Mutagenetix > Incidental Mutation

Incidental Mutation 'R2870:Armc2'

266526

Institutional Source

Beutler Lab

Gene Symbol

Armc2

Ensembl Gene

ENSMUSG00000071324

Gene Name

armadillo repeat containing 2

Synonyms

MMRRC Submission

040458-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R2870 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

41914990-42018442 bp(-) (GRCm38)

Type of Mutation

critical splice donor site (1 bp from exon)

DNA Base Change (assembly)

C to T at 41966700 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000125412 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000095729] [ENSMUST00000095729] [ENSMUST00000160262] [ENSMUST00000160262] [ENSMUST00000161927]

AlphaFold

Q3URY6

Predicted Effect

probably null
Transcript: ENSMUST00000095729

SMART Domains

Protein: ENSMUSP00000093397
Gene: ENSMUSG00000071324

Domain	Start	End	E-Value	Type
low complexity region	58	73	N/A	INTRINSIC
low complexity region	222	237	N/A	INTRINSIC
low complexity region	272	281	N/A	INTRINSIC
low complexity region	324	336	N/A	INTRINSIC
ARM	355	393	7.53e1	SMART
ARM	400	453	3.69e1	SMART
ARM	454	496	8.23e1	SMART
Blast:ARM	497	540	1e-16	BLAST
Blast:ARM	542	603	1e-6	BLAST
Blast:ARM	603	649	7e-20	BLAST
Blast:ARM	653	692	3e-8	BLAST
ARM	693	733	4.41e1	SMART
ARM	734	777	2.7e-1	SMART

Predicted Effect

probably null
Transcript: ENSMUST00000095729

SMART Domains

Protein: ENSMUSP00000093397
Gene: ENSMUSG00000071324

Domain	Start	End	E-Value	Type
low complexity region	58	73	N/A	INTRINSIC
low complexity region	222	237	N/A	INTRINSIC
low complexity region	272	281	N/A	INTRINSIC
low complexity region	324	336	N/A	INTRINSIC
ARM	355	393	7.53e1	SMART
ARM	400	453	3.69e1	SMART
ARM	454	496	8.23e1	SMART
Blast:ARM	497	540	1e-16	BLAST
Blast:ARM	542	603	1e-6	BLAST
Blast:ARM	603	649	7e-20	BLAST
Blast:ARM	653	692	3e-8	BLAST
ARM	693	733	4.41e1	SMART
ARM	734	777	2.7e-1	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000105503

Predicted Effect

probably null
Transcript: ENSMUST00000160262

SMART Domains

Protein: ENSMUSP00000125412
Gene: ENSMUSG00000071324

Domain	Start	End	E-Value	Type
low complexity region	58	73	N/A	INTRINSIC
low complexity region	222	237	N/A	INTRINSIC
low complexity region	272	281	N/A	INTRINSIC
low complexity region	324	336	N/A	INTRINSIC
ARM	355	393	7.53e1	SMART
ARM	400	453	3.69e1	SMART
ARM	454	496	8.23e1	SMART
Blast:ARM	497	540	1e-16	BLAST
Blast:ARM	542	603	1e-6	BLAST
Blast:ARM	603	649	7e-20	BLAST
Blast:ARM	653	692	3e-8	BLAST
ARM	693	733	4.41e1	SMART
ARM	734	777	2.7e-1	SMART

Predicted Effect

probably null
Transcript: ENSMUST00000160262

SMART Domains

Protein: ENSMUSP00000125412
Gene: ENSMUSG00000071324

Domain	Start	End	E-Value	Type
low complexity region	58	73	N/A	INTRINSIC
low complexity region	222	237	N/A	INTRINSIC
low complexity region	272	281	N/A	INTRINSIC
low complexity region	324	336	N/A	INTRINSIC
ARM	355	393	7.53e1	SMART
ARM	400	453	3.69e1	SMART
ARM	454	496	8.23e1	SMART
Blast:ARM	497	540	1e-16	BLAST
Blast:ARM	542	603	1e-6	BLAST
Blast:ARM	603	649	7e-20	BLAST
Blast:ARM	653	692	3e-8	BLAST
ARM	693	733	4.41e1	SMART
ARM	734	777	2.7e-1	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000160367

Predicted Effect

probably benign
Transcript: ENSMUST00000161927

SMART Domains

Protein: ENSMUSP00000124049
Gene: ENSMUSG00000071324

Domain	Start	End	E-Value	Type
low complexity region	58	75	N/A	INTRINSIC

Meta Mutation Damage Score

0.9487

Coding Region Coverage

1x: 99.1%
3x: 98.6%
10x: 97.3%
20x: 95.0%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 87 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930444G20Rik	A	T	10: 22,067,379	I234N	probably benign	Het
Actrt3	A	G	3: 30,599,698	V51A	probably damaging	Het
Adgb	C	T	10: 10,431,281		probably null	Het
AI481877	A	C	4: 59,093,850	L226R	probably damaging	Het
Als2	A	G	1: 59,211,137	S483P	probably damaging	Het
Ankrd10	C	T	8: 11,615,682	R306H	probably damaging	Het
Arhgef10	T	C	8: 14,975,093		probably null	Het
Arhgef10	A	G	8: 14,975,666	I459V	probably benign	Het
Atp12a	A	G	14: 56,386,950	R952G	possibly damaging	Het
Atp6v1g1	A	G	4: 63,550,021	Y87C	probably benign	Het
C030034I22Rik	T	A	17: 69,418,111		noncoding transcript	Het
Cacna2d1	G	A	5: 16,312,568	C404Y	probably damaging	Het
Ccdc163	T	C	4: 116,741,861		silent	Het
Ccdc59	A	T	10: 105,841,527	K9M	possibly damaging	Het
Cd6	A	G	19: 10,794,626	I307T	possibly damaging	Het
Clasrp	C	A	7: 19,585,240		probably benign	Het
Csmd2	T	C	4: 128,557,718	F113S	unknown	Het
Csmd3	C	T	15: 47,857,924	G1437D	probably damaging	Het
Cyp4a14	C	A	4: 115,487,301	G456W	probably damaging	Het
Cyp4a30b	A	G	4: 115,458,362	H260R	possibly damaging	Het
Dcp1b	C	T	6: 119,214,774	S217L	probably benign	Het
Dhx57	A	T	17: 80,251,376	D1051E	probably benign	Het
Dmp1	A	G	5: 104,212,108	S217G	probably benign	Het
Eif4enif1	C	T	11: 3,242,586	P805S	probably damaging	Het
Eral1	A	G	11: 78,076,278	I164T	possibly damaging	Het
Esr1	G	A	10: 4,997,890	R481H	probably damaging	Het
Fam19a2	A	T	10: 123,704,365	H42L	possibly damaging	Het
Fan1	A	G	7: 64,363,190	I668T	probably benign	Het
Gbp11	C	T	5: 105,331,000	D191N	probably benign	Het
Gm21759	T	A	5: 8,180,863		probably benign	Het
Gm5454	C	A	13: 103,357,523		noncoding transcript	Het
Gm9874	A	T	17: 30,485,789		probably benign	Het
Gria2	G	A	3: 80,702,492	T670I	probably damaging	Het
Gria4	T	A	9: 4,503,614	N334I	probably damaging	Het
Grm5	T	C	7: 87,602,722	V60A	possibly damaging	Het
Ift172	C	T	5: 31,257,861	V1335I	probably benign	Het
Ino80d	C	T	1: 63,061,039		probably null	Het
Kif1c	A	G	11: 70,724,081	E567G	probably damaging	Het
Krt31	T	G	11: 100,047,873	N298T	possibly damaging	Het
Mapk7	C	A	11: 61,490,212		probably benign	Het
March8	C	T	6: 116,401,145		probably benign	Het
Matr3	T	A	18: 35,572,296	S91R	probably benign	Het
Mdm1	A	G	10: 118,150,942	T267A	probably benign	Het
Mlxip	A	G	5: 123,452,667	M878V	probably benign	Het
Mtm1	T	C	X: 71,296,362		probably benign	Homo
Mtor	T	A	4: 148,540,030	M2089K	probably benign	Het
Mylk2	A	G	2: 152,919,348	K457R	probably damaging	Het
Nell1	A	T	7: 50,249,657		probably benign	Het
Nomo1	C	A	7: 46,046,937	T293N	probably damaging	Het
Odf3l2	G	A	10: 79,645,653	T14I	probably benign	Het
Olfr1080	T	C	2: 86,553,584	D180G	possibly damaging	Het
Olfr1510	T	G	14: 52,410,861	T4P	probably benign	Het
Olfr801	A	T	10: 129,669,759	C253*	probably null	Het
Ostc	T	C	3: 130,703,508	N80S	probably damaging	Het
Otud4	T	A	8: 79,661,073	N300K	possibly damaging	Het
Otx1	A	G	11: 21,998,681		probably benign	Het
Palmd	T	C	3: 116,923,751	R366G	possibly damaging	Het
Pcdhb20	A	T	18: 37,505,780	Q453L	possibly damaging	Het
Pcdhga9	T	A	18: 37,737,471	Y118N	possibly damaging	Het
Pes1	C	A	11: 3,976,834	T372K	probably benign	Het
Plcl1	A	T	1: 55,697,150	D550V	probably benign	Het
Plekhg5	T	A	4: 152,107,503	C433S	probably benign	Het
Plin2	A	G	4: 86,668,678	M1T	probably null	Het
Pold1	C	T	7: 44,543,347		silent	Het
Ppp1r7	T	A	1: 93,357,863		probably null	Het
Psmb8	T	C	17: 34,200,170	I146T	probably damaging	Het
Pzp	A	T	6: 128,485,556		probably null	Het
Rel	T	C	11: 23,761,129	I13V	probably benign	Het
Reln	C	T	5: 22,049,791	V527I	possibly damaging	Het
Retnla	A	G	16: 48,843,612	R90G	probably benign	Het
Slc39a8	T	A	3: 135,886,793		probably null	Het
Slc5a8	A	G	10: 88,904,963	I247V	probably benign	Het
Son	A	G	16: 91,664,317		probably null	Het
Spcs2	T	C	7: 99,839,761	D240G	probably damaging	Het
St5	A	T	7: 109,557,430	Y38N	probably benign	Het
Stx3	A	T	19: 11,789,574	V91D	probably damaging	Het
Taf6l	A	G	19: 8,778,628		probably benign	Het
Tbc1d8	A	G	1: 39,405,317	F187S	probably damaging	Het
Thbs1	C	G	2: 118,119,378	N611K	probably damaging	Het
Tipin	A	C	9: 64,304,327	S232R	probably benign	Het
Tmem132b	A	G	5: 125,638,268	D347G	probably benign	Het
Tmem161a	C	T	8: 70,178,915		probably benign	Het
Vmn2r68	A	C	7: 85,233,626	M306R	probably benign	Het
Vwa7	G	A	17: 35,021,242	M395I	probably damaging	Het
Ybx3	G	A	6: 131,370,413	A253V	probably damaging	Het
Zfp53	A	T	17: 21,508,078	E124D	probably benign	Het
Zzz3	T	A	3: 152,446,844		silent	Het

Other mutations in Armc2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
PIT4131001:Armc2	UTSW	10	41947887	splice site	probably benign
R0144:Armc2	UTSW	10	41947887	splice site	probably benign
R0427:Armc2	UTSW	10	42000410	missense	possibly damaging	0.87
R0540:Armc2	UTSW	10	41922695	missense	probably benign	0.11
R0561:Armc2	UTSW	10	41993192	missense	probably benign	0.02
R0607:Armc2	UTSW	10	41922695	missense	probably benign	0.11
R1099:Armc2	UTSW	10	41917187	missense	probably benign	0.39
R1130:Armc2	UTSW	10	42011834	missense	possibly damaging	0.85
R2116:Armc2	UTSW	10	41963667	missense	probably damaging	0.98
R2870:Armc2	UTSW	10	41966700	critical splice donor site	probably null
R2871:Armc2	UTSW	10	41966700	critical splice donor site	probably null
R2871:Armc2	UTSW	10	41966700	critical splice donor site	probably null
R2872:Armc2	UTSW	10	41966700	critical splice donor site	probably null
R2872:Armc2	UTSW	10	41966700	critical splice donor site	probably null
R2873:Armc2	UTSW	10	41966700	critical splice donor site	probably null
R3083:Armc2	UTSW	10	41966730	missense	probably damaging	1.00
R3771:Armc2	UTSW	10	41922227	missense	probably damaging	1.00
R3784:Armc2	UTSW	10	41922194	missense	probably benign	0.08
R3880:Armc2	UTSW	10	41963725	missense	possibly damaging	0.71
R4024:Armc2	UTSW	10	41993058	missense	probably benign
R4155:Armc2	UTSW	10	42011867	missense	probably damaging	0.96
R4370:Armc2	UTSW	10	41917200	missense	probably benign	0.13
R4378:Armc2	UTSW	10	41993082	missense	possibly damaging	0.66
R4896:Armc2	UTSW	10	41923794	missense	probably damaging	1.00
R5119:Armc2	UTSW	10	41922148	missense	probably damaging	1.00
R5159:Armc2	UTSW	10	42008715	missense	probably damaging	0.96
R5517:Armc2	UTSW	10	41963850	missense	probably benign	0.29
R5640:Armc2	UTSW	10	42011898	missense	possibly damaging	0.87
R5767:Armc2	UTSW	10	42011927	missense	probably benign	0.02
R5965:Armc2	UTSW	10	41922572	missense	possibly damaging	0.94
R6897:Armc2	UTSW	10	41993229	critical splice acceptor site	probably null
R7233:Armc2	UTSW	10	41923804	missense	probably damaging	1.00
R7829:Armc2	UTSW	10	41926860	missense	probably benign
R7832:Armc2	UTSW	10	41966796	missense	probably damaging	1.00
R7999:Armc2	UTSW	10	42011958	missense	possibly damaging	0.62
R8029:Armc2	UTSW	10	41927000	missense	probably damaging	1.00
R8030:Armc2	UTSW	10	41966742	missense	possibly damaging	0.73
R8033:Armc2	UTSW	10	42008684	missense	possibly damaging	0.87
R8191:Armc2	UTSW	10	41963751	missense	probably benign	0.29
R8304:Armc2	UTSW	10	41947939	missense	probably damaging	1.00
R8334:Armc2	UTSW	10	41923765	missense	probably damaging	1.00
R8370:Armc2	UTSW	10	41923837	missense	possibly damaging	0.96
R9142:Armc2	UTSW	10	41975408	missense	probably benign	0.00
R9227:Armc2	UTSW	10	41947939	missense	probably damaging	1.00
R9230:Armc2	UTSW	10	41947939	missense	probably damaging	1.00
R9320:Armc2	UTSW	10	41963778	missense	possibly damaging	0.85
R9708:Armc2	UTSW	10	41963748	missense	possibly damaging	0.87
R9743:Armc2	UTSW	10	41922602	missense	probably benign	0.25
R9746:Armc2	UTSW	10	41924461	missense	probably damaging	1.00
Z1176:Armc2	UTSW	10	41927044	missense	probably damaging	1.00
Z1176:Armc2	UTSW	10	41963656	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- GTCATTAGGTCCCACCACATC -3'
(R):5'- CCTGAGTGTGGAGGTCTTCAAG -3'

Sequencing Primer
(F):5'- ACTGAGCTGGTCACAGTAGACTC -3'
(R):5'- AAGGTGCCAGGCCTTTATTTC -3'

Posted On

2015-02-18