Mutagenetix > Incidental Mutation

Incidental Mutation 'R2967:Cntn6'

263285

Institutional Source

Beutler Lab

Gene Symbol

Cntn6

Ensembl Gene

ENSMUSG00000030092

Gene Name

contactin 6

Synonyms

NB-3

MMRRC Submission

040523-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.141) question?

Stock #

R2967 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

104469751-104840367 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

G to A at 104703198 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Valine to Isoleucine at position 135 (V135I)

Ref Sequence

ENSEMBL: ENSMUSP00000124714 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000089215] [ENSMUST00000161070] [ENSMUST00000162872]

AlphaFold

Q9JMB8

Predicted Effect

probably benign
Transcript: ENSMUST00000089215
AA Change: V207I

PolyPhen 2 Score 0.008 (Sensitivity: 0.96; Specificity: 0.76)

SMART Domains

Protein: ENSMUSP00000086623
Gene: ENSMUSG00000030092
AA Change: V207I

Domain	Start	End	E-Value	Type
signal peptide	1	19	N/A	INTRINSIC
IGc2	41	107	5.24e-7	SMART
IG	129	217	2.28e-7	SMART
IGc2	240	304	4e-12	SMART
IGc2	330	393	4.52e-11	SMART
IGc2	422	486	5.48e-10	SMART
IGc2	512	584	1.44e-4	SMART
FN3	598	684	2.17e-11	SMART
FN3	701	787	8.62e0	SMART
FN3	803	888	9.92e-6	SMART
FN3	903	983	8.17e0	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000161070
AA Change: V135I

PolyPhen 2 Score 0.037 (Sensitivity: 0.94; Specificity: 0.82)

SMART Domains

Protein: ENSMUSP00000124714
Gene: ENSMUSG00000030092
AA Change: V135I

Domain	Start	End	E-Value	Type
SCOP:d1cs6a4	4	40	5e-4	SMART
IG	57	145	2.28e-7	SMART
IGc2	168	232	4e-12	SMART
IGc2	258	321	4.52e-11	SMART
IGc2	350	414	5.48e-10	SMART
IGc2	440	512	1.44e-4	SMART
FN3	526	612	2.17e-11	SMART
FN3	629	715	8.62e0	SMART
FN3	731	816	9.92e-6	SMART
FN3	831	911	8.17e0	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000162872
AA Change: V207I

PolyPhen 2 Score 0.008 (Sensitivity: 0.96; Specificity: 0.76)

SMART Domains

Protein: ENSMUSP00000124025
Gene: ENSMUSG00000030092
AA Change: V207I

Domain	Start	End	E-Value	Type
signal peptide	1	19	N/A	INTRINSIC
IGc2	41	107	5.24e-7	SMART
IG	129	217	2.28e-7	SMART
IGc2	240	304	4e-12	SMART
IGc2	330	393	4.52e-11	SMART
IGc2	422	486	5.48e-10	SMART
IGc2	512	584	1.44e-4	SMART
FN3	598	684	2.17e-11	SMART
FN3	701	787	8.62e0	SMART
FN3	803	888	9.92e-6	SMART
FN3	903	983	8.17e0	SMART

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.5%
20x: 95.7%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is a member of the immunoglobulin superfamily. It is a glycosylphosphatidylinositol (GPI)-anchored neuronal membrane protein that functions as a cell adhesion molecule. It may play a role in the formation of axon connections in the developing nervous system. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jan 2014]
PHENOTYPE: Mice homozygous for disruption of this gene display impaired coordination without any obvious morphological of physiological abnormalities in the brain. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 24 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Acacb	A	G	5: 114,304,131 (GRCm39)	S185G	possibly damaging	Het
Adgra1	G	A	7: 139,455,601 (GRCm39)	E410K	possibly damaging	Het
Aox1	A	T	1: 58,361,993 (GRCm39)	N733I	probably damaging	Het
Bola3	T	A	6: 83,326,280 (GRCm39)	Y24N	probably benign	Het
Eif2s3y	A	T	Y: 1,020,030 (GRCm39)	M353L	probably benign	Het
Ercc8	C	A	13: 108,297,248 (GRCm39)	P53T	probably damaging	Het
Gan	A	G	8: 117,910,265 (GRCm39)	K65E	probably damaging	Het
Gm1110	T	C	9: 26,792,339 (GRCm39)	E597G	probably benign	Het
Gsdmc4	T	A	15: 63,773,909 (GRCm39)	H81L	probably benign	Het
Hs2st1	T	A	3: 144,170,899 (GRCm39)	N91I	probably damaging	Het
Or1e31	A	G	11: 73,689,933 (GRCm39)	S217P	possibly damaging	Het
Or7a41	A	T	10: 78,870,887 (GRCm39)	I86F	probably damaging	Het
Pgr	T	C	9: 8,901,819 (GRCm39)	S451P	possibly damaging	Het
Pira13	T	A	7: 3,825,686 (GRCm39)	R394S	probably damaging	Het
Pwp2	A	G	10: 78,018,532 (GRCm39)	L84S	possibly damaging	Het
Rab1a	T	A	11: 20,173,068 (GRCm39)		probably null	Het
Secisbp2	T	C	13: 51,824,915 (GRCm39)	S388P	probably benign	Het
Sh3rf1	C	T	8: 61,679,321 (GRCm39)	P121L	probably benign	Het
Sybu	T	C	15: 44,609,752 (GRCm39)	K172R	probably damaging	Het
Topbp1	C	T	9: 103,219,339 (GRCm39)	A1197V	probably benign	Het
Ttf1	T	A	2: 28,955,395 (GRCm39)	V253D	possibly damaging	Het
Ugt2a2	A	T	5: 87,622,488 (GRCm39)	V160E	probably damaging	Het
Vmn1r81	G	T	7: 11,993,964 (GRCm39)	Q215K	probably damaging	Het
Zfp653	A	G	9: 21,977,026 (GRCm39)	L147P	probably damaging	Het

Other mutations in Cntn6

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00547:Cntn6	APN	6	104,627,361 (GRCm39)	missense	probably damaging	0.99
IGL01331:Cntn6	APN	6	104,751,484 (GRCm39)	missense	probably damaging	1.00
IGL01619:Cntn6	APN	6	104,705,335 (GRCm39)	splice site	probably benign
IGL02028:Cntn6	APN	6	104,836,387 (GRCm39)	missense	probably damaging	0.99
IGL02420:Cntn6	APN	6	104,823,103 (GRCm39)	critical splice donor site	probably null
IGL02557:Cntn6	APN	6	104,751,496 (GRCm39)	missense	probably damaging	1.00
IGL03000:Cntn6	APN	6	104,781,347 (GRCm39)	missense	probably damaging	1.00
IGL03367:Cntn6	APN	6	104,781,299 (GRCm39)	missense	probably damaging	1.00
IGL03383:Cntn6	APN	6	104,753,418 (GRCm39)	splice site	probably benign
PIT4366001:Cntn6	UTSW	6	104,809,498 (GRCm39)	missense	probably benign	0.05
R0490:Cntn6	UTSW	6	104,810,879 (GRCm39)	missense	possibly damaging	0.91
R0583:Cntn6	UTSW	6	104,753,275 (GRCm39)	missense	possibly damaging	0.79
R0636:Cntn6	UTSW	6	104,840,109 (GRCm39)	missense	probably benign	0.00
R0654:Cntn6	UTSW	6	104,753,389 (GRCm39)	missense	probably benign	0.00
R0960:Cntn6	UTSW	6	104,751,441 (GRCm39)	missense	probably benign	0.01
R1241:Cntn6	UTSW	6	104,809,470 (GRCm39)	missense	probably damaging	1.00
R1385:Cntn6	UTSW	6	104,838,861 (GRCm39)	missense	probably benign	0.07
R1401:Cntn6	UTSW	6	104,781,359 (GRCm39)	missense	possibly damaging	0.65
R1478:Cntn6	UTSW	6	104,753,389 (GRCm39)	missense	probably benign	0.00
R1542:Cntn6	UTSW	6	104,825,061 (GRCm39)	missense	probably damaging	1.00
R1593:Cntn6	UTSW	6	104,809,541 (GRCm39)	missense	possibly damaging	0.58
R1840:Cntn6	UTSW	6	104,751,441 (GRCm39)	missense	probably damaging	1.00
R2066:Cntn6	UTSW	6	104,838,783 (GRCm39)	nonsense	probably null
R2097:Cntn6	UTSW	6	104,838,910 (GRCm39)	missense	probably damaging	0.99
R2289:Cntn6	UTSW	6	104,545,989 (GRCm39)	start gained	probably benign
R2429:Cntn6	UTSW	6	104,627,526 (GRCm39)	missense	possibly damaging	0.96
R4009:Cntn6	UTSW	6	104,810,783 (GRCm39)	missense	probably damaging	0.98
R4476:Cntn6	UTSW	6	104,749,522 (GRCm39)	missense	probably damaging	1.00
R4664:Cntn6	UTSW	6	104,705,245 (GRCm39)	missense	probably benign	0.20
R4666:Cntn6	UTSW	6	104,705,245 (GRCm39)	missense	probably benign	0.20
R4701:Cntn6	UTSW	6	104,781,321 (GRCm39)	missense	probably benign	0.01
R4780:Cntn6	UTSW	6	104,822,745 (GRCm39)	missense	probably damaging	1.00
R4854:Cntn6	UTSW	6	104,836,436 (GRCm39)	missense	possibly damaging	0.95
R4965:Cntn6	UTSW	6	104,751,435 (GRCm39)	missense	probably damaging	0.99
R5051:Cntn6	UTSW	6	104,749,558 (GRCm39)	missense	probably damaging	1.00
R5075:Cntn6	UTSW	6	104,809,991 (GRCm39)	missense	probably damaging	1.00
R5152:Cntn6	UTSW	6	104,546,074 (GRCm39)	intron	probably benign
R5291:Cntn6	UTSW	6	104,703,096 (GRCm39)	missense	probably damaging	1.00
R5388:Cntn6	UTSW	6	104,809,523 (GRCm39)	missense	probably damaging	1.00
R5852:Cntn6	UTSW	6	104,812,706 (GRCm39)	missense	probably damaging	0.97
R5937:Cntn6	UTSW	6	104,810,064 (GRCm39)	missense	possibly damaging	0.68
R5980:Cntn6	UTSW	6	104,825,093 (GRCm39)	missense	probably damaging	0.98
R6290:Cntn6	UTSW	6	104,744,851 (GRCm39)	missense	probably damaging	1.00
R6338:Cntn6	UTSW	6	104,703,100 (GRCm39)	missense	probably damaging	1.00
R6396:Cntn6	UTSW	6	104,627,461 (GRCm39)	missense	probably damaging	1.00
R6447:Cntn6	UTSW	6	104,836,409 (GRCm39)	missense	probably damaging	1.00
R6860:Cntn6	UTSW	6	104,838,907 (GRCm39)	missense	possibly damaging	0.95
R6871:Cntn6	UTSW	6	104,822,719 (GRCm39)	frame shift	probably null
R7012:Cntn6	UTSW	6	104,751,441 (GRCm39)	missense	probably benign	0.01
R7012:Cntn6	UTSW	6	104,703,223 (GRCm39)	missense	probably damaging	0.98
R7337:Cntn6	UTSW	6	104,627,491 (GRCm39)	missense	probably damaging	0.99
R7658:Cntn6	UTSW	6	104,627,444 (GRCm39)	missense	probably benign	0.29
R8133:Cntn6	UTSW	6	104,705,298 (GRCm39)	missense	probably benign	0.19
R8463:Cntn6	UTSW	6	104,749,580 (GRCm39)	missense	possibly damaging	0.64
R8909:Cntn6	UTSW	6	104,825,093 (GRCm39)	missense	probably benign	0.05
R9232:Cntn6	UTSW	6	104,815,781 (GRCm39)	missense	probably damaging	1.00
R9287:Cntn6	UTSW	6	104,809,471 (GRCm39)	missense	possibly damaging	0.89
R9454:Cntn6	UTSW	6	104,781,308 (GRCm39)	missense	possibly damaging	0.82
R9698:Cntn6	UTSW	6	104,810,044 (GRCm39)	nonsense	probably null
X0020:Cntn6	UTSW	6	104,744,845 (GRCm39)	missense	probably benign	0.00
Z1177:Cntn6	UTSW	6	104,809,545 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- GAATTTATAGATACGGTTGCAGTGG -3'
(R):5'- TAGTAATGTCTCATCTTCACTGTGC -3'

Sequencing Primer
(F):5'- TACGGTTGCAGTGGAGATAATGC -3'
(R):5'- ACCTGCCCACAATGTAAG -3'

Posted On

2015-02-05