G 10: 10,955,601 (GRCm39) S228P probably benign Het
H1f2 G T 13: 23,922,883 (GRCm39) A18S unknown Het
Il1rap A G 16: 26,541,502 (GRCm39) E581G probably benign Het
Lemd2 C A 17: 27,420,644 (GRCm39) L256F probably damaging Het
Mnd1 C A 3: 84,041,416 (GRCm39) C62F probably benign Het
Nphs1 C A 7: 30,166,965 (GRCm39) S724* probably null Het
Or4g17 A G 2: 111,209,840 (GRCm39) N165S probably benign Het
Or5w13 T C 2: 87,523,849 (GRCm39) I126V probably damaging Het
Osgep T C 14: 51,154,286 (GRCm39) T225A probably benign Het
Pan3 T C 5: 147,476,189 (GRCm39) probably benign Het
Pld3 A G 7: 27,235,212 (GRCm39) probably null Het
Plekha7 C T 7: 115,763,639 (GRCm39) R321K probably benign Het
Plekhg5 C T 4: 152,196,635 (GRCm39) T694M probably damaging Het
Pramel31 T C 4: 144,088,246 (GRCm39) V14A probably benign Het
Ptpn20 A G 14: 33,334,253 (GRCm39) I44V probably benign Het
Ptprj T A 2: 90,270,975 (GRCm39) H1251L probably damaging Het
Sbspon T C 1: 15,962,806 (GRCm39) E24G probably benign Het
Sfmbt1 G A 14: 30,539,753 (GRCm39) C847Y probably damaging Het
Sparcl1 T C 5: 104,241,203 (GRCm39) T74A probably benign Het
Sppl2b A G 10: 80,703,325 (GRCm39) E529G probably benign Het
Stradb C A 1: 59,031,450 (GRCm39) H212Q possibly damaging Het
Tkfc G T 19: 10,574,357 (GRCm39) C198* probably null Het
Tm4sf4 C T 3: 57,345,043 (GRCm39) R150C possibly damaging Het
Tmem212 T C 3: 27,939,019 (GRCm39) S156G probably damaging Het
Tmem51 T C 4: 141,765,035 (GRCm39) N8D probably damaging Het
Tmigd1 A G 11: 76,801,124 (GRCm39) T204A possibly damaging Het
Trp53bp1 A G 2: 121,067,133 (GRCm39) L531S probably damaging Het
Tsga10 G A 1: 37,840,872 (GRCm39) L445F probably damaging Het
Urb1 C T 16: 90,592,331 (GRCm39) V310I probably damaging Het
Vmn2r129 T A 4: 156,685,730 (GRCm39) noncoding transcript Het
Wdr19 T C 5: 65,359,966 (GRCm39) S24P probably benign Het
Other mutations in Hnf4g
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00089:Hnf4g APN 3 3,713,142 (GRCm39) missense probably benign
IGL00832:Hnf4g APN 3 3,706,336 (GRCm39) missense probably damaging 1.00
IGL01571:Hnf4g APN 3 3,716,326 (GRCm39) splice site probably benign
IGL01896:Hnf4g APN 3 3,716,470 (GRCm39) missense probably damaging 1.00
IGL02068:Hnf4g APN 3 3,709,636 (GRCm39) missense probably benign
IGL03040:Hnf4g APN 3 3,699,271 (GRCm39) utr 5 prime probably benign
IGL03097:Hnf4g UTSW 3 3,716,674 (GRCm39) missense probably damaging 1.00
R0124:Hnf4g UTSW 3 3,708,142 (GRCm39) splice site probably benign
R0477:Hnf4g UTSW 3 3,716,851 (GRCm39) splice site probably benign
R0512:Hnf4g UTSW 3 3,716,682 (GRCm39) missense probably damaging 1.00
R0744:Hnf4g UTSW 3 3,716,689 (GRCm39) missense possibly damaging 0.92
R1323:Hnf4g UTSW 3 3,699,281 (GRCm39) missense possibly damaging 0.73
R1323:Hnf4g UTSW 3 3,699,281 (GRCm39) missense possibly damaging 0.73
R1656:Hnf4g UTSW 3 3,718,011 (GRCm39) missense probably benign
R1982:Hnf4g UTSW 3 3,703,268 (GRCm39) missense probably damaging 0.99
R2336:Hnf4g UTSW 3 3,706,284 (GRCm39) missense probably benign 0.25
R3104:Hnf4g UTSW 3 3,717,916 (GRCm39) missense probably benign 0.42
R3105:Hnf4g UTSW 3 3,717,916 (GRCm39) missense probably benign 0.42
R3843:Hnf4g UTSW 3 3,716,362 (GRCm39) missense probably benign 0.09
R4200:Hnf4g UTSW 3 3,716,344 (GRCm39) missense possibly damaging 0.94
R4248:Hnf4g UTSW 3 3,717,909 (GRCm39) missense possibly damaging 0.69
R4418:Hnf4g UTSW 3 3,713,154 (GRCm39) missense possibly damaging 0.66
R4756:Hnf4g UTSW 3 3,708,069 (GRCm39) missense possibly damaging 0.69
R4871:Hnf4g UTSW 3 3,716,448 (GRCm39) missense possibly damaging 0.94
R5022:Hnf4g UTSW 3 3,709,647 (GRCm39) missense probably damaging 0.99
R5023:Hnf4g UTSW 3 3,709,647 (GRCm39) missense probably damaging 0.99
R5088:Hnf4g UTSW 3 3,722,181 (GRCm39) missense probably benign 0.09
R5604:Hnf4g UTSW 3 3,722,186 (GRCm39) nonsense probably null
R6746:Hnf4g UTSW 3 3,722,170 (GRCm39) nonsense probably null
R7088:Hnf4g UTSW 3 3,713,185 (GRCm39) splice site probably null
R7335:Hnf4g UTSW 3 3,717,924 (GRCm39) missense possibly damaging 0.93
R8153:Hnf4g UTSW 3 3,699,250 (GRCm39) start gained probably benign
R8182:Hnf4g UTSW 3 3,716,679 (GRCm39) missense possibly damaging 0.82
R8676:Hnf4g UTSW 3 3,708,133 (GRCm39) splice site probably benign
R9008:Hnf4g UTSW 3 3,708,096 (GRCm39) missense probably benign
R9153:Hnf4g UTSW 3 3,573,378 (GRCm39) start gained probably benign
R9671:Hnf4g UTSW 3 3,703,273 (GRCm39) missense probably benign 0.00
R9802:Hnf4g UTSW 3 3,699,404 (GRCm39) missense probably benign 0.00
Predicted Primers PCR Primer
(F):5'- CTTTAACATGAAAGTAGTTCTCCCC -3'
(R):5'- CTATCTAATGTTTGCAGTTCCTGGG -3'

Sequencing Primer
(F):5'- CATGAAAGTAGTTCTCCCCATTTG -3'
(R):5'- TCTGGTCTGTATGAACCAG -3'
Posted On 2015-02-05