Mutagenetix > Incidental Mutation

Incidental Mutation 'R3055:Ints12'

265112

Institutional Source

Beutler Lab

Gene Symbol

Ints12

Ensembl Gene

ENSMUSG00000028016

Gene Name

integrator complex subunit 12

Synonyms

Phf22, 4930529N21Rik, 1110020M19Rik, A230056J18Rik, 2810027J24Rik

MMRRC Submission

040564-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R3055 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

132797616-132816749 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

G to A at 132815126 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Methionine to Isoleucine at position 444 (M444I)

Ref Sequence

ENSEMBL: ENSMUSP00000029650 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000029650] [ENSMUST00000147041]

AlphaFold

Q9D168

PDB Structure

Solution structure of PHD domain in protein NP_082203 [SOLUTION NMR]

Predicted Effect

possibly damaging
Transcript: ENSMUST00000029650
AA Change: M444I

PolyPhen 2 Score 0.595 (Sensitivity: 0.87; Specificity: 0.91)

SMART Domains

Protein: ENSMUSP00000029650
Gene: ENSMUSG00000028016
AA Change: M444I

Domain	Start	End	E-Value	Type
internal_repeat_1	23	67	4.54e-5	PROSPERO
low complexity region	74	82	N/A	INTRINSIC
internal_repeat_1	91	139	4.54e-5	PROSPERO
PHD	160	212	4.63e-9	SMART
low complexity region	219	240	N/A	INTRINSIC
low complexity region	269	291	N/A	INTRINSIC
low complexity region	337	373	N/A	INTRINSIC
low complexity region	381	436	N/A	INTRINSIC
low complexity region	451	461	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000147041

SMART Domains

Protein: ENSMUSP00000114238
Gene: ENSMUSG00000040969

Domain	Start	End	E-Value	Type
low complexity region	34	49	N/A	INTRINSIC
RhoGEF	98	284	2.72e-33	SMART
low complexity region	296	312	N/A	INTRINSIC
BAR	315	514	4.8e-29	SMART
SH3	584	643	5.56e-1	SMART
low complexity region	678	689	N/A	INTRINSIC
SH3	709	768	1.95e-10	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000160669

Meta Mutation Damage Score

0.1323

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.3%
20x: 95.0%

Validation Efficiency

100% (50/50)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] INTS12 is a subunit of the Integrator complex, which associates with the C-terminal domain of RNA polymerase II large subunit (POLR2A; MIM 180660) and mediates 3-prime end processing of small nuclear RNAs U1 (RNU1; MIM 180680) and U2 (RNU2; MIM 180690) (Baillat et al., 2005 [PubMed 16239144]).[supplied by OMIM, Mar 2008]

Allele List at MGI

Other mutations in this stock

Total: 50 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2610042L04Rik	A	G	14: 4,348,878 (GRCm38)	E13G	probably damaging	Het
5730596B20Rik	A	T	6: 52,156,108 (GRCm39)		probably benign	Het
Aadacl4fm4	A	G	4: 144,401,268 (GRCm39)	I72T	probably benign	Het
Abca16	A	G	7: 120,035,074 (GRCm39)	M287V	probably benign	Het
Abca7	G	A	10: 79,835,581 (GRCm39)	R283H	probably damaging	Het
Acad11	A	G	9: 103,953,535 (GRCm39)	I126V	probably damaging	Het
Ahrr	A	G	13: 74,373,006 (GRCm39)	V148A	probably damaging	Het
Aldh1l2	T	C	10: 83,338,336 (GRCm39)	K528E	probably benign	Het
Atp6v0a2	T	A	5: 124,765,209 (GRCm39)		probably benign	Het
Atxn10	A	G	15: 85,271,206 (GRCm39)	D248G	probably benign	Het
Bard1	A	G	1: 71,127,390 (GRCm39)	V73A	possibly damaging	Het
Catsper3	T	C	13: 55,956,709 (GRCm39)	S376P	unknown	Het
Ccdc150	A	G	1: 54,328,001 (GRCm39)	N361S	possibly damaging	Het
Cxcr6	A	T	9: 123,639,529 (GRCm39)	I177F	probably damaging	Het
Ddx25	A	G	9: 35,462,647 (GRCm39)	V246A	probably damaging	Het
Drd4	T	C	7: 140,874,392 (GRCm39)	V319A	probably damaging	Het
Dscam	G	A	16: 96,602,555 (GRCm39)	T629I	probably damaging	Het
Evi5l	C	T	8: 4,241,603 (GRCm39)	R311*	probably null	Het
Fxr1	A	G	3: 34,103,333 (GRCm39)	E221G	probably damaging	Het
Gldn	A	T	9: 54,245,807 (GRCm39)	T453S	probably damaging	Het
Ighm	T	A	12: 113,382,596 (GRCm39)		probably benign	Het
Lgr5	T	A	10: 115,302,028 (GRCm39)		probably benign	Het
Mier3	T	A	13: 111,827,837 (GRCm39)	D7E	probably damaging	Het
Mms19	A	T	19: 41,938,527 (GRCm39)		probably benign	Het
Mrpl20	G	T	4: 155,888,329 (GRCm39)	V43F	possibly damaging	Het
Muc5b	G	T	7: 141,417,778 (GRCm39)	V3575F	probably damaging	Het
Naip5	T	C	13: 100,358,386 (GRCm39)	Y950C	probably benign	Het
Or4d2	A	G	11: 87,784,198 (GRCm39)	V184A	possibly damaging	Het
Or5t9	T	C	2: 86,659,471 (GRCm39)	F125S	possibly damaging	Het
Or8b12b	G	T	9: 37,684,489 (GRCm39)	C178F	probably damaging	Het
Pkd1l2	T	A	8: 117,795,054 (GRCm39)		probably null	Het
Prune2	A	G	19: 17,102,407 (GRCm39)	E2522G	probably damaging	Het
Radil	T	C	5: 142,481,161 (GRCm39)	T549A	possibly damaging	Het
Radx	T	A	X: 138,412,306 (GRCm39)	V439E	possibly damaging	Het
Rasa2	G	A	9: 96,493,526 (GRCm39)	L53F	possibly damaging	Het
Rasgrf2	A	G	13: 92,165,583 (GRCm39)	F306L	probably damaging	Het
Rbm19	C	T	5: 120,271,075 (GRCm39)	R633C	probably damaging	Het
Rufy4	T	C	1: 74,186,822 (GRCm39)	C537R	probably damaging	Het
Shfl	AGAGGAGGAGGAGGAGGAGGAGGAGGA	AGAGGAGGAGGAGGAGGAGGAGGA	9: 20,785,013 (GRCm39)		probably benign	Het
Slc4a4	T	A	5: 89,280,366 (GRCm39)	L353H	probably damaging	Het
Slc4a4	T	C	5: 89,373,807 (GRCm39)	V971A	probably damaging	Het
Stil	T	A	4: 114,871,266 (GRCm39)		probably benign	Het
Tjp3	T	C	10: 81,116,341 (GRCm39)	K251R	probably benign	Het
Ugt2b35	A	T	5: 87,149,457 (GRCm39)	Y236F	probably benign	Het
Utp14b	T	A	1: 78,642,442 (GRCm39)	D113E	possibly damaging	Het
Vmn1r121	G	A	7: 20,832,390 (GRCm39)	Q17*	probably null	Het
Vmn2r28	A	T	7: 5,484,391 (GRCm39)	L603Q	probably damaging	Het
Vps13b	A	G	15: 35,646,507 (GRCm39)	E1537G	probably damaging	Het
Xrcc4	T	C	13: 90,210,196 (GRCm39)	T83A	probably benign	Het
Yae1d1	T	C	13: 18,167,827 (GRCm39)	E22G	probably damaging	Het

Other mutations in Ints12

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00585:Ints12	APN	3	132,806,570 (GRCm39)	critical splice donor site	probably null
R0243:Ints12	UTSW	3	132,814,806 (GRCm39)	missense	probably benign	0.37
R0847:Ints12	UTSW	3	132,814,603 (GRCm39)	missense	possibly damaging	0.72
R2118:Ints12	UTSW	3	132,814,921 (GRCm39)	missense	probably damaging	0.98
R2323:Ints12	UTSW	3	132,815,126 (GRCm39)	missense	possibly damaging	0.60
R2324:Ints12	UTSW	3	132,815,126 (GRCm39)	missense	possibly damaging	0.60
R2384:Ints12	UTSW	3	132,814,864 (GRCm39)	splice site	probably null
R3056:Ints12	UTSW	3	132,815,126 (GRCm39)	missense	possibly damaging	0.60
R3919:Ints12	UTSW	3	132,806,444 (GRCm39)	missense	probably benign
R4431:Ints12	UTSW	3	132,808,242 (GRCm39)	missense	probably damaging	1.00
R4594:Ints12	UTSW	3	132,814,629 (GRCm39)	missense	probably benign	0.00
R4598:Ints12	UTSW	3	132,804,214 (GRCm39)	missense	probably benign
R4599:Ints12	UTSW	3	132,804,214 (GRCm39)	missense	probably benign
R4702:Ints12	UTSW	3	132,802,546 (GRCm39)	missense	probably damaging	1.00
R5083:Ints12	UTSW	3	132,806,538 (GRCm39)	missense	possibly damaging	0.54
R5507:Ints12	UTSW	3	132,814,921 (GRCm39)	missense	probably damaging	1.00
R5894:Ints12	UTSW	3	132,804,319 (GRCm39)	missense	probably damaging	1.00
R6647:Ints12	UTSW	3	132,802,639 (GRCm39)	missense	possibly damaging	0.88
R8245:Ints12	UTSW	3	132,814,633 (GRCm39)	missense	probably benign
R8887:Ints12	UTSW	3	132,815,003 (GRCm39)	missense	probably damaging	0.99
R9779:Ints12	UTSW	3	132,812,752 (GRCm39)	missense	probably benign	0.30
Z1176:Ints12	UTSW	3	132,808,225 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- CAAAGTGGGTCTTCCTAGTCCTAG -3'
(R):5'- AGCTCTTGTCATGCATCAGTC -3'

Sequencing Primer
(F):5'- CCTAGTCCTAGTAGTTTAGTTCCTGG -3'
(R):5'- TGTCATGCATCAGTCATTATAATCAC -3'

Posted On

2015-02-05