Incidental Mutation 'R3109:Vmn1r175'
ID |
263696 |
Institutional Source |
Beutler Lab
|
Gene Symbol |
Vmn1r175
|
Ensembl Gene |
ENSMUSG00000095632 |
Gene Name |
vomeronasal 1 receptor 175 |
Synonyms |
Gm6299 |
MMRRC Submission |
040583-MU
|
Accession Numbers |
|
Essential gene? |
Probably non essential
(E-score: 0.073)
|
Stock # |
R3109 (G1)
|
Quality Score |
174 |
Status
|
Validated
|
Chromosome |
7 |
Chromosomal Location |
23507711-23508625 bp(-) (GRCm39) |
Type of Mutation |
missense |
DNA Base Change (assembly) |
A to G
at 23508393 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Valine to Alanine
at position 78
(V78A)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000154170
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000166141]
[ENSMUST00000228383]
|
AlphaFold |
K7N6T9 |
Predicted Effect |
probably benign
Transcript: ENSMUST00000166141
AA Change: V78A
PolyPhen 2
Score 0.002 (Sensitivity: 0.99; Specificity: 0.30)
|
SMART Domains |
Protein: ENSMUSP00000126357 Gene: ENSMUSG00000095632 AA Change: V78A
Domain | Start | End | E-Value | Type |
Pfam:TAS2R
|
8 |
296 |
8.8e-15 |
PFAM |
Pfam:7tm_1
|
13 |
285 |
2.5e-6 |
PFAM |
Pfam:V1R
|
41 |
295 |
4.4e-22 |
PFAM |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000228383
AA Change: V78A
PolyPhen 2
Score 0.002 (Sensitivity: 0.99; Specificity: 0.30)
|
Meta Mutation Damage Score |
0.0898 |
Coding Region Coverage |
- 1x: 99.2%
- 3x: 98.6%
- 10x: 97.4%
- 20x: 95.4%
|
Validation Efficiency |
100% (33/33) |
Allele List at MGI |
|
Other mutations in this stock |
Total: 29 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
6820408C15Rik |
A |
G |
2: 152,284,376 (GRCm39) |
E323G |
probably damaging |
Het |
Adamts20 |
T |
C |
15: 94,243,785 (GRCm39) |
|
probably benign |
Het |
Alkbh3 |
T |
C |
2: 93,835,108 (GRCm39) |
E80G |
probably damaging |
Het |
Amfr |
T |
C |
8: 94,726,934 (GRCm39) |
Y93C |
probably damaging |
Het |
Arid2 |
T |
C |
15: 96,254,627 (GRCm39) |
Y158H |
probably damaging |
Het |
Camk1g |
T |
C |
1: 193,037,301 (GRCm39) |
Y133C |
probably damaging |
Het |
Cnnm1 |
T |
C |
19: 43,430,000 (GRCm39) |
C373R |
probably damaging |
Het |
Cnot1 |
A |
G |
8: 96,462,377 (GRCm39) |
V1691A |
probably damaging |
Het |
Cubn |
T |
C |
2: 13,367,158 (GRCm39) |
S1571G |
possibly damaging |
Het |
Dclk2 |
G |
A |
3: 86,827,342 (GRCm39) |
P46S |
probably damaging |
Het |
Dennd1b |
G |
A |
1: 138,969,654 (GRCm39) |
|
probably benign |
Het |
Dmrt2 |
C |
A |
19: 25,655,055 (GRCm39) |
T218N |
probably benign |
Het |
Drd4 |
T |
A |
7: 140,872,195 (GRCm39) |
V82E |
possibly damaging |
Het |
Fat1 |
G |
A |
8: 45,498,210 (GRCm39) |
|
probably null |
Het |
Fyn |
G |
C |
10: 39,427,451 (GRCm39) |
D445H |
probably damaging |
Het |
Igfn1 |
T |
C |
1: 135,925,586 (GRCm39) |
D56G |
probably benign |
Het |
Igkv11-125 |
T |
C |
6: 67,890,855 (GRCm39) |
F58L |
possibly damaging |
Het |
Klhdc4 |
A |
C |
8: 122,548,073 (GRCm39) |
H72Q |
probably damaging |
Het |
Kmt2c |
A |
G |
5: 25,480,733 (GRCm39) |
Y1459H |
probably damaging |
Het |
Lama2 |
C |
T |
10: 26,877,231 (GRCm39) |
E2652K |
probably benign |
Het |
Muc5b |
C |
T |
7: 141,412,496 (GRCm39) |
T1814M |
unknown |
Het |
Ntrk3 |
C |
T |
7: 78,110,263 (GRCm39) |
V324M |
probably benign |
Het |
Or52s1b |
T |
A |
7: 102,822,293 (GRCm39) |
M184L |
probably damaging |
Het |
Per2 |
A |
T |
1: 91,373,297 (GRCm39) |
C164S |
probably benign |
Het |
Ptprn2 |
A |
G |
12: 116,839,800 (GRCm39) |
D441G |
probably benign |
Het |
Rbl2 |
T |
A |
8: 91,828,863 (GRCm39) |
I588N |
probably benign |
Het |
Rslcan18 |
C |
T |
13: 67,246,671 (GRCm39) |
E314K |
possibly damaging |
Het |
Ubr3 |
A |
T |
2: 69,819,184 (GRCm39) |
T1325S |
probably damaging |
Het |
Unc45a |
A |
G |
7: 79,981,294 (GRCm39) |
|
probably benign |
Het |
|
Other mutations in Vmn1r175 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL02944:Vmn1r175
|
APN |
7 |
23,508,591 (GRCm39) |
missense |
probably damaging |
0.97 |
PIT4531001:Vmn1r175
|
UTSW |
7 |
23,508,603 (GRCm39) |
missense |
possibly damaging |
0.62 |
R1163:Vmn1r175
|
UTSW |
7 |
23,507,937 (GRCm39) |
missense |
probably benign |
0.30 |
R1901:Vmn1r175
|
UTSW |
7 |
23,508,218 (GRCm39) |
missense |
probably benign |
0.00 |
R1926:Vmn1r175
|
UTSW |
7 |
23,508,466 (GRCm39) |
missense |
possibly damaging |
0.81 |
R1957:Vmn1r175
|
UTSW |
7 |
23,507,808 (GRCm39) |
missense |
probably benign |
0.21 |
R2163:Vmn1r175
|
UTSW |
7 |
23,508,352 (GRCm39) |
missense |
probably benign |
0.29 |
R2381:Vmn1r175
|
UTSW |
7 |
23,508,093 (GRCm39) |
missense |
probably benign |
0.31 |
R3419:Vmn1r175
|
UTSW |
7 |
23,508,075 (GRCm39) |
missense |
probably damaging |
0.96 |
R3941:Vmn1r175
|
UTSW |
7 |
23,508,393 (GRCm39) |
missense |
probably benign |
0.00 |
R4982:Vmn1r175
|
UTSW |
7 |
23,508,494 (GRCm39) |
missense |
possibly damaging |
0.61 |
R5191:Vmn1r175
|
UTSW |
7 |
23,508,447 (GRCm39) |
missense |
possibly damaging |
0.91 |
R5326:Vmn1r175
|
UTSW |
7 |
23,508,531 (GRCm39) |
missense |
possibly damaging |
0.88 |
R5333:Vmn1r175
|
UTSW |
7 |
23,508,004 (GRCm39) |
missense |
possibly damaging |
0.69 |
R5476:Vmn1r175
|
UTSW |
7 |
23,508,556 (GRCm39) |
missense |
possibly damaging |
0.82 |
R5542:Vmn1r175
|
UTSW |
7 |
23,508,531 (GRCm39) |
missense |
possibly damaging |
0.88 |
R5761:Vmn1r175
|
UTSW |
7 |
23,507,905 (GRCm39) |
missense |
probably benign |
0.01 |
R5918:Vmn1r175
|
UTSW |
7 |
23,508,372 (GRCm39) |
missense |
probably damaging |
1.00 |
R6163:Vmn1r175
|
UTSW |
7 |
23,508,591 (GRCm39) |
missense |
possibly damaging |
0.71 |
R6563:Vmn1r175
|
UTSW |
7 |
23,508,030 (GRCm39) |
missense |
possibly damaging |
0.61 |
R7476:Vmn1r175
|
UTSW |
7 |
23,507,847 (GRCm39) |
missense |
probably benign |
0.01 |
R7616:Vmn1r175
|
UTSW |
7 |
23,508,031 (GRCm39) |
missense |
possibly damaging |
0.79 |
R8100:Vmn1r175
|
UTSW |
7 |
23,508,012 (GRCm39) |
missense |
probably damaging |
1.00 |
R8157:Vmn1r175
|
UTSW |
7 |
23,508,523 (GRCm39) |
missense |
probably benign |
0.00 |
R8699:Vmn1r175
|
UTSW |
7 |
23,508,234 (GRCm39) |
missense |
probably benign |
0.01 |
R8744:Vmn1r175
|
UTSW |
7 |
23,508,403 (GRCm39) |
missense |
probably benign |
0.00 |
R9595:Vmn1r175
|
UTSW |
7 |
23,508,508 (GRCm39) |
missense |
probably damaging |
0.98 |
|
Predicted Primers |
PCR Primer
(F):5'- GTGGTGGAGCAAACCCATTTG -3'
(R):5'- AGGTCCTCTTGCTTTGCCAG -3'
Sequencing Primer
(F):5'- CAAATATACCTCACAAATTTGGGGGC -3'
(R):5'- CCTCTTGCTTTGCCAGGTTGG -3'
|
Posted On |
2015-02-05 |