Incidental Mutation 'R3437:Gmnc'
ID 267256
Institutional Source Beutler Lab
Gene Symbol Gmnc
Ensembl Gene ENSMUSG00000068428
Gene Name geminin coiled-coil domain containing
Synonyms Gm606, LOC239789, LOC385639
MMRRC Submission 040655-MU
Accession Numbers
Essential gene? Non essential (E-score: 0.000) question?
Stock # R3437 (G1)
Quality Score 225
Status Validated
Chromosome 16
Chromosomal Location 26775985-26810424 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) G to T at 26779217 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Histidine to Glutamine at position 221 (H221Q)
Ref Sequence ENSEMBL: ENSMUSP00000156264 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000089832] [ENSMUST00000231299] [ENSMUST00000231417] [ENSMUST00000231969]
AlphaFold Q3URY2
Predicted Effect probably benign
Transcript: ENSMUST00000089832
AA Change: H269Q

PolyPhen 2 Score 0.008 (Sensitivity: 0.96; Specificity: 0.76)
SMART Domains Protein: ENSMUSP00000087269
Gene: ENSMUSG00000068428
AA Change: H269Q

DomainStartEndE-ValueType
coiled coil region 89 124 N/A INTRINSIC
low complexity region 148 161 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000231299
AA Change: H221Q

PolyPhen 2 Score 0.021 (Sensitivity: 0.95; Specificity: 0.80)
Predicted Effect probably benign
Transcript: ENSMUST00000231417
Predicted Effect probably benign
Transcript: ENSMUST00000231969
AA Change: H263Q

PolyPhen 2 Score 0.008 (Sensitivity: 0.96; Specificity: 0.76)
Meta Mutation Damage Score 0.0877 question?
Coding Region Coverage
  • 1x: 99.2%
  • 3x: 98.6%
  • 10x: 97.2%
  • 20x: 94.6%
Validation Efficiency 100% (42/42)
MGI Phenotype PHENOTYPE: Mice homozygous for a knock-out allele die within the first postnatal week exhibiting severe postnatal growth retardation and absence of respiratory motile cilia in tracheal epithelial cells. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 43 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
A2m T G 6: 121,616,253 (GRCm39) L127R probably null Het
Ambp T C 4: 63,067,721 (GRCm39) E163G probably benign Het
Amy1 G A 3: 113,349,658 (GRCm39) A504V probably damaging Het
Angptl3 A T 4: 98,921,540 (GRCm39) K219N probably benign Het
Atp6v1g1 A G 4: 63,468,255 (GRCm39) N86S probably benign Het
Avl9 T C 6: 56,713,612 (GRCm39) V290A probably benign Het
Bad A G 19: 6,919,799 (GRCm39) R37G probably benign Het
Bicra T C 7: 15,723,223 (GRCm39) D98G possibly damaging Het
Cfap251 A G 5: 123,392,435 (GRCm39) probably benign Het
Col4a4 G A 1: 82,474,889 (GRCm39) T650M unknown Het
Cyp11b2 T C 15: 74,727,298 (GRCm39) R128G probably benign Het
Dst T C 1: 34,229,303 (GRCm39) S1974P probably damaging Het
Fabp1 T C 6: 71,178,595 (GRCm39) L24P probably benign Het
Flnb T C 14: 7,942,057 (GRCm38) V2345A probably damaging Het
Homer1 T C 13: 93,502,929 (GRCm39) probably benign Het
Kit A G 5: 75,806,565 (GRCm39) D690G probably damaging Het
Lama2 C T 10: 26,877,231 (GRCm39) E2652K probably benign Het
Mc3r C T 2: 172,091,588 (GRCm39) T270I probably benign Het
Mrgpra3 A C 7: 47,239,314 (GRCm39) L204W probably damaging Het
Mroh1 C T 15: 76,317,808 (GRCm39) T839I possibly damaging Het
Naip2 T A 13: 100,291,419 (GRCm39) H1173L probably benign Het
Optc T C 1: 133,825,617 (GRCm39) D303G probably damaging Het
Or2n1d A G 17: 38,646,323 (GRCm39) I92V probably damaging Het
Or5af1 A T 11: 58,722,150 (GRCm39) M57L probably damaging Het
P4ha3 C T 7: 99,934,831 (GRCm39) A31V possibly damaging Het
Plch2 A G 4: 155,075,470 (GRCm39) probably null Het
Plpp2 A T 10: 79,363,647 (GRCm39) probably null Het
Polq A T 16: 36,882,699 (GRCm39) N1342I probably damaging Het
Pter T A 2: 13,005,805 (GRCm39) L326H probably benign Het
Pwwp2a C T 11: 43,597,015 (GRCm39) Q452* probably null Het
Slc8a2 T G 7: 15,892,810 (GRCm39) V824G probably damaging Het
Slfn2 A T 11: 82,960,390 (GRCm39) H123L probably benign Het
Tmem132e A G 11: 82,335,156 (GRCm39) Y654C probably damaging Het
Trim14 C T 4: 46,523,739 (GRCm39) V100I possibly damaging Het
Tro G A X: 149,429,252 (GRCm39) probably benign Het
Uspl1 T A 5: 149,151,507 (GRCm39) probably benign Het
Uty A G Y: 1,158,336 (GRCm39) I522T probably benign Het
Vmn1r120 A C 7: 20,787,582 (GRCm39) L43W probably damaging Het
Vmn2r16 A T 5: 109,478,362 (GRCm39) D39V probably damaging Het
Washc4 T A 10: 83,405,866 (GRCm39) I454N probably benign Het
Wnt16 T C 6: 22,298,133 (GRCm39) V333A probably damaging Het
Ylpm1 T C 12: 85,096,644 (GRCm39) probably null Het
Zfy1 A T Y: 726,357 (GRCm39) D469E possibly damaging Het
Other mutations in Gmnc
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00757:Gmnc APN 16 26,782,689 (GRCm39) missense probably damaging 0.99
IGL01612:Gmnc APN 16 26,779,069 (GRCm39) nonsense probably null
IGL02600:Gmnc APN 16 26,781,641 (GRCm39) splice site probably benign
R0465:Gmnc UTSW 16 26,781,702 (GRCm39) missense probably damaging 0.98
R0925:Gmnc UTSW 16 26,779,173 (GRCm39) missense probably benign 0.08
R1388:Gmnc UTSW 16 26,782,662 (GRCm39) missense probably damaging 1.00
R1405:Gmnc UTSW 16 26,779,196 (GRCm39) missense possibly damaging 0.86
R1405:Gmnc UTSW 16 26,779,196 (GRCm39) missense possibly damaging 0.86
R1566:Gmnc UTSW 16 26,782,689 (GRCm39) missense probably damaging 0.99
R1574:Gmnc UTSW 16 26,782,729 (GRCm39) splice site probably benign
R1759:Gmnc UTSW 16 26,784,497 (GRCm39) missense possibly damaging 0.82
R1880:Gmnc UTSW 16 26,784,361 (GRCm39) missense probably damaging 1.00
R2151:Gmnc UTSW 16 26,779,456 (GRCm39) missense possibly damaging 0.91
R3017:Gmnc UTSW 16 26,779,165 (GRCm39) missense probably benign 0.00
R5078:Gmnc UTSW 16 26,784,332 (GRCm39) missense probably benign 0.13
R5225:Gmnc UTSW 16 26,782,695 (GRCm39) missense probably benign 0.04
R5589:Gmnc UTSW 16 26,781,714 (GRCm39) missense probably damaging 1.00
R6615:Gmnc UTSW 16 26,779,278 (GRCm39) missense probably benign 0.14
R7078:Gmnc UTSW 16 26,779,272 (GRCm39) missense probably benign
R7183:Gmnc UTSW 16 26,779,279 (GRCm39) missense probably benign 0.08
R7284:Gmnc UTSW 16 26,779,542 (GRCm39) missense probably benign 0.37
R8460:Gmnc UTSW 16 26,779,204 (GRCm39) missense probably benign 0.08
R9149:Gmnc UTSW 16 26,781,642 (GRCm39) critical splice donor site probably null
Predicted Primers PCR Primer
(F):5'- GAAAGGAGTCACTAGGTCTGC -3'
(R):5'- TCTACCAGCTAACTACAGTGCC -3'

Sequencing Primer
(F):5'- TGCTTAGGGACCCAGGTAAACTTC -3'
(R):5'- TACAGTGCCACCACCTCTCATC -3'
Posted On 2015-02-18