Incidental Mutation 'R3111:Gad1-ps'
ID |
263783 |
Institutional Source |
Beutler Lab
|
Gene Symbol |
Gad1-ps
|
Ensembl Gene |
ENSMUSG00000090665 |
Gene Name |
glutamate decarboxylase 1, pseudogene |
Synonyms |
Gad-1ps |
Accession Numbers |
|
Essential gene? |
Probably non essential
(E-score: 0.231)
|
Stock # |
R3111 ()
|
Quality Score |
225 |
Status
|
Not validated
|
Chromosome |
10 |
Chromosomal Location |
99279906-99281681 bp(+) (GRCm39) |
Type of Mutation |
exon |
DNA Base Change (assembly) |
A to G
at 99280383 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
|
Gene Model |
predicted gene model for transcript(s):
|
AlphaFold |
no structure available at present |
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000167243
|
SMART Domains |
Protein: ENSMUSP00000133048 Gene: ENSMUSG00000090665
Domain | Start | End | E-Value | Type |
Pfam:Pyridoxal_deC
|
1 |
368 |
4.3e-153 |
PFAM |
Pfam:Beta_elim_lyase
|
91 |
436 |
7.3e-8 |
PFAM |
Pfam:Aminotran_5
|
130 |
370 |
4.7e-7 |
PFAM |
|
Coding Region Coverage |
- 1x: 98.8%
- 3x: 98.4%
- 10x: 97.3%
- 20x: 95.2%
|
Validation Efficiency |
|
Allele List at MGI |
|
Other mutations in this stock |
Total: 31 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
Abca6 |
T |
A |
11: 110,069,655 (GRCm39) |
K1554* |
probably null |
Het |
Car12 |
C |
T |
9: 66,661,008 (GRCm39) |
T124I |
probably damaging |
Het |
Ccdc180 |
T |
A |
4: 45,900,470 (GRCm39) |
I278K |
possibly damaging |
Het |
Disp1 |
A |
T |
1: 182,869,087 (GRCm39) |
M1111K |
probably damaging |
Het |
Fpr1 |
A |
T |
17: 18,096,897 (GRCm39) |
M364K |
probably benign |
Het |
Grn |
A |
G |
11: 102,324,069 (GRCm39) |
T53A |
probably benign |
Het |
Hmgxb3 |
T |
C |
18: 61,280,454 (GRCm39) |
N683S |
probably damaging |
Het |
Jarid2 |
T |
A |
13: 45,059,752 (GRCm39) |
N661K |
probably damaging |
Het |
Mfap3 |
T |
C |
11: 57,420,406 (GRCm39) |
V129A |
probably damaging |
Het |
Mip |
T |
A |
10: 128,061,875 (GRCm39) |
L42* |
probably null |
Het |
Myh4 |
T |
A |
11: 67,137,276 (GRCm39) |
L499Q |
possibly damaging |
Het |
Ncln |
C |
T |
10: 81,323,519 (GRCm39) |
V51I |
probably benign |
Het |
Nmnat3 |
T |
A |
9: 98,281,533 (GRCm39) |
I45N |
probably damaging |
Het |
Or1e32 |
T |
C |
11: 73,705,012 (GRCm39) |
R299G |
probably benign |
Het |
Osbpl9 |
T |
C |
4: 108,940,290 (GRCm39) |
I232V |
probably benign |
Het |
Pcdha12 |
A |
T |
18: 37,155,243 (GRCm39) |
H654L |
probably damaging |
Het |
Pcmtd2 |
A |
T |
2: 181,496,922 (GRCm39) |
I300F |
probably damaging |
Het |
Pds5b |
T |
C |
5: 150,643,372 (GRCm39) |
S65P |
probably damaging |
Het |
Pgm1 |
C |
T |
4: 99,813,222 (GRCm39) |
T11I |
probably benign |
Het |
Phf24 |
G |
A |
4: 42,938,316 (GRCm39) |
V226I |
probably benign |
Het |
Pigo |
T |
C |
4: 43,021,083 (GRCm39) |
T612A |
probably benign |
Het |
Plekhh3 |
T |
C |
11: 101,054,973 (GRCm39) |
|
probably benign |
Het |
Ptprf |
T |
C |
4: 118,068,629 (GRCm39) |
D1713G |
probably damaging |
Het |
Rbp3 |
G |
T |
14: 33,676,069 (GRCm39) |
V6F |
probably benign |
Het |
Sac3d1 |
T |
C |
19: 6,168,387 (GRCm39) |
K77R |
probably benign |
Het |
Slc1a6 |
T |
A |
10: 78,624,915 (GRCm39) |
S107T |
probably damaging |
Het |
Syce1l |
A |
G |
8: 114,381,579 (GRCm39) |
Q164R |
probably benign |
Het |
Tgfbi |
T |
C |
13: 56,757,547 (GRCm39) |
Y30H |
probably damaging |
Het |
Tmem217 |
A |
T |
17: 29,745,532 (GRCm39) |
V66D |
probably damaging |
Het |
Tnn |
C |
A |
1: 159,934,625 (GRCm39) |
D1263Y |
probably damaging |
Het |
Ylpm1 |
T |
C |
12: 85,076,145 (GRCm39) |
F499L |
probably damaging |
Het |
|
Other mutations in Gad1-ps |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL00963:Gad1-ps
|
APN |
10 |
99,281,310 (GRCm39) |
exon |
noncoding transcript |
|
IGL01301:Gad1-ps
|
APN |
10 |
99,281,013 (GRCm39) |
exon |
noncoding transcript |
|
IGL01394:Gad1-ps
|
APN |
10 |
99,281,424 (GRCm39) |
exon |
noncoding transcript |
|
IGL02220:Gad1-ps
|
APN |
10 |
99,281,184 (GRCm39) |
exon |
noncoding transcript |
|
IGL02240:Gad1-ps
|
APN |
10 |
99,280,820 (GRCm39) |
exon |
noncoding transcript |
|
IGL03406:Gad1-ps
|
APN |
10 |
99,280,641 (GRCm39) |
exon |
noncoding transcript |
|
ANU18:Gad1-ps
|
UTSW |
10 |
99,281,013 (GRCm39) |
exon |
noncoding transcript |
|
R0305:Gad1-ps
|
UTSW |
10 |
99,280,665 (GRCm39) |
exon |
noncoding transcript |
|
R0446:Gad1-ps
|
UTSW |
10 |
99,281,383 (GRCm39) |
exon |
noncoding transcript |
|
R0538:Gad1-ps
|
UTSW |
10 |
99,280,854 (GRCm39) |
exon |
noncoding transcript |
|
R1511:Gad1-ps
|
UTSW |
10 |
99,281,331 (GRCm39) |
exon |
noncoding transcript |
|
R1734:Gad1-ps
|
UTSW |
10 |
99,281,637 (GRCm39) |
exon |
noncoding transcript |
|
R1745:Gad1-ps
|
UTSW |
10 |
99,281,386 (GRCm39) |
exon |
noncoding transcript |
|
R1886:Gad1-ps
|
UTSW |
10 |
99,281,444 (GRCm39) |
exon |
noncoding transcript |
|
R3617:Gad1-ps
|
UTSW |
10 |
99,281,260 (GRCm39) |
exon |
noncoding transcript |
|
R5042:Gad1-ps
|
UTSW |
10 |
99,281,516 (GRCm39) |
exon |
noncoding transcript |
|
R5223:Gad1-ps
|
UTSW |
10 |
99,281,009 (GRCm39) |
exon |
noncoding transcript |
|
R5234:Gad1-ps
|
UTSW |
10 |
99,281,188 (GRCm39) |
exon |
noncoding transcript |
|
R5275:Gad1-ps
|
UTSW |
10 |
99,280,751 (GRCm39) |
exon |
noncoding transcript |
|
R5295:Gad1-ps
|
UTSW |
10 |
99,280,751 (GRCm39) |
exon |
noncoding transcript |
|
R5334:Gad1-ps
|
UTSW |
10 |
99,281,009 (GRCm39) |
exon |
noncoding transcript |
|
R5335:Gad1-ps
|
UTSW |
10 |
99,281,009 (GRCm39) |
exon |
noncoding transcript |
|
R5336:Gad1-ps
|
UTSW |
10 |
99,281,009 (GRCm39) |
exon |
noncoding transcript |
|
R5337:Gad1-ps
|
UTSW |
10 |
99,281,009 (GRCm39) |
exon |
noncoding transcript |
|
R5396:Gad1-ps
|
UTSW |
10 |
99,281,009 (GRCm39) |
exon |
noncoding transcript |
|
R5397:Gad1-ps
|
UTSW |
10 |
99,281,009 (GRCm39) |
exon |
noncoding transcript |
|
R5399:Gad1-ps
|
UTSW |
10 |
99,281,009 (GRCm39) |
exon |
noncoding transcript |
|
R5428:Gad1-ps
|
UTSW |
10 |
99,281,009 (GRCm39) |
exon |
noncoding transcript |
|
R5429:Gad1-ps
|
UTSW |
10 |
99,281,009 (GRCm39) |
exon |
noncoding transcript |
|
R5431:Gad1-ps
|
UTSW |
10 |
99,281,009 (GRCm39) |
exon |
noncoding transcript |
|
R5661:Gad1-ps
|
UTSW |
10 |
99,280,901 (GRCm39) |
exon |
noncoding transcript |
|
R5667:Gad1-ps
|
UTSW |
10 |
99,280,395 (GRCm39) |
exon |
noncoding transcript |
|
R5671:Gad1-ps
|
UTSW |
10 |
99,280,395 (GRCm39) |
exon |
noncoding transcript |
|
R5885:Gad1-ps
|
UTSW |
10 |
99,281,009 (GRCm39) |
exon |
noncoding transcript |
|
R5886:Gad1-ps
|
UTSW |
10 |
99,281,009 (GRCm39) |
exon |
noncoding transcript |
|
|
Predicted Primers |
PCR Primer
(F):5'- TCCTGTGAAAACGGTGACCC -3'
(R):5'- AACACGGGTGCAATTTCATATG -3'
Sequencing Primer
(F):5'- GCTCAAGATCTGCTTCCAGC -3'
(R):5'- CACGGGTGCAATTTCATATGTAAAC -3'
|
Posted On |
2015-02-05 |