Incidental Mutation 'R3106:Tmigd1'
ID263071
Institutional Source Beutler Lab
Gene Symbol Tmigd1
Ensembl Gene ENSMUSG00000020839
Gene Nametransmembrane and immunoglobulin domain containing 1
Synonyms
MMRRC Submission 040580-MU
Accession Numbers
Is this an essential gene? Non essential (E-score: 0.000) question?
Stock #R3106 (G1)
Quality Score225
Status Validated
Chromosome11
Chromosomal Location76902159-76916587 bp(+) (GRCm38)
Type of Mutationmissense
DNA Base Change (assembly) A to G at 76910298 bp
ZygosityHeterozygous
Amino Acid Change Threonine to Alanine at position 204 (T204A)
Ref Sequence ENSEMBL: ENSMUSP00000099553 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000072633] [ENSMUST00000102495] [ENSMUST00000142166]
Predicted Effect possibly damaging
Transcript: ENSMUST00000072633
AA Change: T204A

PolyPhen 2 Score 0.928 (Sensitivity: 0.81; Specificity: 0.94)
SMART Domains Protein: ENSMUSP00000072427
Gene: ENSMUSG00000020839
AA Change: T204A

DomainStartEndE-ValueType
IG_like 38 119 6.75e1 SMART
IGc2 133 201 4.63e-8 SMART
transmembrane domain 217 239 N/A INTRINSIC
Predicted Effect possibly damaging
Transcript: ENSMUST00000102495
AA Change: T204A

PolyPhen 2 Score 0.928 (Sensitivity: 0.81; Specificity: 0.94)
SMART Domains Protein: ENSMUSP00000099553
Gene: ENSMUSG00000020839
AA Change: T204A

DomainStartEndE-ValueType
signal peptide 1 26 N/A INTRINSIC
IG_like 38 119 6.75e1 SMART
IGc2 133 201 4.63e-8 SMART
transmembrane domain 217 239 N/A INTRINSIC
Predicted Effect noncoding transcript
Transcript: ENSMUST00000136899
Predicted Effect probably benign
Transcript: ENSMUST00000142166
SMART Domains Protein: ENSMUSP00000121222
Gene: ENSMUSG00000020839

DomainStartEndE-ValueType
signal peptide 1 26 N/A INTRINSIC
Pfam:Ig_2 27 120 3.8e-6 PFAM
Meta Mutation Damage Score 0.0368 question?
Coding Region Coverage
  • 1x: 99.2%
  • 3x: 98.6%
  • 10x: 97.4%
  • 20x: 95.7%
Validation Efficiency 100% (53/53)
Allele List at MGI
Other mutations in this stock
Total: 53 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abca15 A T 7: 120,396,633 E1331V possibly damaging Het
Adam22 A G 5: 8,117,583 probably null Het
Adamts17 T A 7: 67,125,072 S980T probably damaging Het
Adarb1 C A 10: 77,321,757 K285N probably damaging Het
Atp5c1 A G 2: 10,063,465 S160P probably benign Het
Baz2a AGCGGCGGTACTTGCGGG AG 10: 128,125,077 probably null Het
Btf3 T G 13: 98,310,988 E145D probably benign Het
Ccdc184 G T 15: 98,168,601 A96S probably damaging Het
Ccdc191 T C 16: 43,931,210 F301S probably damaging Het
Ceacam5 T C 7: 17,747,323 Y332H probably benign Het
Clip2 T C 5: 134,523,064 K68R probably benign Het
Cntln C T 4: 84,957,169 T280M possibly damaging Het
Col6a3 T C 1: 90,816,302 R515G probably damaging Het
Ctnnal1 G A 4: 56,813,246 L662F probably benign Het
Dennd3 C A 15: 73,565,124 S118* probably null Het
Dgkg T A 16: 22,575,341 T321S probably damaging Het
Dzip1l A T 9: 99,642,572 K249* probably null Het
Dzip1l A G 9: 99,647,121 E301G probably benign Het
Emc10 G A 7: 44,493,192 R109W probably damaging Het
Ezh1 A C 11: 101,195,642 C575W probably damaging Het
Fam187b A G 7: 30,977,240 D58G probably benign Het
Galnt4 T C 10: 99,109,381 Y323H probably benign Het
Gm13119 T C 4: 144,361,676 V14A probably benign Het
Grm1 A G 10: 11,079,857 S228P probably benign Het
Hist1h1c G T 13: 23,738,900 A18S unknown Het
Hnf4g T G 3: 3,652,856 S388R probably benign Het
Il1rap A G 16: 26,722,752 E581G probably benign Het
Lemd2 C A 17: 27,201,670 L256F probably damaging Het
Mnd1 C A 3: 84,134,109 C62F probably benign Het
Nphs1 C A 7: 30,467,540 S724* probably null Het
Olfr1136 T C 2: 87,693,505 I126V probably damaging Het
Olfr1284 A G 2: 111,379,495 N165S probably benign Het
Osgep T C 14: 50,916,829 T225A probably benign Het
Pan3 T C 5: 147,539,379 probably benign Het
Pld3 A G 7: 27,535,787 probably null Het
Plekha7 C T 7: 116,164,404 R321K probably benign Het
Plekhg5 C T 4: 152,112,178 T694M probably damaging Het
Ptpn20 A G 14: 33,612,296 I44V probably benign Het
Ptprj T A 2: 90,440,631 H1251L probably damaging Het
Sbspon T C 1: 15,892,582 E24G probably benign Het
Sfmbt1 G A 14: 30,817,796 C847Y probably damaging Het
Sparcl1 T C 5: 104,093,337 T74A probably benign Het
Sppl2b A G 10: 80,867,491 E529G probably benign Het
Stradb C A 1: 58,992,291 H212Q possibly damaging Het
Tkfc G T 19: 10,596,993 C198* probably null Het
Tm4sf4 C T 3: 57,437,622 R150C possibly damaging Het
Tmem212 T C 3: 27,884,870 S156G probably damaging Het
Tmem51 T C 4: 142,037,724 N8D probably damaging Het
Trp53bp1 A G 2: 121,236,652 L531S probably damaging Het
Tsga10 G A 1: 37,801,791 L445F probably damaging Het
Urb1 C T 16: 90,795,443 V310I probably damaging Het
Vmn2r-ps159 T A 4: 156,333,435 noncoding transcript Het
Wdr19 T C 5: 65,202,623 S24P probably benign Het
Other mutations in Tmigd1
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL02887:Tmigd1 APN 11 76913986 missense probably benign 0.00
IGL03177:Tmigd1 APN 11 76906948 missense probably benign 0.06
R0305:Tmigd1 UTSW 11 76907134 missense probably damaging 1.00
R1440:Tmigd1 UTSW 11 76910160 missense probably damaging 1.00
R1942:Tmigd1 UTSW 11 76914079 critical splice donor site probably null
R2155:Tmigd1 UTSW 11 76910173 missense probably benign 0.14
R3104:Tmigd1 UTSW 11 76910298 missense possibly damaging 0.93
R3105:Tmigd1 UTSW 11 76910298 missense possibly damaging 0.93
R5712:Tmigd1 UTSW 11 76907032 missense probably damaging 1.00
R5741:Tmigd1 UTSW 11 76907090 missense possibly damaging 0.94
R5837:Tmigd1 UTSW 11 76916085 utr 3 prime probably benign
Predicted Primers PCR Primer
(F):5'- CAATGGCTTCCAAACCGTG -3'
(R):5'- CTAAAGGAAATGTTCTTAGATGGGG -3'

Sequencing Primer
(F):5'- TGGTTTGCAACGTGAAATCCAACC -3'
(R):5'- AATGTTCTTAGATGGGGATAATTTCC -3'
Posted On2015-02-05