Incidental Mutation 'R3416:Rtl4'
ID 266823
Institutional Source Beutler Lab
Gene Symbol Rtl4
Ensembl Gene ENSMUSG00000071679
Gene Name retrotransposon Gag like 4
Synonyms C230031A03Rik, Zcchc16, Mar4
MMRRC Submission 040634-MU
Accession Numbers
Essential gene? Non essential (E-score: 0.000) question?
Stock # R3416 (G1)
Quality Score 222
Status Validated
Chromosome X
Chromosomal Location 143471903-143905407 bp(+) (GRCm39)
Type of Mutation nonsense
DNA Base Change (assembly) C to T at 143902901 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Glutamine to Stop codon at position 108 (Q108*)
Ref Sequence ENSEMBL: ENSMUSP00000108462 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000096301] [ENSMUST00000112843]
AlphaFold Q3URY0
Predicted Effect probably null
Transcript: ENSMUST00000096301
AA Change: Q108*
SMART Domains Protein: ENSMUSP00000108463
Gene: ENSMUSG00000071679
AA Change: Q108*

DomainStartEndE-ValueType
ZnF_C2HC 277 293 6.8e-2 SMART
Predicted Effect probably null
Transcript: ENSMUST00000112843
AA Change: Q108*
SMART Domains Protein: ENSMUSP00000108462
Gene: ENSMUSG00000071679
AA Change: Q108*

DomainStartEndE-ValueType
ZnF_C2HC 277 293 6.8e-2 SMART
Meta Mutation Damage Score 0.9755 question?
Coding Region Coverage
  • 1x: 99.1%
  • 3x: 98.5%
  • 10x: 97.2%
  • 20x: 94.7%
Validation Efficiency 100% (33/33)
Allele List at MGI
Other mutations in this stock
Total: 33 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
1500009L16Rik T C 10: 83,595,496 (GRCm39) probably null Het
Abi1 T C 2: 22,930,014 (GRCm39) S22G probably damaging Het
Adgrl2 T C 3: 148,564,965 (GRCm39) Y201C probably damaging Het
Adnp2 T C 18: 80,171,373 (GRCm39) E1012G possibly damaging Het
Azin1 A T 15: 38,493,790 (GRCm39) S278T possibly damaging Het
Crocc G A 4: 140,773,758 (GRCm39) T103I possibly damaging Het
Cyb561d2 A G 9: 107,417,325 (GRCm39) L142P probably damaging Het
Cyp4f39 T C 17: 32,708,716 (GRCm39) V421A possibly damaging Het
Fryl T C 5: 73,265,417 (GRCm39) Q510R possibly damaging Het
Gfra1 T C 19: 58,255,544 (GRCm39) Y301C probably damaging Het
Igsf9b G A 9: 27,220,774 (GRCm39) V47I possibly damaging Het
Klhl42 G A 6: 147,009,378 (GRCm39) V406M probably damaging Het
Mfsd13a C T 19: 46,360,431 (GRCm39) R328C probably damaging Het
Mycs C T X: 5,380,810 (GRCm39) S90N possibly damaging Het
Or5p80 G A 7: 108,229,225 (GRCm39) V9I possibly damaging Het
Pcdha8 A T 18: 37,125,683 (GRCm39) Q55L probably benign Het
Pkhd1l1 A G 15: 44,410,760 (GRCm39) T2756A probably damaging Het
Prl8a8 A T 13: 27,695,532 (GRCm39) C71S probably damaging Het
Ralgapa1 T A 12: 55,817,398 (GRCm39) probably benign Het
Scn4a A T 11: 106,221,239 (GRCm39) S807T probably benign Het
Sla2 G A 2: 156,717,862 (GRCm39) R137C probably damaging Het
Smg1 G C 7: 117,748,076 (GRCm39) probably benign Het
Spata1 A T 3: 146,193,263 (GRCm39) probably benign Het
Strbp C G 2: 37,480,737 (GRCm39) R610T possibly damaging Het
Susd5 A G 9: 113,924,726 (GRCm39) D203G possibly damaging Het
Tas2r124 A T 6: 132,732,601 (GRCm39) R303S probably benign Het
Tgm3 G A 2: 129,889,692 (GRCm39) V629M possibly damaging Het
Tha1 T C 11: 117,764,026 (GRCm39) D67G possibly damaging Het
Vmn2r120 T A 17: 57,816,241 (GRCm39) I705F possibly damaging Het
Vrk3 C T 7: 44,424,866 (GRCm39) T427M probably benign Het
Zan T A 5: 137,433,982 (GRCm39) E2250D unknown Het
Zfp560 A T 9: 20,258,974 (GRCm39) Y629* probably null Het
Zftraf1 A T 15: 76,542,915 (GRCm39) probably null Het
Other mutations in Rtl4
AlleleSourceChrCoordTypePredicted EffectPPH Score
R3417:Rtl4 UTSW X 143,902,901 (GRCm39) nonsense probably null
Predicted Primers PCR Primer
(F):5'- TGTACCTGCCCTGAATACCC -3'
(R):5'- TCTCACGATAACTCAAATTTGGAGC -3'

Sequencing Primer
(F):5'- TGAATACCCCAGTGATGTCTG -3'
(R):5'- CTCAAATTTGGAGCATGAAGTTGG -3'
Posted On 2015-02-18