Incidental Mutation 'R3111:Syce1l'
| ID |
263773 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Syce1l
|
| Ensembl Gene |
ENSMUSG00000033409 |
| Gene Name |
synaptonemal complex central element protein 1 like |
| Synonyms |
4930481F22Rik, mmrp2 |
| Accession Numbers |
|
| Essential gene? |
Non essential
(E-score: 0.000)
|
| Stock # |
R3111 ()
|
| Quality Score |
225 |
|
Status
|
Not validated
|
| Chromosome |
8 |
| Chromosomal Location |
114369845-114382165 bp(+) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
A to G
at 114381579 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Glutamine to Arginine
at position 164
(Q164R)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000148356
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000034219]
[ENSMUST00000095173]
[ENSMUST00000212269]
|
| AlphaFold |
Q5D525 |
| Predicted Effect |
silent
Transcript: ENSMUST00000034219
|
| SMART Domains |
Protein: ENSMUSP00000034219
Gene: ENSMUSG00000033409
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:SYCE1
|
45 |
135 |
4.4e-39 |
PFAM |
|
low complexity region
|
139 |
154 |
N/A |
INTRINSIC |
|
low complexity region
|
196 |
212 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000095173
AA Change: Q185R
PolyPhen 2
Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)
|
| SMART Domains |
Protein: ENSMUSP00000092796
Gene: ENSMUSG00000033409
AA Change: Q185R
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:SYCE1
|
45 |
172 |
8.3e-47 |
PFAM |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000212017
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000212269
AA Change: Q164R
PolyPhen 2
Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)
|
| Meta Mutation Damage Score |
0.0898 |
| Coding Region Coverage |
- 1x: 98.8%
- 3x: 98.4%
- 10x: 97.3%
- 20x: 95.2%
|
| Validation Efficiency |
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 31 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Abca6 |
T |
A |
11: 110,069,655 (GRCm39) |
K1554* |
probably null |
Het |
| Car12 |
C |
T |
9: 66,661,008 (GRCm39) |
T124I |
probably damaging |
Het |
| Ccdc180 |
T |
A |
4: 45,900,470 (GRCm39) |
I278K |
possibly damaging |
Het |
| Disp1 |
A |
T |
1: 182,869,087 (GRCm39) |
M1111K |
probably damaging |
Het |
| Fpr1 |
A |
T |
17: 18,096,897 (GRCm39) |
M364K |
probably benign |
Het |
| Gad1-ps |
A |
G |
10: 99,280,383 (GRCm39) |
|
noncoding transcript |
Het |
| Grn |
A |
G |
11: 102,324,069 (GRCm39) |
T53A |
probably benign |
Het |
| Hmgxb3 |
T |
C |
18: 61,280,454 (GRCm39) |
N683S |
probably damaging |
Het |
| Jarid2 |
T |
A |
13: 45,059,752 (GRCm39) |
N661K |
probably damaging |
Het |
| Mfap3 |
T |
C |
11: 57,420,406 (GRCm39) |
V129A |
probably damaging |
Het |
| Mip |
T |
A |
10: 128,061,875 (GRCm39) |
L42* |
probably null |
Het |
| Myh4 |
T |
A |
11: 67,137,276 (GRCm39) |
L499Q |
possibly damaging |
Het |
| Ncln |
C |
T |
10: 81,323,519 (GRCm39) |
V51I |
probably benign |
Het |
| Nmnat3 |
T |
A |
9: 98,281,533 (GRCm39) |
I45N |
probably damaging |
Het |
| Or1e32 |
T |
C |
11: 73,705,012 (GRCm39) |
R299G |
probably benign |
Het |
| Osbpl9 |
T |
C |
4: 108,940,290 (GRCm39) |
I232V |
probably benign |
Het |
| Pcdha12 |
A |
T |
18: 37,155,243 (GRCm39) |
H654L |
probably damaging |
Het |
| Pcmtd2 |
A |
T |
2: 181,496,922 (GRCm39) |
I300F |
probably damaging |
Het |
| Pds5b |
T |
C |
5: 150,643,372 (GRCm39) |
S65P |
probably damaging |
Het |
| Pgm1 |
C |
T |
4: 99,813,222 (GRCm39) |
T11I |
probably benign |
Het |
| Phf24 |
G |
A |
4: 42,938,316 (GRCm39) |
V226I |
probably benign |
Het |
| Pigo |
T |
C |
4: 43,021,083 (GRCm39) |
T612A |
probably benign |
Het |
| Plekhh3 |
T |
C |
11: 101,054,973 (GRCm39) |
|
probably benign |
Het |
| Ptprf |
T |
C |
4: 118,068,629 (GRCm39) |
D1713G |
probably damaging |
Het |
| Rbp3 |
G |
T |
14: 33,676,069 (GRCm39) |
V6F |
probably benign |
Het |
| Sac3d1 |
T |
C |
19: 6,168,387 (GRCm39) |
K77R |
probably benign |
Het |
| Slc1a6 |
T |
A |
10: 78,624,915 (GRCm39) |
S107T |
probably damaging |
Het |
| Tgfbi |
T |
C |
13: 56,757,547 (GRCm39) |
Y30H |
probably damaging |
Het |
| Tmem217 |
A |
T |
17: 29,745,532 (GRCm39) |
V66D |
probably damaging |
Het |
| Tnn |
C |
A |
1: 159,934,625 (GRCm39) |
D1263Y |
probably damaging |
Het |
| Ylpm1 |
T |
C |
12: 85,076,145 (GRCm39) |
F499L |
probably damaging |
Het |
|
| Other mutations in Syce1l |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00339:Syce1l
|
APN |
8 |
114,376,134 (GRCm39) |
missense |
probably damaging |
0.99 |
|
IGL00783:Syce1l
|
APN |
8 |
114,379,494 (GRCm39) |
missense |
probably benign |
0.23 |
|
IGL00784:Syce1l
|
APN |
8 |
114,379,494 (GRCm39) |
missense |
probably benign |
0.23 |
|
IGL02748:Syce1l
|
APN |
8 |
114,382,097 (GRCm39) |
utr 3 prime |
probably benign |
|
|
IGL03003:Syce1l
|
APN |
8 |
114,380,699 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R0101:Syce1l
|
UTSW |
8 |
114,382,061 (GRCm39) |
missense |
probably benign |
0.41 |
|
R0486:Syce1l
|
UTSW |
8 |
114,381,395 (GRCm39) |
critical splice acceptor site |
probably null |
|
|
R0492:Syce1l
|
UTSW |
8 |
114,380,700 (GRCm39) |
missense |
possibly damaging |
0.86 |
|
R1709:Syce1l
|
UTSW |
8 |
114,380,662 (GRCm39) |
critical splice acceptor site |
probably null |
|
|
R1783:Syce1l
|
UTSW |
8 |
114,381,466 (GRCm39) |
missense |
possibly damaging |
0.66 |
|
R2307:Syce1l
|
UTSW |
8 |
114,369,937 (GRCm39) |
critical splice donor site |
probably null |
|
|
R3110:Syce1l
|
UTSW |
8 |
114,381,579 (GRCm39) |
missense |
probably benign |
|
|
R3112:Syce1l
|
UTSW |
8 |
114,381,579 (GRCm39) |
missense |
probably benign |
|
|
R3790:Syce1l
|
UTSW |
8 |
114,369,897 (GRCm39) |
missense |
possibly damaging |
0.63 |
|
R5112:Syce1l
|
UTSW |
8 |
114,378,274 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R5398:Syce1l
|
UTSW |
8 |
114,379,145 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6373:Syce1l
|
UTSW |
8 |
114,376,143 (GRCm39) |
missense |
probably benign |
|
|
R7407:Syce1l
|
UTSW |
8 |
114,381,770 (GRCm39) |
nonsense |
probably null |
|
|
R8296:Syce1l
|
UTSW |
8 |
114,380,721 (GRCm39) |
missense |
possibly damaging |
0.78 |
|
R9262:Syce1l
|
UTSW |
8 |
114,380,738 (GRCm39) |
critical splice donor site |
probably null |
|
|
R9475:Syce1l
|
UTSW |
8 |
114,381,735 (GRCm39) |
missense |
probably benign |
|
|
R9600:Syce1l
|
UTSW |
8 |
114,381,750 (GRCm39) |
missense |
unknown |
|
|
Z1176:Syce1l
|
UTSW |
8 |
114,382,049 (GRCm39) |
missense |
probably benign |
0.26 |
|
| Predicted Primers |
PCR Primer
(F):5'- TTCATCCTGACAGGTCCTGC -3'
(R):5'- ATTCTGAGCTTCTGGGCTGC -3'
Sequencing Primer
(F):5'- TGACAGGTCCTGCAGCAG -3'
(R):5'- GGACTGCCCCTCCAATTC -3'
|
| Posted On |
2015-02-05 |
Incidental Mutation